Non-Coding RNA Search

Ss1.1-Utr1-UTR010023E03.5

Sequence:


               
               CTGAAGTTAGAACTGCATGGGTAGCTGTGAGGAGCCCTGCCGGGGTTGGGGGCACTATGT
CCCCAGCCCCGTGCTCCTCCTGAGTCTACTTCTGACAGCAGCTCCTTTTGGCCTGCTGGG
GGAGGAAACCCGCCAGGTGTCTCTGGAGGTCATCTCTGACGGGCTGGACCCTCCCCAGAA
CCTGCTTCATATCCATGCAGTGGGTACCAACTCCACACTGCACTATGTGTGGAGCAGCCT
AGGGCCCCCAGCAGTGCTACTAGTGGCCACCAATACCCCCCACAGCACCCTGCGTGTGAA
CTGGAGCCTCCTGATCTCCTCTGACCCTGAAGGGAGCTTGATGGTGCTCCCCAAAGACAG
CATCCAATTTTCTTCTGCCGTTGTCTTTACCAGGCTGTTTGAATTTGACAGCACCAACAC
ATCCGATGCAGTGACAAAGCCTCCAAGAAAATCGTATCCTCCGTATTCCTTGGCTGAGTT
CTCTTGGAACAACATCACTGATTCATTGGATCCTGCCACCCTGAGTGCCACATTTCGAGG
CCACCCCATTCACGACCCTACCGGGGCTTTTGCCAATGGCAGCTTGGCCCTCAGGGTGCA
GGCATTCTCCAAATCTGGCCGACCAGCACAACCCCCTCGCCTCCTGCACACAGCGGACAC
CTGCCAGCTAGAGGTGGCTCTGGTTGGGGCCACTCCCCGGGGAAACCGCTCCCTGTTTGG
GCTGGAGGTAGCCACCTTGAGCCAGGGCCCTGACTGCCCCTCAGTGCAGGAGCAGCGCTC
CATCGATGATGAATATGCACCCGCTGTCTTCCAGTTGGACCAGCTGCTGTGGGGCTCCCT
CCCATCAGGCTTCGTGCAGTGGCGACCAGTGGCTTTCTCCCAGAAGCAGGGGAGCCGGGA
TTCAGCCATGCCCTGCCAAGCTTCCCCTCTTTACCCCACCTTGGCATACCTTCTCCCCCA
GTCACCTATTGTTCGAGCCTTCTTTGGGTCCCAGAACAACTTCTGTGCCTTCAATCTAAC
ATTTGGAGCTTCCACAGGCCCTGGCTACTGGGACCAACACTACCTCAGCTGGTCCATGCT
CCTGGGTGTGGGCTCCCCTCCGGTGGATGCCTTGTCCCCGCTAGTCCTGGGCATCATGGC
AGTGGCCCTGGGTGCACCAGGGCTCATGCTGCTGGCAGGAGGCCTGTTTGTAATGCTGGG
CCACAAGCGGCACTCAGAATACCAGTCCATAAATTGAGGCCTGCTCTCTAGAGGGAAGGA
CATTACTGGACCTGCCTTGTAGTCTGCAAGTTTGAGGTCTGTATTCCCAGCCAGCTGCTC
CCTTTTCAGCTGCTCTTGCTTTCCTGCAGAACCTCAGAGACCAGCCTCAACTTCCTATGG
ACCCAGGTGGGGCATCCTTCAAACTCTGAGGAGGGGCCAGGGACAGAGTGATTGCTAGAG
GGAGGGTCCCCTTGGTGTTGCCTCCCCACCCTGCCACCCCCCATTTCCCTGGAATGGGAC
TCACAGGCCTAGATGAGAGGCCTTCTGACTCTTTGCTGCCCTGGAGAGTATGAAATAGAT
GAATTTTTTCCACAGGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAGTTAGAACTGCATGGGTAGCTGTGAGGAGCCCTGCCGGGGTTGGGGGCACTATGT
CCCCAGCCCCGTGCTCCTCCTGAGTCTACTTCTGACAGCAGCTCCTTTTGGCCTGCTGGG
GGAGGAAACCCGCCAGGTGTCTCTGGAGGTCATCTCTGACGGGCTGGACCCTCCCCAGAA
CCTGCTTCATATCCATGCAGTGGGTACCAACTCCACACTGCACTATGTGTGGAGCAGCCT
AGGGCCCCCAGCAGTGCTACTAGTGGCCACCAATACCCCCCACAGCACCCTGCGTGTGAA
CTGGAGCCTCCTGATCTCCTCTGACCCTGAAGGGAGCTTGATGGTGCTCCCCAAAGACAG
CATCCAATTTTCTTCTGCCGTTGTCTTTACCAGGCTGTTTGAATTTGACAGCACCAACAC
ATCCGATGCAGTGACAAAGCCTCCAAGAAAATCGTATCCTCCGTATTCCTTGGCTGAGTT
CTCTTGGAACAACATCACTGATTCATTGGATCCTGCCACCCTGAGTGCCACATTTCGAGG
CCACCCCATTCACGACCCTACCGGGGCTTTTGCCAATGGCAGCTTGGCCCTCAGGGTGCA
GGCATTCTCCAAATCTGGCCGACCAGCACAACCCCCTCGCCTCCTGCACACAGCGGACAC
CTGCCAGCTAGAGGTGGCTCTGGTTGGGGCCACTCCCCGGGGAAACCGCTCCCTGTTTGG
GCTGGAGGTAGCCACCTTGAGCCAGGGCCCTGACTGCCCCTCAGTGCAGGAGCAGCGCTC
CATCGATGATGAATATGCACCCGCTGTCTTCCAGTTGGACCAGCTGCTGTGGGGCTCCCT
CCCATCAGGCTTCGTGCAGTGGCGACCAGTGGCTTTCTCCCAGAAGCAGGGGAGCCGGGA
TTCAGCCATGCCCTGCCAAGCTTCCCCTCTTTACCCCACCTTGGCATACCTTCTCCCCCA
GTCACCTATTGTTCGAGCCTTCTTTGGGTCCCAGAACAACTTCTGTGCCTTCAATCTAAC
ATTTGGAGCTTCCACAGGCCCTGGCTACTGGGACCAACACTACCTCAGCTGGTCCATGCT
CCTGGGTGTGGGCTCCCCTCCGGTGGATGCCTTGTCCCCGCTAGTCCTGGGCATCATGGC
AGTGGCCCTGGGTGCACCAGGGCTCATGCTGCTGGCAGGAGGCCTGTTTGTAATGCTGGG
CCACAAGCGGCACTCAGAATACCAGTCCATAAATTGAGGCCTGCTCTCTAGAGGGAAGGA
CATTACTGGACCTGCCTTGTAGTCTGCAAGTTTGAGGTCTGTATTCCCAGCCAGCTGCTC
CCTTTTCAGCTGCTCTTGCTTTCCTGCAGAACCTCAGAGACCAGCCTCAACTTCCTATGG
ACCCAGGTGGGGCATCCTTCAAACTCTGAGGAGGGGCCAGGGACAGAGTGATTGCTAGAG
GGAGGGTCCCCTTGGTGTTGCCTCCCCACCCTGCCACCCCCCATTTCCCTGGAATGGGAC
TCACAGGCCTAGATGAGAGGCCTTCTGACTCTTTGCTGCCCTGGAGAGTATGAAATAGAT
GAATTTTTTCCACAGGAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55960503|emb|CAI14164.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55960503|emb|CAI14164.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               133-1420, - strand, RNAz p=0.996545
               

               
               674-793, + strand, RNAz p=0.532933
               

               
               1071-1189, - strand, RNAz p=0.889575

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-1420, - strand, RNAz p=0.996545
               

               
               674-793, + strand, RNAz p=0.532933
               

               
               1071-1189, - strand, RNAz p=0.889575

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               133-397, gnl|bosTau2|chr3 (10368313-10368049)
               

               
               133-397, gnl|Hg17|chr1 (153077884-153077620)
               

               
               133-397, gnl|Mm7|chr3 (88439474-88439735)
               


               
               595-817, gnl|bosTau2|chr3 (10367522-10367300)
               

               
               595-817, gnl|Hg17|chr1 (153077101-153076879)
               

               
               595-817, gnl|Mm7|chr3 (88440211-88440433)
               


               
               1071-1576, gnl|bosTau2|chr3 (10366529-10366021)
               

               
               1071-1576, gnl|Hg17|chr1 (153076074-153075553)
               

               
               1071-1576, gnl|Mm7|chr3 (88442003-88442431)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-397, gnl|bosTau2|chr3 (10368313-10368049)
               

               
               133-397, gnl|Hg17|chr1 (153077884-153077620)
               

               
               133-397, gnl|Mm7|chr3 (88439474-88439735)
               


               
               595-817, gnl|bosTau2|chr3 (10367522-10367300)
               

               
               595-817, gnl|Hg17|chr1 (153077101-153076879)
               

               
               595-817, gnl|Mm7|chr3 (88440211-88440433)
               


               
               1071-1576, gnl|bosTau2|chr3 (10366529-10366021)
               

               
               1071-1576, gnl|Hg17|chr1 (153076074-153075553)
               

               
               1071-1576, gnl|Mm7|chr3 (88442003-88442431)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cov (1.18937)
               

               
               nje (0.49776)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               elu (0.385356)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (1.18937)
               

               
               nje (0.49776)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               elu (0.385356)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)

	133-1420, - strand, RNAz p=0.996545
	674-793, + strand, RNAz p=0.532933
	1071-1189, - strand, RNAz p=0.889575

	133-397, gnl\|bosTau2\|chr3 (10368313-10368049)
	133-397, gnl\|Hg17\|chr1 (153077884-153077620)
	133-397, gnl\|Mm7\|chr3 (88439474-88439735)

	595-817, gnl\|bosTau2\|chr3 (10367522-10367300)
	595-817, gnl\|Hg17\|chr1 (153077101-153076879)
	595-817, gnl\|Mm7\|chr3 (88440211-88440433)

	1071-1576, gnl\|bosTau2\|chr3 (10366529-10366021)
	1071-1576, gnl\|Hg17\|chr1 (153076074-153075553)
	1071-1576, gnl\|Mm7\|chr3 (88442003-88442431)

	cov (1.18937)
	nje (0.49776)
	amn (0.417711)
	cty (0.41632)
	elu (0.385356)
	jej (0.296765)
	cga (0.279096)
	ute (0.265569)
	cly (0.241284)
	ece (0.229305)
	col (0.195008)
	nco (0.161734)
	lnt (0.142308)
	eep (0.122564)