Non-Coding RNA Search

Ss1.1-Utr1-UTR010023D03.5

Sequence:


               
               AGGAGGGGCCTCAGTGCTTCCACAGCTGCTCTCTGGCCCTTTAAATCCTAGAAGCAAACT
TTTGGGGGAAAAGGACGGCTGGGAGGGGCCTGCACCTTAACCCTCCCTGCCCAGGGCGGA
CGGAGCTGGACGGAGCGGTAACTCTGCTCCGGTTTGGGCTCCTACCATGGCCCCCGAGAG
GGGCTGACACTTCCGTTCCTGGTGCAGGTGAGATCCCCGCCCGGAGGAAGAAGGAAGGCG
CCGACCTGGGACCAGGAGGCGGAGGCAGGCTCCGAACCAAGGAGAGGTGGCCGGGGTTGG
GGGGTGGTCTCGGCTTGAGCCTGAGCCTGAGCGCACGCCTGCCCGCTTCAGCAAGGACTG
CGAGATGCCGGTGCTGAAGCAGCTGGGCCCCGCGCAGCCCAAGAAGCGGCCAGAGCGCGG
CGCCCTGTCCATCTCCGCGCCCCTCGGCGACTTCCGACACACTCTGCACGTGGGACGCGG
TGGCGACGCCTTCGGGGACACGTCGTTCCTGAGCCGCCACGGCGGCGGGCCGCCCCCTGA
GCCCCGGGCACCACCTGCGGGGGCCCCGCGCTCCGCTCCGCCGCCCTCCGTGCCGCAGCC
GCCGCCACCCGCCCTCCGCGCGCCTGCTCCTGCCGACCCGCTGCTGTCCTTCCACCTGGA
TTTGGGCCCTTCCATGCTGGACGCGGTGCTGGGCGTCATGGACGCAGAACGCCCGGGCGC
CGCTGCCGCCAAGCCCGACGTGGACCCCGGCTCAGGGGCGCAGCAACCCAGGGCCCGCTG
CCTCCCCAATGCGGACCTCGAGCTGGACGACGTCATCGGCCTGTAGGCTCCCCCATTCCC
TGCGCCTTTACTGTCCAGCGCCCCACGTCTTTATACATAAACCGACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGGGCCTCAGTGCTTCCACAGCTGCTCTCTGGCCCTTTAAATCCTAGAAGCAAACT
TTTGGGGGAAAAGGACGGCTGGGAGGGGCCTGCACCTTAACCCTCCCTGCCCAGGGCGGA
CGGAGCTGGACGGAGCGGTAACTCTGCTCCGGTTTGGGCTCCTACCATGGCCCCCGAGAG
GGGCTGACACTTCCGTTCCTGGTGCAGGTGAGATCCCCGCCCGGAGGAAGAAGGAAGGCG
CCGACCTGGGACCAGGAGGCGGAGGCAGGCTCCGAACCAAGGAGAGGTGGCCGGGGTTGG
GGGGTGGTCTCGGCTTGAGCCTGAGCCTGAGCGCACGCCTGCCCGCTTCAGCAAGGACTG
CGAGATGCCGGTGCTGAAGCAGCTGGGCCCCGCGCAGCCCAAGAAGCGGCCAGAGCGCGG
CGCCCTGTCCATCTCCGCGCCCCTCGGCGACTTCCGACACACTCTGCACGTGGGACGCGG
TGGCGACGCCTTCGGGGACACGTCGTTCCTGAGCCGCCACGGCGGCGGGCCGCCCCCTGA
GCCCCGGGCACCACCTGCGGGGGCCCCGCGCTCCGCTCCGCCGCCCTCCGTGCCGCAGCC
GCCGCCACCCGCCCTCCGCGCGCCTGCTCCTGCCGACCCGCTGCTGTCCTTCCACCTGGA
TTTGGGCCCTTCCATGCTGGACGCGGTGCTGGGCGTCATGGACGCAGAACGCCCGGGCGC
CGCTGCCGCCAAGCCCGACGTGGACCCCGGCTCAGGGGCGCAGCAACCCAGGGCCCGCTG
CCTCCCCAATGCGGACCTCGAGCTGGACGACGTCATCGGCCTGTAGGCTCCCCCATTCCC
TGCGCCTTTACTGTCCAGCGCCCCACGTCTTTATACATAAACCGACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6NZY7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6NZY7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               89-194, + strand, RNAz p=0.9799
               

               
               101-214, - strand, RNAz p=0.663826

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-194, + strand, RNAz p=0.9799
               

               
               101-214, - strand, RNAz p=0.663826

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               64-230, gnl|bosTau2|chr18 (55355809-55355968)
               

               
               64-230, gnl|canFam2|chr1 (105914141-105913892)
               

               
               64-230, gnl|hg17|chr19 (59675996-59676272)
               

               
               64-230, gnl|Hg17|chr19 (59676153-59676003)
               

               
               64-230, gnl|loxAfr1|scaffold_55426 (10109-10383)
               

               
               64-230, gnl|mm7|chr7 (3722460-3722754)
               

               
               64-230, gnl|Mm7|chr7 (3722632-3722457)
               

               
               64-230, gnl|panTro1|chr20 (57124023-57124299)
               

               
               64-230, gnl|rheMac2|chr19 (60621205-60621481)
               

               
               64-230, gnl|rn3|chr1 (69526193-69525899)
               


               
               363-799, gnl|bosTau2|chr18 (55360540-55360976)
               

               
               363-799, gnl|Hg17|chr19 (59668545-59668138)
               

               
               363-799, gnl|Mm7|chr7 (3709815-3709439)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-230, gnl|bosTau2|chr18 (55355809-55355968)
               

               
               64-230, gnl|canFam2|chr1 (105914141-105913892)
               

               
               64-230, gnl|hg17|chr19 (59675996-59676272)
               

               
               64-230, gnl|Hg17|chr19 (59676153-59676003)
               

               
               64-230, gnl|loxAfr1|scaffold_55426 (10109-10383)
               

               
               64-230, gnl|mm7|chr7 (3722460-3722754)
               

               
               64-230, gnl|Mm7|chr7 (3722632-3722457)
               

               
               64-230, gnl|panTro1|chr20 (57124023-57124299)
               

               
               64-230, gnl|rheMac2|chr19 (60621205-60621481)
               

               
               64-230, gnl|rn3|chr1 (69526193-69525899)
               


               
               363-799, gnl|bosTau2|chr18 (55360540-55360976)
               

               
               363-799, gnl|Hg17|chr19 (59668545-59668138)
               

               
               363-799, gnl|Mm7|chr7 (3709815-3709439)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               eep (0.245128)
               

               
               eru (0.240096)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	89-194, + strand, RNAz p=0.9799
	101-214, - strand, RNAz p=0.663826

	64-230, gnl\|bosTau2\|chr18 (55355809-55355968)
	64-230, gnl\|canFam2\|chr1 (105914141-105913892)
	64-230, gnl\|hg17\|chr19 (59675996-59676272)
	64-230, gnl\|Hg17\|chr19 (59676153-59676003)
	64-230, gnl\|loxAfr1\|scaffold_55426 (10109-10383)
	64-230, gnl\|mm7\|chr7 (3722460-3722754)
	64-230, gnl\|Mm7\|chr7 (3722632-3722457)
	64-230, gnl\|panTro1\|chr20 (57124023-57124299)
	64-230, gnl\|rheMac2\|chr19 (60621205-60621481)
	64-230, gnl\|rn3\|chr1 (69526193-69525899)

	363-799, gnl\|bosTau2\|chr18 (55360540-55360976)
	363-799, gnl\|Hg17\|chr19 (59668545-59668138)
	363-799, gnl\|Mm7\|chr7 (3709815-3709439)

	eep (0.245128)
	eru (0.240096)
	mcp (0.170648)
	nco (0.161734)
	pty (0.142714)
	nca (0.136874)
	pla (0.133672)
	nmm (0.132802)
	ese (0.126502)
	med (0.116252)
	jca (0.11396)