Non-Coding RNA Search

Ss1.1-Utr1-UTR010023E10.5

Sequence:


               
               TCTCATGCTGAACGCCGTGTCTCGAGCCGTGGCTCGTGCTGCCGTCCGCAGCTCGCGTCG
CCCCAGACAATCCGAGGCTCGCCCCGCCGCTAGCGCAGCCGTCATGTCCCGGCCCCTGCG
GGCCACCTCGGGCTCCCCAGCCCGACCCGCCACAGTTCTGGGCACCATGGAGATGGGGCG
CCGCATGGACGCGCCCGCCAGCGCCGCGGCCGTGCGTGCCTTCCTGCAGCGCGGCTACAC
TGAGCTGGACACTGCCTTCATGTACAGCGACGGCCAGTCCGAGAGCATCCTGGGCGGCCT
GGGGCTCGGGCTGGGCGGCGGCGACTGCAGAGTGAAAATCGCCACCAAAGCCAATCCCTG
GGAAGGAAGGTCTCTGAAGCCCGACAGCCTCCGGTCCCAGCTGGAGACGTCACTGCAGCG
GCTGCAGTGCCCCCGGGTCGACCTCTTCTATCTACACGCACCTGACCACGGCACCCCCGT
GGAAGAGACGCTGCGCGCCTGCCACCAGCTGCACCAGGAGGGCAAGTTTGTGGAGCTTGG
CCTCTCCAACTATGCTGCCTGGGAGGTGGCCGAGATCTGTACCCTGTGCAGGAGCAACGG
CTGGATCCTGCCTACCGTGTACCAGGGCATGTACAACGCCACCACCCGGCAGGTGGAAAC
AGAGCTCTTCCCCTGCCTCAAACACTTTGGACTGAGGTTCTACGCCTACAACCCTCTGGC
TGGGGGCCTGCTGACCGGCAAGTACAAGTATGAGGACAAGGATGAGAAACAACCCCTGGG
CCGCTTCTTTGGGAACAGCTGGGCTGAAATCTACAGGAATCGGTTTTGGAAGGAGCACCA
TTTCAAGGCTATTGCCCTGGTGGAGAAGGCCCTGCAGGCTGCCTATGGCACCAGTGCCCC
CAGCATGACCTCGGCTGCCCTGCGGTGGATGTACCACCACTCGCAGCTCCAGGGTGACCA
TGGGGACGCTGTCATCCTGGGCATGTCCAGCCTGGAGCAGCTGGAGCAGAACTTGGCGGC
CACAGAGGGTGGGCCCCTGGAGCCCACTGTGGTGCAGGCCTTTGACCAAGCCTGGCACAT
GGTTGCCCATGAATGTCCCAACTACTTCCGCTAGGCCCCAGCATGGCTCAGGCTGCCAGG
GTTTCTTCCTTTTTTGTCCCCTTGTCTACTCACACTGGCCGGGCTTTGCCTTAAGCTGAT
TTAGCACAGTCTTTCTGCCCGGTCTCTTCTCCCCGCTCTGGAGCCTGCATTATTTTTCTA
GTTTCCTGCCTCACTCTCAGTTACCTTCACAATGTGTGAAGGCTGGGGCTGAGCCATGCG
TGGGTATTTCTTGTCTGAATAAAGCGGGCACCTGACCTGGCTGTCGCCCAGGCCCAGAGT
GAACCCCACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCATGCTGAACGCCGTGTCTCGAGCCGTGGCTCGTGCTGCCGTCCGCAGCTCGCGTCG
CCCCAGACAATCCGAGGCTCGCCCCGCCGCTAGCGCAGCCGTCATGTCCCGGCCCCTGCG
GGCCACCTCGGGCTCCCCAGCCCGACCCGCCACAGTTCTGGGCACCATGGAGATGGGGCG
CCGCATGGACGCGCCCGCCAGCGCCGCGGCCGTGCGTGCCTTCCTGCAGCGCGGCTACAC
TGAGCTGGACACTGCCTTCATGTACAGCGACGGCCAGTCCGAGAGCATCCTGGGCGGCCT
GGGGCTCGGGCTGGGCGGCGGCGACTGCAGAGTGAAAATCGCCACCAAAGCCAATCCCTG
GGAAGGAAGGTCTCTGAAGCCCGACAGCCTCCGGTCCCAGCTGGAGACGTCACTGCAGCG
GCTGCAGTGCCCCCGGGTCGACCTCTTCTATCTACACGCACCTGACCACGGCACCCCCGT
GGAAGAGACGCTGCGCGCCTGCCACCAGCTGCACCAGGAGGGCAAGTTTGTGGAGCTTGG
CCTCTCCAACTATGCTGCCTGGGAGGTGGCCGAGATCTGTACCCTGTGCAGGAGCAACGG
CTGGATCCTGCCTACCGTGTACCAGGGCATGTACAACGCCACCACCCGGCAGGTGGAAAC
AGAGCTCTTCCCCTGCCTCAAACACTTTGGACTGAGGTTCTACGCCTACAACCCTCTGGC
TGGGGGCCTGCTGACCGGCAAGTACAAGTATGAGGACAAGGATGAGAAACAACCCCTGGG
CCGCTTCTTTGGGAACAGCTGGGCTGAAATCTACAGGAATCGGTTTTGGAAGGAGCACCA
TTTCAAGGCTATTGCCCTGGTGGAGAAGGCCCTGCAGGCTGCCTATGGCACCAGTGCCCC
CAGCATGACCTCGGCTGCCCTGCGGTGGATGTACCACCACTCGCAGCTCCAGGGTGACCA
TGGGGACGCTGTCATCCTGGGCATGTCCAGCCTGGAGCAGCTGGAGCAGAACTTGGCGGC
CACAGAGGGTGGGCCCCTGGAGCCCACTGTGGTGCAGGCCTTTGACCAAGCCTGGCACAT
GGTTGCCCATGAATGTCCCAACTACTTCCGCTAGGCCCCAGCATGGCTCAGGCTGCCAGG
GTTTCTTCCTTTTTTGTCCCCTTGTCTACTCACACTGGCCGGGCTTTGCCTTAAGCTGAT
TTAGCACAGTCTTTCTGCCCGGTCTCTTCTCCCCGCTCTGGAGCCTGCATTATTTTTCTA
GTTTCCTGCCTCACTCTCAGTTACCTTCACAATGTGTGAAGGCTGGGGCTGAGCCATGCG
TGGGTATTTCTTGTCTGAATAAAGCGGGCACCTGACCTGGCTGTCGCCCAGGCCCAGAGT
GAACCCCACAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|39645003|gb|AAH07352.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39645003|gb|AAH07352.2|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               990-1187, - strand, RNAz p=0.869405
               

               
               1270-1387, + strand, RNAz p=0.530736

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               990-1187, - strand, RNAz p=0.869405
               

               
               1270-1387, + strand, RNAz p=0.530736

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               325-521, gnl|bosTau2|chr2 (61228261-61228065)
               

               
               325-521, gnl|Hg17|chr1 (19380449-19380254)
               

               
               325-521, gnl|Mm7|chr4 (138692538-138692733)
               


               
               692-824, gnl|bosTau2|chr2 (61226657-61226527)
               

               
               692-824, gnl|Hg17|chr1 (19378945-19378800)
               

               
               692-824, gnl|Mm7|chr4 (138695342-138695476)
               


               
               950-1387, gnl|bosTau2|chr2 (61225050-61224628)
               

               
               950-1387, gnl|Hg17|chr1 (19376189-19375770)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               325-521, gnl|bosTau2|chr2 (61228261-61228065)
               

               
               325-521, gnl|Hg17|chr1 (19380449-19380254)
               

               
               325-521, gnl|Mm7|chr4 (138692538-138692733)
               


               
               692-824, gnl|bosTau2|chr2 (61226657-61226527)
               

               
               692-824, gnl|Hg17|chr1 (19378945-19378800)
               

               
               692-824, gnl|Mm7|chr4 (138695342-138695476)
               


               
               950-1387, gnl|bosTau2|chr2 (61225050-61224628)
               

               
               950-1387, gnl|Hg17|chr1 (19376189-19375770)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               jej (1.08814)
               

               
               cli (0.611247)
               

               
               duo (0.518403)
               

               
               nco (0.485201)
               

               
               clu (0.478583)
               

               
               cov (0.396458)
               

               
               fhi (0.339155)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (1.08814)
               

               
               cli (0.611247)
               

               
               duo (0.518403)
               

               
               nco (0.485201)
               

               
               clu (0.478583)
               

               
               cov (0.396458)
               

               
               fhi (0.339155)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	990-1187, - strand, RNAz p=0.869405
	1270-1387, + strand, RNAz p=0.530736

	325-521, gnl\|bosTau2\|chr2 (61228261-61228065)
	325-521, gnl\|Hg17\|chr1 (19380449-19380254)
	325-521, gnl\|Mm7\|chr4 (138692538-138692733)

	692-824, gnl\|bosTau2\|chr2 (61226657-61226527)
	692-824, gnl\|Hg17\|chr1 (19378945-19378800)
	692-824, gnl\|Mm7\|chr4 (138695342-138695476)

	950-1387, gnl\|bosTau2\|chr2 (61225050-61224628)
	950-1387, gnl\|Hg17\|chr1 (19376189-19375770)

	jej (1.08814)
	cli (0.611247)
	duo (0.518403)
	nco (0.485201)
	clu (0.478583)
	cov (0.396458)
	fhi (0.339155)
	fli (0.202881)
	eje (0.197668)
	ill (0.175593)
	fbs (0.175346)
	nje (0.16592)
	cki (0.165235)
	ute (0.132784)
	kid (0.129735)
	cly (0.120642)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)