Ss1.1-Utr1-UTR010022H07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGCGCCTCAGGAGTAGAGTGTTCCTGGCAACATGGCGGTTGCTCTGAACCTGTGGCTG GGCAGGCGTGTCTGTGCAGTGGTCGCTCGCTGTGGGTTTGCTTCCCGGGGGGTGACGACC CCGGGCTGTACCAGTCGCGAGCCAGACCCTGATTCCGATTGGGAGCCGGAGGAGCGGGAG CTGCAGGAGGTGGAGAGCGCCCTGAAGCGACAGAAAAAAGCCATCAGGTTCCAGAAAATT CGGAGGCAAATGGAGGCGCCAGGTGCCCCGCCCAGGACCCTGACGAGGGAAGCCATGGAG CAGATTCGGTATTTACATAAGGAATTTGCAGCATCTTGGTCAGTTCCCAGATTGGCTGAA GGCTTTGATGTCAGCACTGATGTGATCCGAAGGGTTTTAAAAAGCAAGTTTGTGCCCACG TTGAAGCAGAAACTGAAGCAGGATCAAAAAGTTCTTAAGAATGTTGGGCTGTCCCGCTCA TTCCAGCAGCTCCCAGACTCTGGGGATGCCTGGAAACCACTCTCTGCAGGCCCTTCCATG TCAGGTTCTTCACTGATGCCAGGGGAAGAAACATCATCCAAAGGCCACAGTCAGACCACA GCTCTGAAAGTGATAGAACTGAATACTTACAGTACAGATACACCAAGGAGACAGAAGGGA AGGAATAAAGGAATCCAGGGCCTCAAGGAGGAAAAGAACTTTGTACCCATTGCCACAGAC CTGGGTCATCCAAGAGAGCTGCAGAAGTCCTCCACCAGCGATGGTGAGGGCACCAGAGGG ACCCACAGAGATGGATTGCCGAATGGCAAGGAACTGAAAGAGTGGGAGGCGGAGGAGTCA GGTGACCAGAACTTCAGCAACAAAGTTGTGCAGAGGGGCCGAGAGTTCTTTGACAGCAAT GGGAACTTCCTATACAGAATCTGAGCTGGGGCTTGGCCACATGAAACACAGCCGGGCGAG TGTATTCGGGGCTGCCTGGTTTTCTCTGTGTGGATTATTCACCTTGGAAGGAGGGCAAAT GATGAGCCTGGAATGTGGGATGAAAGAGTTGCGTGGACTTGAATCTGACAGGACAGAGTA CTTCATGGGGCAGATATGTATGGGAGCAGGGTGTGTGCCTGGCTGAGGGGGGATTCACGC CTTCGGGAGCACTTCAGGACTCACCCTTCTTTCTTGGGCTCTCTAAACCAGCCTGTGTTG CTTGTGTTGTTACAAGTTCCCGTGTTACTTGCAATATACGTTCAGGAGGAAATGAAAGAT TTGCTTTCTCATCTCATTTCCTTTTTTTTTTTGGCCGCACACATGGCATGTGGAAGTTCC CAGGCCAAAGAATGAACCCCTACCACAGCAGTGACCTGAGCCACTGCAGTGACAACGCCG GATCCTTACCCTCTGAGCCACACAGGAACTCCTCATTTACTTCTTGATTAATGAGCACTA ACAGTTCTGGAACTGCTTAGTCAGTTGACTGTCTTCATTATGTACAAAATAAAGTAAAAC TTAGCCGCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGCGCCTCAGGAGTAGAGTGTTCCTGGCAACATGGCGGTTGCTCTGAACCTGTGGCTG GGCAGGCGTGTCTGTGCAGTGGTCGCTCGCTGTGGGTTTGCTTCCCGGGGGGTGACGACC CCGGGCTGTACCAGTCGCGAGCCAGACCCTGATTCCGATTGGGAGCCGGAGGAGCGGGAG CTGCAGGAGGTGGAGAGCGCCCTGAAGCGACAGAAAAAAGCCATCAGGTTCCAGAAAATT CGGAGGCAAATGGAGGCGCCAGGTGCCCCGCCCAGGACCCTGACGAGGGAAGCCATGGAG CAGATTCGGTATTTACATAAGGAATTTGCAGCATCTTGGTCAGTTCCCAGATTGGCTGAA GGCTTTGATGTCAGCACTGATGTGATCCGAAGGGTTTTAAAAAGCAAGTTTGTGCCCACG TTGAAGCAGAAACTGAAGCAGGATCAAAAAGTTCTTAAGAATGTTGGGCTGTCCCGCTCA TTCCAGCAGCTCCCAGACTCTGGGGATGCCTGGAAACCACTCTCTGCAGGCCCTTCCATG TCAGGTTCTTCACTGATGCCAGGGGAAGAAACATCATCCAAAGGCCACAGTCAGACCACA GCTCTGAAAGTGATAGAACTGAATACTTACAGTACAGATACACCAAGGAGACAGAAGGGA AGGAATAAAGGAATCCAGGGCCTCAAGGAGGAAAAGAACTTTGTACCCATTGCCACAGAC CTGGGTCATCCAAGAGAGCTGCAGAAGTCCTCCACCAGCGATGGTGAGGGCACCAGAGGG ACCCACAGAGATGGATTGCCGAATGGCAAGGAACTGAAAGAGTGGGAGGCGGAGGAGTCA GGTGACCAGAACTTCAGCAACAAAGTTGTGCAGAGGGGCCGAGAGTTCTTTGACAGCAAT GGGAACTTCCTATACAGAATCTGAGCTGGGGCTTGGCCACATGAAACACAGCCGGGCGAG TGTATTCGGGGCTGCCTGGTTTTCTCTGTGTGGATTATTCACCTTGGAAGGAGGGCAAAT GATGAGCCTGGAATGTGGGATGAAAGAGTTGCGTGGACTTGAATCTGACAGGACAGAGTA CTTCATGGGGCAGATATGTATGGGAGCAGGGTGTGTGCCTGGCTGAGGGGGGATTCACGC CTTCGGGAGCACTTCAGGACTCACCCTTCTTTCTTGGGCTCTCTAAACCAGCCTGTGTTG CTTGTGTTGTTACAAGTTCCCGTGTTACTTGCAATATACGTTCAGGAGGAAATGAAAGAT TTGCTTTCTCATCTCATTTCCTTTTTTTTTTTGGCCGCACACATGGCATGTGGAAGTTCC CAGGCCAAAGAATGAACCCCTACCACAGCAGTGACCTGAGCCACTGCAGTGACAACGCCG GATCCTTACCCTCTGAGCCACACAGGAACTCCTCATTTACTTCTTGATTAATGAGCACTA ACAGTTCTGGAACTGCTTAGTCAGTTGACTGTCTTCATTATGTACAAAATAAAGTAAAAC TTAGCCGCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 421-539, - strand, RNAz p=0.70851 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 421-539, - strand, RNAz p=0.70851 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 195-363, gnl|bosTau2|chr10 (11048320-11048486) | |
| 195-363, gnl|canFam2|chr30 (39149368-39149771) | |
| 195-363, gnl|dasNov1|scaffold_10596 (1533-1161) | |
| 195-363, gnl|echTel1|scaffold_302702 (3018-2618) | |
| 195-363, gnl|hg17|chr15 (70865205-70865602) | |
| 195-363, gnl|Hg17|chr15 (70865487-70865654) | |
| 195-363, gnl|loxAfr1|scaffold_98951 (4215-4619) | |
| 195-363, gnl|mm7|chr9 (59316442-59316034) | |
| 195-363, gnl|Mm7|chr9 (59316150-59316006) | |
| 195-363, gnl|oryCun1|scaffold_199771 (17603-17249) | |
| 195-363, gnl|panTro1|chr16_random (19975067-19975464) | |
| 195-363, gnl|rheMac2|chr7 (51469009-51469405) | |
| 195-363, gnl|rn3|chr8 (63137996-63137577) | |
| 380-680, gnl|bosTau2|chr10 (11049001-11049290) | |
| 380-680, gnl|canFam2|chr30 (39149833-39150090) | |
| 380-680, gnl|dasNov1|scaffold_10596 (1107-848) | |
| 380-680, gnl|echTel1|scaffold_302702 (2382-2114) | |
| 380-680, gnl|hg17|chr15 (70865656-70865919) | |
| 380-680, gnl|Hg17|chr15 (70865691-70865978) | |
| 380-680, gnl|loxAfr1|scaffold_98951 (4673-4937) | |
| 380-680, gnl|mm7|chr9 (59315976-59315784) | |
| 380-680, gnl|Mm7|chr9 (59315969-59315674) | |
| 380-680, gnl|oryCun1|scaffold_199771 (13661-13455) | |
| 380-680, gnl|panTro1|chr16_random (19975518-19975781) | |
| 380-680, gnl|rheMac2|chr7 (51469459-51469713) | |
| 380-680, gnl|rn3|chr8 (63137552-63137370) | |
| 738-1152, gnl|bosTau2|chr21 (16217639-16217234) | |
| 738-1152, gnl|canFam2|chr3 (56075477-56074446) | |
| 738-1152, gnl|canFam2|chr3 (56075357-56074664) | |
| 738-1152, gnl|canFam2|chr3 (56075379-56074899) | |
| 738-1152, gnl|dasNov1|scaffold_54582 (1546-2571) | |
| 738-1152, gnl|dasNov1|scaffold_54582 (1692-2354) | |
| 738-1152, gnl|dasNov1|scaffold_54582 (1666-2116) | |
| 738-1152, gnl|echTel1|scaffold_310517 (121879-120869) | |
| 738-1152, gnl|echTel1|scaffold_310517 (121758-121082) | |
| 738-1152, gnl|echTel1|scaffold_310517 (121771-121331) | |
| 738-1152, gnl|Hg17|chr15 (88615821-88616198) | |
| 738-1152, gnl|hg17|chr3 (165201654-165202634) | |
| 738-1152, gnl|hg17|chr6 (22321222-22321588) | |
| 738-1152, gnl|hg17|chr7 (2206426-2207023) | |
| 738-1152, gnl|loxAfr1|scaffold_6146 (154542-153524) | |
| 738-1152, gnl|loxAfr1|scaffold_6146 (154415-153737) | |
| 738-1152, gnl|loxAfr1|scaffold_6146 (154428-153986) | |
| 738-1152, gnl|mm7|chr7 (76134183-76133270) | |
| 738-1152, gnl|mm7|chr7 (76134036-76133500) | |
| 738-1152, gnl|mm7|chr7 (76134084-76133720) | |
| 738-1152, gnl|Mm7|chr7 (76133579-76133950) | |
| 738-1152, gnl|monDom2|scaffold_45 (10138365-10139270) | |
| 738-1152, gnl|oryCun1|scaffold_199771 (12756-13631) | |
| 738-1152, gnl|oryCun1|scaffold_199771 (12936-13433) | |
| 738-1152, gnl|oryCun1|scaffold_199771 (12877-13211) | |
| 738-1152, gnl|panTro1|chr2 (168647504-168648482) | |
| 738-1152, gnl|panTro1|chr5 (22734499-22734865) | |
| 738-1152, gnl|panTro1|chr6 (2416727-2417311) | |
| 738-1152, gnl|rheMac2|chr15 (99692114-99691731) | |
| 738-1152, gnl|rheMac2|chr2 (123499449-123498454) | |
| 738-1152, gnl|rheMac2|chr3 (40390465-40391062) | |
| 738-1152, gnl|rn3|chr1 (136159702-136158799) | |
| 738-1152, gnl|rn3|chr1 (136159586-136159013) | |
| 738-1152, gnl|rn3|chr1 (136159607-136159249) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-363, gnl|bosTau2|chr10 (11048320-11048486) | |
| 195-363, gnl|canFam2|chr30 (39149368-39149771) | |
| 195-363, gnl|dasNov1|scaffold_10596 (1533-1161) | |
| 195-363, gnl|echTel1|scaffold_302702 (3018-2618) | |
| 195-363, gnl|hg17|chr15 (70865205-70865602) | |
| 195-363, gnl|Hg17|chr15 (70865487-70865654) | |
| 195-363, gnl|loxAfr1|scaffold_98951 (4215-4619) | |
| 195-363, gnl|mm7|chr9 (59316442-59316034) | |
| 195-363, gnl|Mm7|chr9 (59316150-59316006) | |
| 195-363, gnl|oryCun1|scaffold_199771 (17603-17249) | |
| 195-363, gnl|panTro1|chr16_random (19975067-19975464) | |
| 195-363, gnl|rheMac2|chr7 (51469009-51469405) | |
| 195-363, gnl|rn3|chr8 (63137996-63137577) | |
| 380-680, gnl|bosTau2|chr10 (11049001-11049290) | |
| 380-680, gnl|canFam2|chr30 (39149833-39150090) | |
| 380-680, gnl|dasNov1|scaffold_10596 (1107-848) | |
| 380-680, gnl|echTel1|scaffold_302702 (2382-2114) | |
| 380-680, gnl|hg17|chr15 (70865656-70865919) | |
| 380-680, gnl|Hg17|chr15 (70865691-70865978) | |
| 380-680, gnl|loxAfr1|scaffold_98951 (4673-4937) | |
| 380-680, gnl|mm7|chr9 (59315976-59315784) | |
| 380-680, gnl|Mm7|chr9 (59315969-59315674) | |
| 380-680, gnl|oryCun1|scaffold_199771 (13661-13455) | |
| 380-680, gnl|panTro1|chr16_random (19975518-19975781) | |
| 380-680, gnl|rheMac2|chr7 (51469459-51469713) | |
| 380-680, gnl|rn3|chr8 (63137552-63137370) | |
| 738-1152, gnl|bosTau2|chr21 (16217639-16217234) | |
| 738-1152, gnl|canFam2|chr3 (56075477-56074446) | |
| 738-1152, gnl|canFam2|chr3 (56075357-56074664) | |
| 738-1152, gnl|canFam2|chr3 (56075379-56074899) | |
| 738-1152, gnl|dasNov1|scaffold_54582 (1546-2571) | |
| 738-1152, gnl|dasNov1|scaffold_54582 (1692-2354) | |
| 738-1152, gnl|dasNov1|scaffold_54582 (1666-2116) | |
| 738-1152, gnl|echTel1|scaffold_310517 (121879-120869) | |
| 738-1152, gnl|echTel1|scaffold_310517 (121758-121082) | |
| 738-1152, gnl|echTel1|scaffold_310517 (121771-121331) | |
| 738-1152, gnl|Hg17|chr15 (88615821-88616198) | |
| 738-1152, gnl|hg17|chr3 (165201654-165202634) | |
| 738-1152, gnl|hg17|chr6 (22321222-22321588) | |
| 738-1152, gnl|hg17|chr7 (2206426-2207023) | |
| 738-1152, gnl|loxAfr1|scaffold_6146 (154542-153524) | |
| 738-1152, gnl|loxAfr1|scaffold_6146 (154415-153737) | |
| 738-1152, gnl|loxAfr1|scaffold_6146 (154428-153986) | |
| 738-1152, gnl|mm7|chr7 (76134183-76133270) | |
| 738-1152, gnl|mm7|chr7 (76134036-76133500) | |
| 738-1152, gnl|mm7|chr7 (76134084-76133720) | |
| 738-1152, gnl|Mm7|chr7 (76133579-76133950) | |
| 738-1152, gnl|monDom2|scaffold_45 (10138365-10139270) | |
| 738-1152, gnl|oryCun1|scaffold_199771 (12756-13631) | |
| 738-1152, gnl|oryCun1|scaffold_199771 (12936-13433) | |
| 738-1152, gnl|oryCun1|scaffold_199771 (12877-13211) | |
| 738-1152, gnl|panTro1|chr2 (168647504-168648482) | |
| 738-1152, gnl|panTro1|chr5 (22734499-22734865) | |
| 738-1152, gnl|panTro1|chr6 (2416727-2417311) | |
| 738-1152, gnl|rheMac2|chr15 (99692114-99691731) | |
| 738-1152, gnl|rheMac2|chr2 (123499449-123498454) | |
| 738-1152, gnl|rheMac2|chr3 (40390465-40391062) | |
| 738-1152, gnl|rn3|chr1 (136159702-136158799) | |
| 738-1152, gnl|rn3|chr1 (136159586-136159013) | |
| 738-1152, gnl|rn3|chr1 (136159607-136159249) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cty (0.31224) | |
| fcc (0.197785) | |
| nje (0.16592) | |
| cov (0.132153) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| fcc (0.197785) | |
| nje (0.16592) | |
| cov (0.132153) |