Ss1.1-Utr1-UTR010023H04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCACACGGACTACAGGGGAGTTCTGTTGGAAGTTGCAAAGTCCTAGAGCCTCCAGAGGG CTGTCGGCGCAGTAGCAGCGAGCAGCAGCGTCCGCGCGCTCCGGCGAGGGGCAGAAGAGC TCGAGGGAGCACGGGGGCAGCAGGAGCTAAAGCCGAACGCGGACCCAGCCCGGGACCCAC CGCCGCCCCAAGCCGCCTAGCAGAGCCCCAGCCATGGCACACCAGCTCCTGTGCTGCGAG ATGGAGACCATCCGCCGGGCGTACCCCGATGCCAACCTCCTCAACGATCGGGTGCTGCGG GCCATGCTCAAGGCGGAGGAGACCTGCTCGCCCTCCGTGTCCTACTTCAAGTGCGTGCAG AAGGAAATCCTGCCTTCCATGCGGAAGATCGTGGCCACCTGGATGCTGGAGGTCTGCGAG GAGCAGAAGTGCGAGGAGGAGGTCTTCCCGCTGGCCATGAACTACCTGGACCGCTTCCTG TCCCTGGAGCCCGTGAAAAAGAGCCGCCTGCAGCTGCTGGGAGCCACCTGCATGTTCGTG GCCTCGAAGATGAAGGAGACCATCCCCCTGACGGCCGAGAAGTTGTGCATCTACACCGAC AACTCCATCCGGCCGGACGAGCTGCTGCAAATGGAGCTGCTCCTGGTGAACAAACTCAAG TGGAACCTGGCGGCCATGACCCCGCACGACTTCATCGAGCACTTCCTCTCCAAAATGCCG GTGGCCGAGGAGAACAAACAGATCATCCGCAAACACGCGCAGACCTTCGTCGCCCTCTGT GCCACAGACGTGAAGTTCATTTCCAACCCGCCCTCCATGGTGGCCGCCGGGAGCGTGGTG GCGGCCGTGCAAGGTCTGCACCTGGGAAGTTCCAACAGCTTCCTGTCCTACCACCGCCTG ACGCGGTTCCTCTCCAGGGTGATCAGGTGTGACCCGGACTGCCTCCGCGCCTGCCAGGAG CAGATCGAAGCCCTTCTGGAATCCAGCCTGCGCCAGGCCCAGCAGCAGACCTTGGACCCC AAGGCCGCGGAGGAGGAGGAGGAAGAGGAGGAGGTGGACCTGGCCTGCACGCCCACCGAT GTTCGCGACGTGAACATTTGAGGCGCCGCAGCCAGGGAGGGGCCGGCCCGCGCTCCCCAG ACGGAGCCGCTCAGGCCCGGCCACCCCCGGGGGAGAGGCCCGCCCCTCACCACTGGCGTT CCCCTCTGCTCTGTCTCCCTCCCACCTCTGACTTAAGCGAAAGGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCACACGGACTACAGGGGAGTTCTGTTGGAAGTTGCAAAGTCCTAGAGCCTCCAGAGGG CTGTCGGCGCAGTAGCAGCGAGCAGCAGCGTCCGCGCGCTCCGGCGAGGGGCAGAAGAGC TCGAGGGAGCACGGGGGCAGCAGGAGCTAAAGCCGAACGCGGACCCAGCCCGGGACCCAC CGCCGCCCCAAGCCGCCTAGCAGAGCCCCAGCCATGGCACACCAGCTCCTGTGCTGCGAG ATGGAGACCATCCGCCGGGCGTACCCCGATGCCAACCTCCTCAACGATCGGGTGCTGCGG GCCATGCTCAAGGCGGAGGAGACCTGCTCGCCCTCCGTGTCCTACTTCAAGTGCGTGCAG AAGGAAATCCTGCCTTCCATGCGGAAGATCGTGGCCACCTGGATGCTGGAGGTCTGCGAG GAGCAGAAGTGCGAGGAGGAGGTCTTCCCGCTGGCCATGAACTACCTGGACCGCTTCCTG TCCCTGGAGCCCGTGAAAAAGAGCCGCCTGCAGCTGCTGGGAGCCACCTGCATGTTCGTG GCCTCGAAGATGAAGGAGACCATCCCCCTGACGGCCGAGAAGTTGTGCATCTACACCGAC AACTCCATCCGGCCGGACGAGCTGCTGCAAATGGAGCTGCTCCTGGTGAACAAACTCAAG TGGAACCTGGCGGCCATGACCCCGCACGACTTCATCGAGCACTTCCTCTCCAAAATGCCG GTGGCCGAGGAGAACAAACAGATCATCCGCAAACACGCGCAGACCTTCGTCGCCCTCTGT GCCACAGACGTGAAGTTCATTTCCAACCCGCCCTCCATGGTGGCCGCCGGGAGCGTGGTG GCGGCCGTGCAAGGTCTGCACCTGGGAAGTTCCAACAGCTTCCTGTCCTACCACCGCCTG ACGCGGTTCCTCTCCAGGGTGATCAGGTGTGACCCGGACTGCCTCCGCGCCTGCCAGGAG CAGATCGAAGCCCTTCTGGAATCCAGCCTGCGCCAGGCCCAGCAGCAGACCTTGGACCCC AAGGCCGCGGAGGAGGAGGAGGAAGAGGAGGAGGTGGACCTGGCCTGCACGCCCACCGAT GTTCGCGACGTGAACATTTGAGGCGCCGCAGCCAGGGAGGGGCCGGCCCGCGCTCCCCAG ACGGAGCCGCTCAGGCCCGGCCACCCCCGGGGGAGAGGCCCGCCCCTCACCACTGGCGTT CCCCTCTGCTCTGTCTCCCTCCCACCTCTGACTTAAGCGAAAGGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 403-633, gnl|bosTau2|chr5 (62897294-62897064) | |
| 403-633, gnl|canFam2|chr27 (43620666-43620409) | |
| 403-633, gnl|canFam2|chr27 (43620651-43620435) | |
| 403-633, gnl|danRer3|chrUn (177784310-177784076) | |
| 403-633, gnl|danRer3|chrUn (177784318-177784086) | |
| 403-633, gnl|dasNov1|scaffold_3629 (35813-35560) | |
| 403-633, gnl|dasNov1|scaffold_3629 (35801-35582) | |
| 403-633, gnl|echTel1|scaffold_314074 (40791-40552) | |
| 403-633, gnl|echTel1|scaffold_314074 (40785-40569) | |
| 403-633, gnl|fr1|chrUn (96127879-96128142) | |
| 403-633, gnl|fr1|chrUn (311201036-311200820) | |
| 403-633, gnl|galGal2|chr1 (185814848-185815082) | |
| 403-633, gnl|galGal2|chr1 (185814844-185815064) | |
| 403-633, gnl|hg17|chr11 (62767420-62767643) | |
| 403-633, gnl|hg17|chr12 (4255416-4255674) | |
| 403-633, gnl|Hg17|chr12 (4255423-4255653) | |
| 403-633, gnl|loxAfr1|scaffold_1930 (112993-112735) | |
| 403-633, gnl|loxAfr1|scaffold_1930 (112985-112762) | |
| 403-633, gnl|mm7|chr6 (127173398-127173144) | |
| 403-633, gnl|mm7|chr6 (127173385-127173166) | |
| 403-633, gnl|Mm7|chr6 (127173389-127173158) | |
| 403-633, gnl|monDom2|scaffold_31 (21412051-21411808) | |
| 403-633, gnl|monDom2|scaffold_31 (21412051-21411832) | |
| 403-633, gnl|oryCun1|scaffold_193706 (3158-2943) | |
| 403-633, gnl|oryCun1|scaffold_193706 (3161-2943) | |
| 403-633, gnl|panTro1|chr10 (4513814-4514072) | |
| 403-633, gnl|panTro1|chr9 (63751424-63751647) | |
| 403-633, gnl|rheMac2|chr14 (5126916-5126676) | |
| 403-633, gnl|rheMac2|chr14 (5126920-5126705) | |
| 403-633, gnl|rn3|chr4 (163789597-163789344) | |
| 403-633, gnl|rn3|chr4 (163789586-163789366) | |
| 403-633, gnl|tetNig1|chr13 (1094100-1093869) | |
| 403-633, gnl|tetNig1|chr13 (1094090-1093874) | |
| 403-633, gnl|xenTro1|scaffold_683 (274615-274379) | |
| 403-633, gnl|xenTro1|scaffold_683 (274603-274384) | |
| 410-625, gnl|bosTau2|chr23 (15424610-15424395) | |
| 410-625, gnl|canFam2|chr12 (13603689-13603478) | |
| 410-625, gnl|danRer3|chrUn (13930376-13930589) | |
| 410-625, gnl|dasNov1|scaffold_3629 (35793-35582) | |
| 410-625, gnl|fr1|chrUn (306743200-306743411) | |
| 410-625, gnl|galGal2|chr26 (3510893-3510680) | |
| 410-625, gnl|hg17|chr18 (72592260-72592471) | |
| 410-625, gnl|Hg17|chr6 (42016303-42016088) | |
| 410-625, gnl|loxAfr1|scaffold_1930 (112973-112762) | |
| 410-625, gnl|Mm7|chr17 (45731272-45731487) | |
| 410-625, gnl|mm7|chr4 (138724423-138724208) | |
| 410-625, gnl|monDom2|scaffold_42 (860744-860957) | |
| 410-625, gnl|oryCun1|scaffold_203344 (825-1038) | |
| 410-625, gnl|panTro1|chr17 (69752850-69753061) | |
| 410-625, gnl|rheMac2|chr9 (30553546-30553353) | |
| 410-625, gnl|rn3|chr8 (77091341-77091562) | |
| 410-625, gnl|tetNig1|chrUn_random (89808010-89807801) | |
| 933-1130, gnl|bosTau2|chr29 (40820632-40820830) | |
| 933-1130, gnl|Hg17|chr11 (69175063-69175287) | |
| 933-1130, gnl|Mm7|chr7 (141358019-141357788) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 403-633, gnl|bosTau2|chr5 (62897294-62897064) | |
| 403-633, gnl|canFam2|chr27 (43620666-43620409) | |
| 403-633, gnl|canFam2|chr27 (43620651-43620435) | |
| 403-633, gnl|danRer3|chrUn (177784310-177784076) | |
| 403-633, gnl|danRer3|chrUn (177784318-177784086) | |
| 403-633, gnl|dasNov1|scaffold_3629 (35813-35560) | |
| 403-633, gnl|dasNov1|scaffold_3629 (35801-35582) | |
| 403-633, gnl|echTel1|scaffold_314074 (40791-40552) | |
| 403-633, gnl|echTel1|scaffold_314074 (40785-40569) | |
| 403-633, gnl|fr1|chrUn (96127879-96128142) | |
| 403-633, gnl|fr1|chrUn (311201036-311200820) | |
| 403-633, gnl|galGal2|chr1 (185814848-185815082) | |
| 403-633, gnl|galGal2|chr1 (185814844-185815064) | |
| 403-633, gnl|hg17|chr11 (62767420-62767643) | |
| 403-633, gnl|hg17|chr12 (4255416-4255674) | |
| 403-633, gnl|Hg17|chr12 (4255423-4255653) | |
| 403-633, gnl|loxAfr1|scaffold_1930 (112993-112735) | |
| 403-633, gnl|loxAfr1|scaffold_1930 (112985-112762) | |
| 403-633, gnl|mm7|chr6 (127173398-127173144) | |
| 403-633, gnl|mm7|chr6 (127173385-127173166) | |
| 403-633, gnl|Mm7|chr6 (127173389-127173158) | |
| 403-633, gnl|monDom2|scaffold_31 (21412051-21411808) | |
| 403-633, gnl|monDom2|scaffold_31 (21412051-21411832) | |
| 403-633, gnl|oryCun1|scaffold_193706 (3158-2943) | |
| 403-633, gnl|oryCun1|scaffold_193706 (3161-2943) | |
| 403-633, gnl|panTro1|chr10 (4513814-4514072) | |
| 403-633, gnl|panTro1|chr9 (63751424-63751647) | |
| 403-633, gnl|rheMac2|chr14 (5126916-5126676) | |
| 403-633, gnl|rheMac2|chr14 (5126920-5126705) | |
| 403-633, gnl|rn3|chr4 (163789597-163789344) | |
| 403-633, gnl|rn3|chr4 (163789586-163789366) | |
| 403-633, gnl|tetNig1|chr13 (1094100-1093869) | |
| 403-633, gnl|tetNig1|chr13 (1094090-1093874) | |
| 403-633, gnl|xenTro1|scaffold_683 (274615-274379) | |
| 403-633, gnl|xenTro1|scaffold_683 (274603-274384) | |
| 410-625, gnl|bosTau2|chr23 (15424610-15424395) | |
| 410-625, gnl|canFam2|chr12 (13603689-13603478) | |
| 410-625, gnl|danRer3|chrUn (13930376-13930589) | |
| 410-625, gnl|dasNov1|scaffold_3629 (35793-35582) | |
| 410-625, gnl|fr1|chrUn (306743200-306743411) | |
| 410-625, gnl|galGal2|chr26 (3510893-3510680) | |
| 410-625, gnl|hg17|chr18 (72592260-72592471) | |
| 410-625, gnl|Hg17|chr6 (42016303-42016088) | |
| 410-625, gnl|loxAfr1|scaffold_1930 (112973-112762) | |
| 410-625, gnl|Mm7|chr17 (45731272-45731487) | |
| 410-625, gnl|mm7|chr4 (138724423-138724208) | |
| 410-625, gnl|monDom2|scaffold_42 (860744-860957) | |
| 410-625, gnl|oryCun1|scaffold_203344 (825-1038) | |
| 410-625, gnl|panTro1|chr17 (69752850-69753061) | |
| 410-625, gnl|rheMac2|chr9 (30553546-30553353) | |
| 410-625, gnl|rn3|chr8 (77091341-77091562) | |
| 410-625, gnl|tetNig1|chrUn_random (89808010-89807801) | |
| 933-1130, gnl|bosTau2|chr29 (40820632-40820830) | |
| 933-1130, gnl|Hg17|chr11 (69175063-69175287) | |
| 933-1130, gnl|Mm7|chr7 (141358019-141357788) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nlu (0.191681) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| clu (0.119646) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nlu (0.191681) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eep (0.122564) | |
| clu (0.119646) |