Ss1.1-Utr1-UTR010023C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGAGCTTCGCTGGGACCCTGCGGAGACTGCGGCGGCTGCGCGCAGCAGCGAGGTGCT TGCTGGGTCCGGGGTGCGCGACGGCGCCGGGGCTGCGGTGAACGTCTCGCAAGCCGTGCA GTTACTAGCCGGGAGGCGCCGTCGCCATTGCCGCCTCGCTCGGTGAGCGCATCCCGCTCG CCGAGCAGGGCCGCAGCCGACCGCCGGCGCCATGGGCCAGTGCGGCATCACCTCCTCCAA GACCGTACTGGTGTTTCTCAACCTCATCTTTTGGGGAGCAGCTGGCATTTTATGCTATGT GGGAGCCTATGTCTTTATCACTTACGATGACTATGACCACTTCTTTGAAGATGTGTACAC TCTCATCCCTGCCGTAGTGATCATAGCTGTAGGGGCCTTGCTCTTCGTTATTGGGCTGAT TGGCTGCTGTGCCACAATCCGGGAAAGCCGATGTGGACTTGCCACGTTTGTCATCATCCT ACTCTTGGTTTTTGTCACAGAAGTTGTTGTAGTGGTTTTGGGATATGTTTACAGAGCAAA GGTGGAAAATGAGGTTGATCGCAGCATTCAGAAAGTATATAAGACCTACAATGGAACCAA TCCGGATGCTGCTAGCCGGGCTATTGATTATGTACAGAGACAGCTGCACTGTTGTGGAAT TCACAATTATTCAGACTGGGAAAATACAGACTGGTTCAAAGAAACCAAAAACCAGAGTGT CCCTCTTAGCTGTTGCAGAGAGACCTCCAGCAACTGTAATGGCAGTCTGGCCTACCCCTC TGATCTCTATTCTGAGGGGTGTGAGGCTCTAGTTGTGAAGAAGCTACAAGAAATCATGAT GCATGTTATCTGGGCGGCCCTGGCATTTGCAGCTATTCAGCTGCTGGGCATGCTGTGTGC GTGCATCGTATTGTGCAGAAGGAGTAGAGATCCTGCTTATGAGCTCCTCATCACCGGTGG AACCTATGCATAGTTGAAAACTCAAGCCTGAGCTTTTGAGTCTTGTTCTGATTTGGAAGG TGAATTGAGCAGGTCCACTGCTATTGGCCTCCTGAGTTCACTTAGTTAAAGCACACGTAC ACAGGTGTTGGACAGAGCAGCTTGGCTCTTCATGTGTCCACCTTCTTACCTACCTACCTA TGACTTTCCTTTCCTCTGTTCTAGCTGACTCTCCATGTCTAAGTGTTTAAGTACGGCGGT AAATGTTCTAATCTCAGAACCATTTGCGAGTTGCGTAGCATGGTAGAATTAAAGGCGGAC GTGGGCCTGCTTCTGTTACCTCCAAGCAGTAACGGGACTGCTGCTGAAGTATCACCGGGT CCTTTCAGTCTTCACTATGGAGAACTCTTGGCCAAAGGTTTCTGGGGAAGAGGGAGGCAG TCAGCTGTCTGGTTAAAGTTAATACCAGATGGTGCCCCTCATCAGTGTCCTTTTAAAAAT ATATACTGTAGTCTGGTAAGATAGCAACTGTACAAAACGGCTAAAATAGATTTTAGAATC ATACAGTGTGTATCTTGGTTCATCTTCAAAATCAGACTGATCTTTGAAACTAGTGGTTTA TAATCAAAGCTGGCTTTATAGGAGGAGTATAATGTATACACTACTGTTTTAAAACAATTT GTGCGAGTGTGTGTGTGTGTTTTTGTATGATTGAGCCCATTCATTGTAAGTCTAAACTCG TTAGAAATAATGTACCCACGTAGACTAGCAAAATAGTATGTAGATGTGATCTCAGTTGTA AATAGAAAAATCTAATTCAATAAACTCTGTATCACCCCCTCAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGAGCTTCGCTGGGACCCTGCGGAGACTGCGGCGGCTGCGCGCAGCAGCGAGGTGCT TGCTGGGTCCGGGGTGCGCGACGGCGCCGGGGCTGCGGTGAACGTCTCGCAAGCCGTGCA GTTACTAGCCGGGAGGCGCCGTCGCCATTGCCGCCTCGCTCGGTGAGCGCATCCCGCTCG CCGAGCAGGGCCGCAGCCGACCGCCGGCGCCATGGGCCAGTGCGGCATCACCTCCTCCAA GACCGTACTGGTGTTTCTCAACCTCATCTTTTGGGGAGCAGCTGGCATTTTATGCTATGT GGGAGCCTATGTCTTTATCACTTACGATGACTATGACCACTTCTTTGAAGATGTGTACAC TCTCATCCCTGCCGTAGTGATCATAGCTGTAGGGGCCTTGCTCTTCGTTATTGGGCTGAT TGGCTGCTGTGCCACAATCCGGGAAAGCCGATGTGGACTTGCCACGTTTGTCATCATCCT ACTCTTGGTTTTTGTCACAGAAGTTGTTGTAGTGGTTTTGGGATATGTTTACAGAGCAAA GGTGGAAAATGAGGTTGATCGCAGCATTCAGAAAGTATATAAGACCTACAATGGAACCAA TCCGGATGCTGCTAGCCGGGCTATTGATTATGTACAGAGACAGCTGCACTGTTGTGGAAT TCACAATTATTCAGACTGGGAAAATACAGACTGGTTCAAAGAAACCAAAAACCAGAGTGT CCCTCTTAGCTGTTGCAGAGAGACCTCCAGCAACTGTAATGGCAGTCTGGCCTACCCCTC TGATCTCTATTCTGAGGGGTGTGAGGCTCTAGTTGTGAAGAAGCTACAAGAAATCATGAT GCATGTTATCTGGGCGGCCCTGGCATTTGCAGCTATTCAGCTGCTGGGCATGCTGTGTGC GTGCATCGTATTGTGCAGAAGGAGTAGAGATCCTGCTTATGAGCTCCTCATCACCGGTGG AACCTATGCATAGTTGAAAACTCAAGCCTGAGCTTTTGAGTCTTGTTCTGATTTGGAAGG TGAATTGAGCAGGTCCACTGCTATTGGCCTCCTGAGTTCACTTAGTTAAAGCACACGTAC ACAGGTGTTGGACAGAGCAGCTTGGCTCTTCATGTGTCCACCTTCTTACCTACCTACCTA TGACTTTCCTTTCCTCTGTTCTAGCTGACTCTCCATGTCTAAGTGTTTAAGTACGGCGGT AAATGTTCTAATCTCAGAACCATTTGCGAGTTGCGTAGCATGGTAGAATTAAAGGCGGAC GTGGGCCTGCTTCTGTTACCTCCAAGCAGTAACGGGACTGCTGCTGAAGTATCACCGGGT CCTTTCAGTCTTCACTATGGAGAACTCTTGGCCAAAGGTTTCTGGGGAAGAGGGAGGCAG TCAGCTGTCTGGTTAAAGTTAATACCAGATGGTGCCCCTCATCAGTGTCCTTTTAAAAAT ATATACTGTAGTCTGGTAAGATAGCAACTGTACAAAACGGCTAAAATAGATTTTAGAATC ATACAGTGTGTATCTTGGTTCATCTTCAAAATCAGACTGATCTTTGAAACTAGTGGTTTA TAATCAAAGCTGGCTTTATAGGAGGAGTATAATGTATACACTACTGTTTTAAAACAATTT GTGCGAGTGTGTGTGTGTGTTTTTGTATGATTGAGCCCATTCATTGTAAGTCTAAACTCG TTAGAAATAATGTACCCACGTAGACTAGCAAAATAGTATGTAGATGTGATCTCAGTTGTA AATAGAAAAATCTAATTCAATAAACTCTGTATCACCCCCTCAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 642-798, - strand, RNAz p=0.999825 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 642-798, - strand, RNAz p=0.999825 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 45-1815, gnl|bosTau2|chr25 (24791527-24789747) | |
| 45-1815, gnl|Hg17|chr15 (75135668-75125428) | |
| 45-1815, gnl|Mm7|chr9 (56175272-56163552) | |
| 72-1793, gnl|bosTau2|chr25 (24782494-24780768) | |
| 72-1793, gnl|Hg17|chr15 (75135668-75125428) | |
| 72-1793, gnl|Mm7|chr9 (56175268-56163552) | |
| 274-466, gnl|bosTau2|chr21 (21541787-21541595) | |
| 274-466, gnl|canFam2|chr30 (42246296-42246035) | |
| 274-466, gnl|danRer3|chr7 (21017891-21018112) | |
| 274-466, gnl|dasNov1|scaffold_5321 (1391-1651) | |
| 274-466, gnl|echTel1|scaffold_277583 (44874-45127) | |
| 274-466, gnl|fr1|chrUn (225460103-225460332) | |
| 274-466, gnl|galGal2|chr10 (3920718-3920509) | |
| 274-466, gnl|hg17|chr15 (75135457-75135710) | |
| 274-466, gnl|Hg17|chr15 (75135653-75135461) | |
| 274-466, gnl|mm7|chr9 (56175049-56175297) | |
| 274-466, gnl|Mm7|chr9 (56175245-56175053) | |
| 274-466, gnl|monDom2|scaffold_41 (18431487-18431746) | |
| 274-466, gnl|oryCun1|scaffold_196286 (2661-2473) | |
| 274-466, gnl|panTro1|chr16 (75777616-75777871) | |
| 274-466, gnl|rheMac2|chr7 (56067913-56068166) | |
| 274-466, gnl|rn3|chr8 (59769036-59769262) | |
| 274-466, gnl|tetNig1|chr13 (6763084-6762865) | |
| 274-466, gnl|xenTro1|scaffold_62 (2107709-2107498) | |
| 642-797, gnl|bosTau2|chr21 (21536509-21536354) | |
| 642-797, gnl|canFam2|chr30 (42252175-42251996) | |
| 642-797, gnl|danRer3|chr7 (21017299-21017472) | |
| 642-797, gnl|dasNov1|scaffold_13414 (41465-41282) | |
| 642-797, gnl|echTel1|scaffold_277583 (41514-41698) | |
| 642-797, gnl|fr1|chrUn (225459130-225459315) | |
| 642-797, gnl|galGal2|chr10 (3926203-3926022) | |
| 642-797, gnl|hg17|chr15 (75132170-75132347) | |
| 642-797, gnl|Hg17|chr15 (75132328-75132173) | |
| 642-797, gnl|loxAfr1|scaffold_3691 (42793-42977) | |
| 642-797, gnl|mm7|chr9 (56173437-56173609) | |
| 642-797, gnl|Mm7|chr9 (56173595-56173440) | |
| 642-797, gnl|monDom2|scaffold_41 (18424925-18425102) | |
| 642-797, gnl|oryCun1|scaffold_6934 (7282-7459) | |
| 642-797, gnl|panTro1|chr16_random (23705479-23705302) | |
| 642-797, gnl|rheMac2|chr7 (56064588-56064760) | |
| 642-797, gnl|rn3|chr8 (59767239-59767411) | |
| 642-797, gnl|tetNig1|chr13 (6763923-6763747) | |
| 642-797, gnl|xenTro1|scaffold_62 (2110023-2109846) | |
| 1296-1788, gnl|bosTau2|chr10 (34366245-34366739) | |
| 1296-1788, gnl|Hg17|chr15 (75125906-75125428) | |
| 1296-1788, gnl|Mm7|chr9 (56164015-56163547) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-1815, gnl|bosTau2|chr25 (24791527-24789747) | |
| 45-1815, gnl|Hg17|chr15 (75135668-75125428) | |
| 45-1815, gnl|Mm7|chr9 (56175272-56163552) | |
| 72-1793, gnl|bosTau2|chr25 (24782494-24780768) | |
| 72-1793, gnl|Hg17|chr15 (75135668-75125428) | |
| 72-1793, gnl|Mm7|chr9 (56175268-56163552) | |
| 274-466, gnl|bosTau2|chr21 (21541787-21541595) | |
| 274-466, gnl|canFam2|chr30 (42246296-42246035) | |
| 274-466, gnl|danRer3|chr7 (21017891-21018112) | |
| 274-466, gnl|dasNov1|scaffold_5321 (1391-1651) | |
| 274-466, gnl|echTel1|scaffold_277583 (44874-45127) | |
| 274-466, gnl|fr1|chrUn (225460103-225460332) | |
| 274-466, gnl|galGal2|chr10 (3920718-3920509) | |
| 274-466, gnl|hg17|chr15 (75135457-75135710) | |
| 274-466, gnl|Hg17|chr15 (75135653-75135461) | |
| 274-466, gnl|mm7|chr9 (56175049-56175297) | |
| 274-466, gnl|Mm7|chr9 (56175245-56175053) | |
| 274-466, gnl|monDom2|scaffold_41 (18431487-18431746) | |
| 274-466, gnl|oryCun1|scaffold_196286 (2661-2473) | |
| 274-466, gnl|panTro1|chr16 (75777616-75777871) | |
| 274-466, gnl|rheMac2|chr7 (56067913-56068166) | |
| 274-466, gnl|rn3|chr8 (59769036-59769262) | |
| 274-466, gnl|tetNig1|chr13 (6763084-6762865) | |
| 274-466, gnl|xenTro1|scaffold_62 (2107709-2107498) | |
| 642-797, gnl|bosTau2|chr21 (21536509-21536354) | |
| 642-797, gnl|canFam2|chr30 (42252175-42251996) | |
| 642-797, gnl|danRer3|chr7 (21017299-21017472) | |
| 642-797, gnl|dasNov1|scaffold_13414 (41465-41282) | |
| 642-797, gnl|echTel1|scaffold_277583 (41514-41698) | |
| 642-797, gnl|fr1|chrUn (225459130-225459315) | |
| 642-797, gnl|galGal2|chr10 (3926203-3926022) | |
| 642-797, gnl|hg17|chr15 (75132170-75132347) | |
| 642-797, gnl|Hg17|chr15 (75132328-75132173) | |
| 642-797, gnl|loxAfr1|scaffold_3691 (42793-42977) | |
| 642-797, gnl|mm7|chr9 (56173437-56173609) | |
| 642-797, gnl|Mm7|chr9 (56173595-56173440) | |
| 642-797, gnl|monDom2|scaffold_41 (18424925-18425102) | |
| 642-797, gnl|oryCun1|scaffold_6934 (7282-7459) | |
| 642-797, gnl|panTro1|chr16_random (23705479-23705302) | |
| 642-797, gnl|rheMac2|chr7 (56064588-56064760) | |
| 642-797, gnl|rn3|chr8 (59767239-59767411) | |
| 642-797, gnl|tetNig1|chr13 (6763923-6763747) | |
| 642-797, gnl|xenTro1|scaffold_62 (2110023-2109846) | |
| 1296-1788, gnl|bosTau2|chr10 (34366245-34366739) | |
| 1296-1788, gnl|Hg17|chr15 (75125906-75125428) | |
| 1296-1788, gnl|Mm7|chr9 (56164015-56163547) |
| Expressed library(ies): 67 entry(ies) | More info |
| Expressed library(ies): 67 entry(ies) | Help | Less info |
| rec (1.90377) | |
| pro (1.5361) | |
| mga (1.28164) | |
| tbr (1.07925) | |
| cty (1.0408) | |
| ste (0.946458) | |
| ret (0.901133) | |
| sin (0.874738) | |
| eru (0.840336) | |
| bla (0.746083) | |
| fbs (0.701385) | |
| duo (0.691204) | |
| fco (0.628832) | |
| lun (0.601956) | |
| aor (0.585823) | |
| pty (0.570858) | |
| ssp (0.542079) | |
| ton (0.526501) | |
| mcp (0.511945) | |
| nco (0.485201) | |
| pgl (0.473934) | |
| ebs (0.473205) | |
| isp (0.451128) | |
| fat (0.442282) | |
| hyp (0.42851) | |
| amn (0.417711) | |
| hea (0.408998) | |
| nmm (0.398406) | |
| jej (0.395687) | |
| ova (0.387397) | |
| sug (0.381874) | |
| ese (0.379507) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| eje (0.296501) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| fce (0.271592) | |
| cov (0.264306) | |
| kid (0.259471) | |
| tra (0.246184) | |
| jca (0.22792) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| thg (0.126791) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 67 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (1.90377) | |
| pro (1.5361) | |
| mga (1.28164) | |
| tbr (1.07925) | |
| cty (1.0408) | |
| ste (0.946458) | |
| ret (0.901133) | |
| sin (0.874738) | |
| eru (0.840336) | |
| bla (0.746083) | |
| fbs (0.701385) | |
| duo (0.691204) | |
| fco (0.628832) | |
| lun (0.601956) | |
| aor (0.585823) | |
| pty (0.570858) | |
| ssp (0.542079) | |
| ton (0.526501) | |
| mcp (0.511945) | |
| nco (0.485201) | |
| pgl (0.473934) | |
| ebs (0.473205) | |
| isp (0.451128) | |
| fat (0.442282) | |
| hyp (0.42851) | |
| amn (0.417711) | |
| hea (0.408998) | |
| nmm (0.398406) | |
| jej (0.395687) | |
| ova (0.387397) | |
| sug (0.381874) | |
| ese (0.379507) | |
| spc (0.340097) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| eje (0.296501) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| fce (0.271592) | |
| cov (0.264306) | |
| kid (0.259471) | |
| tra (0.246184) | |
| jca (0.22792) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| thg (0.126791) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| cbl (0.114797) |