Ss1.1-Utr1-UTR010023G06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGACGAGGACCAGGAGGACGGGGAGAGCGGCTGCACCTTCCTGGTGGGCCTCATCCAGA AGCACCGGCGGCGGCAGAGGAAGATGGGCGAGGACATGCACACCATCGGCTTTGGCATCT ACGAGGTTCCGGAGGAGTTGACCGGACAGACCAACATCCACCTCAGCAAGAACTTCTTCC TGACGCACAGAGCGAGGGAGCGGTCGGACACCTTCATCAACCTGCGGGAAGTGCTGAACC GCTTCAAGCTGCCGCCGGGCGAGTACATCCTGGTGCCCTCCACCTTCGAGCCCAACAAGG ACGGGGACTTCTGCATCCGCGTCTTTTCCGAAAAGAAGGCCGACTACCAAGTCGTGGACG ATGAAATCGAGGCCGACCTGGAAGAGAATGATGCCAGCGAGGACGACATCGATGACGGAT TCAGGAGGCTGTTTGCCCAGCTGGCAGGAGAGGATGCAGAGATTTCTGCCTTTGAGTTGC AGACGATCCTGAGAAGAGTTCTAGCAAAGCGCCAAGACATCAAGTCAGACGGCTTCAGCA TCGAAACCTGCAAGATCATGGTTGACATGCTGGATTCGGACGGGAGTGGCAAGCTGGGTC TGAAGGAGTTCTACATCCTTTGGACAAAGATTCAAAAATACCAGAAAATTTACCGGGAAA TTGATGTGGACAGGTCGGGCACCATGAACTCCTATGAGATGCGGAAAGCATTAGAGGAAG CAGGTTTCAAGCTGCCCTGTCAGCTCCACCAAGTCATCGTCGCTCGGTTTGCAGATGACC AGCTCATCATCGATTTTGACAATTTTGTTCGGTGTTTGGTTCGACTAGAAACACTATTCA GGATATTTAAGCAGCTGGATTCAGAGAATACTGGAACAATCGAGCTGGACCTTATCTCTT GGCTGTGTTTCTCGGTACTTTGAAGTTATGACTAACCTGCCTGAAGACGTCTCATGAAAG AAAACCCACCAAGGACTAAACCTCCACAGAGAAATTTTTTATCTGGATCATGAAATGATG GGAACATTCACTTAAACCGATTAGCGCTGAAAATGATACTGTCTATGTGAGAACGCAGAC CTCCTAGATATCAAAGTAAAAGATTTGCATATCACACTAAATGCAATGAGTTGATTAGTT AACCTCAATCAAATTAGGGAAAACCTTTGGTCTGGACATAGCACACACTTTGTACTTTGA GACACTTTCCTGTTCATCGCAATATCACATCAGGAAGAAAGGCAGCGAGATACTTAGCAG CCGAGCTTACTGTAACATGCAGTCGATCTCAAAGGATCCGGGGTCCCTGCTGGCAATATT TAAAGCTACTTCACGTTTAAAAATGCAGCTGTGGCGCCCACCCAACAGCGGTGCAGGGAT GACCATTTCCTTTGAGTAAGATGGAAAAATATTTTGCATCGCGAAGGCATCGGAAGACAC CAGGTAGGAAGCACAGCTCTGTCATTTGCGTTACATGAGAGACAGACTATAGAAAACGGC TTGGTGAACAGTGACGTGTTCATAAGCCCTTGAGCATATCCAGTCGTAGACATTGTCATG AAGACCGAAGGGATTCACTCTCGCTCAGCTGAAGCCGTGACCCAGCAAGCCCACTGCGAT GGAAGACAGCACAGCTGCCTCCAAACTTCCTGAATGTCACCGCAAGCATCAAGCATCGCG CGTGGATGGGGTGGGGGGACGCCCTGCGGAAGCACCGCACCCTGCAGAAGGGACGCGGGC TTGACTCCTTCCTGGCTGCACCTTGGGGAAATGCTAGCAACATTAAAAAGATACTGCCTT GTTGCCTTATTTTCTTCCACATGTACTGTTCAATAAAGAGTCGCCCAGGCAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGACGAGGACCAGGAGGACGGGGAGAGCGGCTGCACCTTCCTGGTGGGCCTCATCCAGA AGCACCGGCGGCGGCAGAGGAAGATGGGCGAGGACATGCACACCATCGGCTTTGGCATCT ACGAGGTTCCGGAGGAGTTGACCGGACAGACCAACATCCACCTCAGCAAGAACTTCTTCC TGACGCACAGAGCGAGGGAGCGGTCGGACACCTTCATCAACCTGCGGGAAGTGCTGAACC GCTTCAAGCTGCCGCCGGGCGAGTACATCCTGGTGCCCTCCACCTTCGAGCCCAACAAGG ACGGGGACTTCTGCATCCGCGTCTTTTCCGAAAAGAAGGCCGACTACCAAGTCGTGGACG ATGAAATCGAGGCCGACCTGGAAGAGAATGATGCCAGCGAGGACGACATCGATGACGGAT TCAGGAGGCTGTTTGCCCAGCTGGCAGGAGAGGATGCAGAGATTTCTGCCTTTGAGTTGC AGACGATCCTGAGAAGAGTTCTAGCAAAGCGCCAAGACATCAAGTCAGACGGCTTCAGCA TCGAAACCTGCAAGATCATGGTTGACATGCTGGATTCGGACGGGAGTGGCAAGCTGGGTC TGAAGGAGTTCTACATCCTTTGGACAAAGATTCAAAAATACCAGAAAATTTACCGGGAAA TTGATGTGGACAGGTCGGGCACCATGAACTCCTATGAGATGCGGAAAGCATTAGAGGAAG CAGGTTTCAAGCTGCCCTGTCAGCTCCACCAAGTCATCGTCGCTCGGTTTGCAGATGACC AGCTCATCATCGATTTTGACAATTTTGTTCGGTGTTTGGTTCGACTAGAAACACTATTCA GGATATTTAAGCAGCTGGATTCAGAGAATACTGGAACAATCGAGCTGGACCTTATCTCTT GGCTGTGTTTCTCGGTACTTTGAAGTTATGACTAACCTGCCTGAAGACGTCTCATGAAAG AAAACCCACCAAGGACTAAACCTCCACAGAGAAATTTTTTATCTGGATCATGAAATGATG GGAACATTCACTTAAACCGATTAGCGCTGAAAATGATACTGTCTATGTGAGAACGCAGAC CTCCTAGATATCAAAGTAAAAGATTTGCATATCACACTAAATGCAATGAGTTGATTAGTT AACCTCAATCAAATTAGGGAAAACCTTTGGTCTGGACATAGCACACACTTTGTACTTTGA GACACTTTCCTGTTCATCGCAATATCACATCAGGAAGAAAGGCAGCGAGATACTTAGCAG CCGAGCTTACTGTAACATGCAGTCGATCTCAAAGGATCCGGGGTCCCTGCTGGCAATATT TAAAGCTACTTCACGTTTAAAAATGCAGCTGTGGCGCCCACCCAACAGCGGTGCAGGGAT GACCATTTCCTTTGAGTAAGATGGAAAAATATTTTGCATCGCGAAGGCATCGGAAGACAC CAGGTAGGAAGCACAGCTCTGTCATTTGCGTTACATGAGAGACAGACTATAGAAAACGGC TTGGTGAACAGTGACGTGTTCATAAGCCCTTGAGCATATCCAGTCGTAGACATTGTCATG AAGACCGAAGGGATTCACTCTCGCTCAGCTGAAGCCGTGACCCAGCAAGCCCACTGCGAT GGAAGACAGCACAGCTGCCTCCAAACTTCCTGAATGTCACCGCAAGCATCAAGCATCGCG CGTGGATGGGGTGGGGGGACGCCCTGCGGAAGCACCGCACCCTGCAGAAGGGACGCGGGC TTGACTCCTTCCTGGCTGCACCTTGGGGAAATGCTAGCAACATTAAAAAGATACTGCCTT GTTGCCTTATTTTCTTCCACATGTACTGTTCAATAAAGAGTCGCCCAGGCAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 1-127, gnl|bosTau2|chr16 (13940562-13940688) | |
| 1-127, gnl|Hg17|chr1 (220249962-220250088) | |
| 1-127, gnl|Mm7|chr1 (182469122-182468996) | |
| 136-349, gnl|bosTau2|chr16 (13943624-13943837) | |
| 136-349, gnl|canFam2|chr7 (43312651-43312515) | |
| 136-349, gnl|danRer3|chr13 (43131584-43131466) | |
| 136-349, gnl|dasNov1|scaffold_214027 (3989-3853) | |
| 136-349, gnl|echTel1|scaffold_222925 (71-191) | |
| 136-349, gnl|fr1|chrUn (270387784-270387648) | |
| 136-349, gnl|galGal2|chr3 (14028910-14028774) | |
| 136-349, gnl|hg17|chr1 (220253705-220253841) | |
| 136-349, gnl|Hg17|chr1 (220253705-220253918) | |
| 136-349, gnl|loxAfr1|scaffold_14483 (4399-4533) | |
| 136-349, gnl|mm7|chr1 (182466457-182466321) | |
| 136-349, gnl|Mm7|chr1 (182466455-182466242) | |
| 136-349, gnl|monDom2|scaffold_13 (31021318-31021454) | |
| 136-349, gnl|oryCun1|scaffold_32449 (154-15) | |
| 136-349, gnl|panTro1|chr1 (204212914-204213050) | |
| 136-349, gnl|rheMac2|chr1 (146572611-146572475) | |
| 136-349, gnl|rn3|chr13 (98677294-98677158) | |
| 136-349, gnl|tetNig1|chrUn_random (47703019-47702883) | |
| 136-349, gnl|xenTro1|scaffold_550 (554586-554450) | |
| 159-336, gnl|bosTau2|chr10 (17226392-17226569) | |
| 159-336, gnl|canFam2|chr30 (12365999-12366137) | |
| 159-336, gnl|danRer3|chr20 (26664132-26664270) | |
| 159-336, gnl|dasNov1|scaffold_214027 (3994-3853) | |
| 159-336, gnl|echTel1|scaffold_232875 (15573-15688) | |
| 159-336, gnl|fr1|chrUn (181869097-181868959) | |
| 159-336, gnl|galGal2|chr5 (22918011-22918149) | |
| 159-336, gnl|hg17|chr15 (40482277-40482415) | |
| 159-336, gnl|Hg17|chr15 (40482302-40482479) | |
| 159-336, gnl|loxAfr1|scaffold_4375 (18822-18687) | |
| 159-336, gnl|mm7|chr2 (120236707-120236845) | |
| 159-336, gnl|Mm7|chr2 (120236732-120236909) | |
| 159-336, gnl|monDom2|scaffold_53 (12146867-12146727) | |
| 159-336, gnl|oryCun1|scaffold_148722 (8096-8233) | |
| 159-336, gnl|panTro1|chr16 (40462816-40462954) | |
| 159-336, gnl|rheMac2|chr7 (20832754-20832892) | |
| 159-336, gnl|rn3|chr3 (106884779-106884917) | |
| 159-336, gnl|tetNig1|chr10 (11780281-11780419) | |
| 159-336, gnl|xenTro1|scaffold_117 (962967-962829) | |
| 721-841, gnl|bosTau2|chr16 (13954909-13955029) | |
| 721-841, gnl|canFam2|chr7 (43305458-43305325) | |
| 721-841, gnl|danRer3|chr13 (43124094-43123968) | |
| 721-841, gnl|dasNov1|scaffold_266949 (1445-1312) | |
| 721-841, gnl|echTel1|scaffold_276825 (46629-46503) | |
| 721-841, gnl|fr1|chrUn (270385320-270385186) | |
| 721-841, gnl|galGal2|chr3 (14024024-14023850) | |
| 721-841, gnl|hg17|chr1 (220266241-220266374) | |
| 721-841, gnl|Hg17|chr1 (220266243-220266363) | |
| 721-841, gnl|loxAfr1|scaffold_14483 (16288-16421) | |
| 721-841, gnl|mm7|chr1 (182455597-182455464) | |
| 721-841, gnl|Mm7|chr1 (182455593-182455473) | |
| 721-841, gnl|monDom2|scaffold_13 (31040171-31040304) | |
| 721-841, gnl|panTro1|chr1 (204225482-204225615) | |
| 721-841, gnl|rheMac2|chr1 (146561817-146561684) | |
| 721-841, gnl|rn3|chr13 (98665911-98665781) | |
| 721-841, gnl|tetNig1|chrUn_random (47700887-47700761) | |
| 900-1852, gnl|bosTau2|chr16 (13957093-13958061) | |
| 900-1852, gnl|Hg17|chr1 (220269271-220270276) | |
| 900-1852, gnl|Mm7|chr1 (182453030-182452053) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-127, gnl|bosTau2|chr16 (13940562-13940688) | |
| 1-127, gnl|Hg17|chr1 (220249962-220250088) | |
| 1-127, gnl|Mm7|chr1 (182469122-182468996) | |
| 136-349, gnl|bosTau2|chr16 (13943624-13943837) | |
| 136-349, gnl|canFam2|chr7 (43312651-43312515) | |
| 136-349, gnl|danRer3|chr13 (43131584-43131466) | |
| 136-349, gnl|dasNov1|scaffold_214027 (3989-3853) | |
| 136-349, gnl|echTel1|scaffold_222925 (71-191) | |
| 136-349, gnl|fr1|chrUn (270387784-270387648) | |
| 136-349, gnl|galGal2|chr3 (14028910-14028774) | |
| 136-349, gnl|hg17|chr1 (220253705-220253841) | |
| 136-349, gnl|Hg17|chr1 (220253705-220253918) | |
| 136-349, gnl|loxAfr1|scaffold_14483 (4399-4533) | |
| 136-349, gnl|mm7|chr1 (182466457-182466321) | |
| 136-349, gnl|Mm7|chr1 (182466455-182466242) | |
| 136-349, gnl|monDom2|scaffold_13 (31021318-31021454) | |
| 136-349, gnl|oryCun1|scaffold_32449 (154-15) | |
| 136-349, gnl|panTro1|chr1 (204212914-204213050) | |
| 136-349, gnl|rheMac2|chr1 (146572611-146572475) | |
| 136-349, gnl|rn3|chr13 (98677294-98677158) | |
| 136-349, gnl|tetNig1|chrUn_random (47703019-47702883) | |
| 136-349, gnl|xenTro1|scaffold_550 (554586-554450) | |
| 159-336, gnl|bosTau2|chr10 (17226392-17226569) | |
| 159-336, gnl|canFam2|chr30 (12365999-12366137) | |
| 159-336, gnl|danRer3|chr20 (26664132-26664270) | |
| 159-336, gnl|dasNov1|scaffold_214027 (3994-3853) | |
| 159-336, gnl|echTel1|scaffold_232875 (15573-15688) | |
| 159-336, gnl|fr1|chrUn (181869097-181868959) | |
| 159-336, gnl|galGal2|chr5 (22918011-22918149) | |
| 159-336, gnl|hg17|chr15 (40482277-40482415) | |
| 159-336, gnl|Hg17|chr15 (40482302-40482479) | |
| 159-336, gnl|loxAfr1|scaffold_4375 (18822-18687) | |
| 159-336, gnl|mm7|chr2 (120236707-120236845) | |
| 159-336, gnl|Mm7|chr2 (120236732-120236909) | |
| 159-336, gnl|monDom2|scaffold_53 (12146867-12146727) | |
| 159-336, gnl|oryCun1|scaffold_148722 (8096-8233) | |
| 159-336, gnl|panTro1|chr16 (40462816-40462954) | |
| 159-336, gnl|rheMac2|chr7 (20832754-20832892) | |
| 159-336, gnl|rn3|chr3 (106884779-106884917) | |
| 159-336, gnl|tetNig1|chr10 (11780281-11780419) | |
| 159-336, gnl|xenTro1|scaffold_117 (962967-962829) | |
| 721-841, gnl|bosTau2|chr16 (13954909-13955029) | |
| 721-841, gnl|canFam2|chr7 (43305458-43305325) | |
| 721-841, gnl|danRer3|chr13 (43124094-43123968) | |
| 721-841, gnl|dasNov1|scaffold_266949 (1445-1312) | |
| 721-841, gnl|echTel1|scaffold_276825 (46629-46503) | |
| 721-841, gnl|fr1|chrUn (270385320-270385186) | |
| 721-841, gnl|galGal2|chr3 (14024024-14023850) | |
| 721-841, gnl|hg17|chr1 (220266241-220266374) | |
| 721-841, gnl|Hg17|chr1 (220266243-220266363) | |
| 721-841, gnl|loxAfr1|scaffold_14483 (16288-16421) | |
| 721-841, gnl|mm7|chr1 (182455597-182455464) | |
| 721-841, gnl|Mm7|chr1 (182455593-182455473) | |
| 721-841, gnl|monDom2|scaffold_13 (31040171-31040304) | |
| 721-841, gnl|panTro1|chr1 (204225482-204225615) | |
| 721-841, gnl|rheMac2|chr1 (146561817-146561684) | |
| 721-841, gnl|rn3|chr13 (98665911-98665781) | |
| 721-841, gnl|tetNig1|chrUn_random (47700887-47700761) | |
| 900-1852, gnl|bosTau2|chr16 (13957093-13958061) | |
| 900-1852, gnl|Hg17|chr1 (220269271-220270276) | |
| 900-1852, gnl|Mm7|chr1 (182453030-182452053) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| eru (0.480192) | |
| cga (0.279096) | |
| che (0.272628) | |
| ova (0.258264) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| jca (0.22792) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cut (0.169924) | |
| nco (0.161734) | |
| ctl (0.153069) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.480192) | |
| cga (0.279096) | |
| che (0.272628) | |
| ova (0.258264) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| jca (0.22792) | |
| mas (0.210305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cut (0.169924) | |
| nco (0.161734) | |
| ctl (0.153069) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| eje (0.0988338) |