Non-Coding RNA Search

Ss1.1-Utr1-UTR010024D02.5

Sequence:


               
               TCCCTCTGGGGTTCAAGGATGTCACCATGAATAGTTTTCCTCTGGTTCCCAGGCTCACCA
CAGGAAGATGAACCAGAAACCCAACCCAGCTCAGACAAAGGGCAGGGGCCTAGCCCAGGA
TCAAGAGTCTTCCTTGGAGAAGATCCTCCCAGCAGCTCAGGAGGGACCTTGTTTGGCGGG
GGCCGGGTGGACTTTCCAGTCACGCTCACAGCAGGCTGTCCTTCTTCTGGTTTGGCTATT
CCTGAGGTCTCTGAAGGAAGTTCAGGAGGTTGAGTACTGAATGGTTTCTTTTGCTCTAGT
TTTTCTAACACAGAGTCCTCATCTGTTGGCAAGCTGTGCTTCTGGCCTGTGGCTGTGACT
GGTTCTGGTGACATCACGAGAGGAGGTGCAGCTAACTGTTCCTCATTGCGGAGAGACTCT
AACTGGGAGTCCTCACTTGTTTCTTCCTGTGTCCACATAATTCCCATGTCCTTAACTGGA
ACCGGTGCCACCTCTGCTTCTGATGATGGTGCAAGGGTCTTGGCTGAAGCATCATTGTTG
GATGGGGCCATCTCAGTTTTTGGAGGCACAGCAACATCCTTAGTCACCTCTGTCTCTGGG
AGCACAGCCACATCTTTGCCCAGGGCCATCTCTGTTTCTGGAGGTAAAACCACATACTTG
CCCAGGGCTACCACTGTTTCTGGAGGCAGGGCAACATCCTTGCCCCGGGCCACCTCTATT
CCTGGGGGTGAAGCCATGTCCTTGACTGGTGTGACTTCTGTTTCTGGAGGTGAAACCACA
TCCTTGCCCAGGGCCACCTCTATTCCTGGGGGTGAAGCCATATCCTTGACTGGTGTGACT
TCTGTTTCTGGAGGTGTGGCCATATTCCCAGTCAGGGCCAACTCTGTTTCTGAGGACAGG
GCTACATCCTTGGCTGAGGACAGTTCTGTGGCTGATACAATGTCTGAAACCAGTTCCACC
TCTATTTCTGAGAGTGATGCTATACACTGGGCTGAGGCCATCTCTTGGTCTGTAGGTAGT
ACTATGACCTCACCTTGGGCCACATCCATTTTTACAGGTAATGTCCTCTCTGTTTCTTTG
AATAGTAGTATGTCCTTGGCCGGGGCTGCTTCTGTTTCTGTGGGCAGCACCATGTTCTCG
GCCAAAGACACGTCTGTTTCTGTGGGCCATACAACATCCTTAACCGGTGCTTCCTCTGTT
TCTGTGGGTAGTGCTATGTCCTTGCCTAGGACCATGTCTGATTTGATGGATGATTCTGTG
TTCCTGGCCAGTGCCACATCTGGTTTGGGAGGTGGTTCCATGTCTTTAGCCAATGCCACC
TCTGTTTCTGTGGCTGAGACCACATCCTTGGCCGGGATCAATTCTGATTCTCTAGATGGT
GCCATGTCAACAGCCATCAGTCCCATCATCATTTCCAATGCTTTCGTTGGTGCCCTCTCT
TCTAATGATGACATTTCTACATCCTCAGCTGGCTCTGCCATGGGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTCTGGGGTTCAAGGATGTCACCATGAATAGTTTTCCTCTGGTTCCCAGGCTCACCA
CAGGAAGATGAACCAGAAACCCAACCCAGCTCAGACAAAGGGCAGGGGCCTAGCCCAGGA
TCAAGAGTCTTCCTTGGAGAAGATCCTCCCAGCAGCTCAGGAGGGACCTTGTTTGGCGGG
GGCCGGGTGGACTTTCCAGTCACGCTCACAGCAGGCTGTCCTTCTTCTGGTTTGGCTATT
CCTGAGGTCTCTGAAGGAAGTTCAGGAGGTTGAGTACTGAATGGTTTCTTTTGCTCTAGT
TTTTCTAACACAGAGTCCTCATCTGTTGGCAAGCTGTGCTTCTGGCCTGTGGCTGTGACT
GGTTCTGGTGACATCACGAGAGGAGGTGCAGCTAACTGTTCCTCATTGCGGAGAGACTCT
AACTGGGAGTCCTCACTTGTTTCTTCCTGTGTCCACATAATTCCCATGTCCTTAACTGGA
ACCGGTGCCACCTCTGCTTCTGATGATGGTGCAAGGGTCTTGGCTGAAGCATCATTGTTG
GATGGGGCCATCTCAGTTTTTGGAGGCACAGCAACATCCTTAGTCACCTCTGTCTCTGGG
AGCACAGCCACATCTTTGCCCAGGGCCATCTCTGTTTCTGGAGGTAAAACCACATACTTG
CCCAGGGCTACCACTGTTTCTGGAGGCAGGGCAACATCCTTGCCCCGGGCCACCTCTATT
CCTGGGGGTGAAGCCATGTCCTTGACTGGTGTGACTTCTGTTTCTGGAGGTGAAACCACA
TCCTTGCCCAGGGCCACCTCTATTCCTGGGGGTGAAGCCATATCCTTGACTGGTGTGACT
TCTGTTTCTGGAGGTGTGGCCATATTCCCAGTCAGGGCCAACTCTGTTTCTGAGGACAGG
GCTACATCCTTGGCTGAGGACAGTTCTGTGGCTGATACAATGTCTGAAACCAGTTCCACC
TCTATTTCTGAGAGTGATGCTATACACTGGGCTGAGGCCATCTCTTGGTCTGTAGGTAGT
ACTATGACCTCACCTTGGGCCACATCCATTTTTACAGGTAATGTCCTCTCTGTTTCTTTG
AATAGTAGTATGTCCTTGGCCGGGGCTGCTTCTGTTTCTGTGGGCAGCACCATGTTCTCG
GCCAAAGACACGTCTGTTTCTGTGGGCCATACAACATCCTTAACCGGTGCTTCCTCTGTT
TCTGTGGGTAGTGCTATGTCCTTGCCTAGGACCATGTCTGATTTGATGGATGATTCTGTG
TTCCTGGCCAGTGCCACATCTGGTTTGGGAGGTGGTTCCATGTCTTTAGCCAATGCCACC
TCTGTTTCTGTGGCTGAGACCACATCCTTGGCCGGGATCAATTCTGATTCTCTAGATGGT
GCCATGTCAACAGCCATCAGTCCCATCATCATTTCCAATGCTTTCGTTGGTGCCCTCTCT
TCTAATGATGACATTTCTACATCCTCAGCTGGCTCTGCCATGGGCTGC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               71-190, - strand, RNAz p=0.94403
               

               
               76-186, - strand, RNAz p=0.538287
               

               
               796-915, - strand, RNAz p=0.915419

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-190, - strand, RNAz p=0.94403
               

               
               76-186, - strand, RNAz p=0.538287
               

               
               796-915, - strand, RNAz p=0.915419

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB209377, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB209377, -

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-190, gnl|bosTau2|chr22 (40691946-40692135)
               

               
               1-190, gnl|canFam2|chr20 (44048995-44048437)
               

               
               1-190, gnl|dasNov1|scaffold_16826 (86682-87193)
               

               
               1-190, gnl|echTel1|scaffold_318843 (84676-85250)
               

               
               1-190, gnl|hg17|chr3 (47928573-47929199)
               

               
               1-190, gnl|Hg17|chr3 (47928657-47928844)
               

               
               1-190, gnl|loxAfr1|scaffold_17581 (45280-45858)
               

               
               1-190, gnl|mm7|chr9 (109734466-109733931)
               

               
               1-190, gnl|Mm7|chr9 (109734380-109734203)
               

               
               1-190, gnl|monDom2|scaffold_5 (82918826-82919425)
               

               
               1-190, gnl|oryCun1|scaffold_182706 (10620-10035)
               

               
               1-190, gnl|panTro1|chr2 (49406321-49406942)
               

               
               1-190, gnl|rheMac2|chr2 (88600895-88600290)
               

               
               1-190, gnl|rn3|chr8 (114416412-114415885)
               


               
               365-1329, gnl|bosTau2|chr22 (40694960-40695918)
               

               
               365-1329, gnl|Hg17|chr3 (47932445-47933559)
               

               
               365-1329, gnl|Mm7|chr9 (109732361-109731328)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-190, gnl|bosTau2|chr22 (40691946-40692135)
               

               
               1-190, gnl|canFam2|chr20 (44048995-44048437)
               

               
               1-190, gnl|dasNov1|scaffold_16826 (86682-87193)
               

               
               1-190, gnl|echTel1|scaffold_318843 (84676-85250)
               

               
               1-190, gnl|hg17|chr3 (47928573-47929199)
               

               
               1-190, gnl|Hg17|chr3 (47928657-47928844)
               

               
               1-190, gnl|loxAfr1|scaffold_17581 (45280-45858)
               

               
               1-190, gnl|mm7|chr9 (109734466-109733931)
               

               
               1-190, gnl|Mm7|chr9 (109734380-109734203)
               

               
               1-190, gnl|monDom2|scaffold_5 (82918826-82919425)
               

               
               1-190, gnl|oryCun1|scaffold_182706 (10620-10035)
               

               
               1-190, gnl|panTro1|chr2 (49406321-49406942)
               

               
               1-190, gnl|rheMac2|chr2 (88600895-88600290)
               

               
               1-190, gnl|rn3|chr8 (114416412-114415885)
               


               
               365-1329, gnl|bosTau2|chr22 (40694960-40695918)
               

               
               365-1329, gnl|Hg17|chr3 (47932445-47933559)
               

               
               365-1329, gnl|Mm7|chr9 (109732361-109731328)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mas (0.210305)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	71-190, - strand, RNAz p=0.94403
	76-186, - strand, RNAz p=0.538287
	796-915, - strand, RNAz p=0.915419

	1-190, gnl\|bosTau2\|chr22 (40691946-40692135)
	1-190, gnl\|canFam2\|chr20 (44048995-44048437)
	1-190, gnl\|dasNov1\|scaffold_16826 (86682-87193)
	1-190, gnl\|echTel1\|scaffold_318843 (84676-85250)
	1-190, gnl\|hg17\|chr3 (47928573-47929199)
	1-190, gnl\|Hg17\|chr3 (47928657-47928844)
	1-190, gnl\|loxAfr1\|scaffold_17581 (45280-45858)
	1-190, gnl\|mm7\|chr9 (109734466-109733931)
	1-190, gnl\|Mm7\|chr9 (109734380-109734203)
	1-190, gnl\|monDom2\|scaffold_5 (82918826-82919425)
	1-190, gnl\|oryCun1\|scaffold_182706 (10620-10035)
	1-190, gnl\|panTro1\|chr2 (49406321-49406942)
	1-190, gnl\|rheMac2\|chr2 (88600895-88600290)
	1-190, gnl\|rn3\|chr8 (114416412-114415885)

	365-1329, gnl\|bosTau2\|chr22 (40694960-40695918)
	365-1329, gnl\|Hg17\|chr3 (47932445-47933559)
	365-1329, gnl\|Mm7\|chr9 (109732361-109731328)