Non-Coding RNA Search

Ss1.1-Utr1-UTR010025C01.5

Sequence:


               
               AACTTCATCAGCAGGACACTTAGATGGCTGCTAGTTGCGTGCAAACCCAATGCACCGAGT
TATTAAAACTAACCCGTTCTAGGCTAAGCAGCCTTCTCTTAGCGGTGAAATACAGAGTGC
AACTACTTGAAAAAACTATTTATACTAGCTGTGAGTAGCCTAGTCCAAGCCCTCTGATTG
GGTCGAAGCAAAGTAAGTTAACAGCCAATGGAAACGTAGACCTGCAAGTTTCATTTACAT
TCGTGTTTGTGACGCCACAATAAAATTAATCCAATCGTGAGCGAAACCTTACTAACCTCA
TTTGAATACCGCATCTATAAATAAATGTGGCCTCACCCTGACTGACTATTTTCCCAGGTG
TTAGCCTTGCAGTTCTAACTTTTAACGCTGCTATGCCTGAACCCACCAAATCTGCTCCCG
CCCCGAAGAAGGGGTCCAAGAAAGCGGTGACTAAGGCGCAGAAGAAGGATGGCAAGAAGC
GAAAGCGCAGCCGCAAGGAGAGCTACTCCGTGTACGTGTACAAGGTGCTGAAGCAGGTCC
ACCCGGACACCGGCATCTCGTCCAAAGCCATGGGCATCATGAACTCCTTTGTCAACGACA
TCTTCGAGCGCATCGCGGGTGAGGCCTCGCGGCTGGCGCATTACAACAAGCGCTCGACCA
TCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGC
ACGCCGTGTCCGAGGGCACTAAGGCCGTCACCAAGTACACCAGCTCCAAATAAATTTGCC
AAGGGGAGATACCAGTGCAGAGAAGAAATGAATGCAAACAGTAACTGAAAATGAGAATTT
GGTATAGAAGTTATGAAGTATGACAACTGATCTGCCCGAGATGATTGATCATTGTGTCTA
TCACACTCAAATCCCACTTATCATGATTTACTGCACATTGATTTATCAAAAAGGAGATCA
TTCATTACCTGACTGGAAGAGCCTAAACAGGTGTTTTAACTTTTTCATTTTATTTTTATT
TAAATTATGAAAATAGAATTTACTTCGGTTACAGGTCTAATTACCGGGAATACATTATTT
ACTCTGGACTACCTTTGTTGGGAGAAATCTGAATGAGAGAATGGCAAAACATCTGTAAAT
CAAATGGTACAGTTAATAAAATCTTTGGATAATTAGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTCATCAGCAGGACACTTAGATGGCTGCTAGTTGCGTGCAAACCCAATGCACCGAGT
TATTAAAACTAACCCGTTCTAGGCTAAGCAGCCTTCTCTTAGCGGTGAAATACAGAGTGC
AACTACTTGAAAAAACTATTTATACTAGCTGTGAGTAGCCTAGTCCAAGCCCTCTGATTG
GGTCGAAGCAAAGTAAGTTAACAGCCAATGGAAACGTAGACCTGCAAGTTTCATTTACAT
TCGTGTTTGTGACGCCACAATAAAATTAATCCAATCGTGAGCGAAACCTTACTAACCTCA
TTTGAATACCGCATCTATAAATAAATGTGGCCTCACCCTGACTGACTATTTTCCCAGGTG
TTAGCCTTGCAGTTCTAACTTTTAACGCTGCTATGCCTGAACCCACCAAATCTGCTCCCG
CCCCGAAGAAGGGGTCCAAGAAAGCGGTGACTAAGGCGCAGAAGAAGGATGGCAAGAAGC
GAAAGCGCAGCCGCAAGGAGAGCTACTCCGTGTACGTGTACAAGGTGCTGAAGCAGGTCC
ACCCGGACACCGGCATCTCGTCCAAAGCCATGGGCATCATGAACTCCTTTGTCAACGACA
TCTTCGAGCGCATCGCGGGTGAGGCCTCGCGGCTGGCGCATTACAACAAGCGCTCGACCA
TCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGC
ACGCCGTGTCCGAGGGCACTAAGGCCGTCACCAAGTACACCAGCTCCAAATAAATTTGCC
AAGGGGAGATACCAGTGCAGAGAAGAAATGAATGCAAACAGTAACTGAAAATGAGAATTT
GGTATAGAAGTTATGAAGTATGACAACTGATCTGCCCGAGATGATTGATCATTGTGTCTA
TCACACTCAAATCCCACTTATCATGATTTACTGCACATTGATTTATCAAAAAGGAGATCA
TTCATTACCTGACTGGAAGAGCCTAAACAGGTGTTTTAACTTTTTCATTTTATTTTTATT
TAAATTATGAAAATAGAATTTACTTCGGTTACAGGTCTAATTACCGGGAATACATTATTT
ACTCTGGACTACCTTTGTTGGGAGAAATCTGAATGAGAGAATGGCAAAACATCTGTAAAT
CAAATGGTACAGTTAATAAAATCTTTGGATAATTAGAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5T008_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T008_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               641-760, - strand, RNAz p=0.530309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               641-760, - strand, RNAz p=0.530309

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               95-783, gnl|bosTau2|chr23 (24170244-24170932)
               

               
               95-783, gnl|Hg17|chr6 (26266066-26266767)
               


               
               393-775, gnl|bosTau2|chr10 (15825821-15825439)
               

               
               393-775, gnl|Hg17|chr6 (27883663-27883281)
               

               
               393-775, gnl|Mm7|chr13 (21120112-21120494)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-783, gnl|bosTau2|chr23 (24170244-24170932)
               

               
               95-783, gnl|Hg17|chr6 (26266066-26266767)
               


               
               393-775, gnl|bosTau2|chr10 (15825821-15825439)
               

               
               393-775, gnl|Hg17|chr6 (27883663-27883281)
               

               
               393-775, gnl|Mm7|chr13 (21120112-21120494)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               kid (0.648677)
               

               
               nmm (0.531209)
               

               
               rec (0.519211)
               

               
               cut (0.509771)
               

               
               col (0.390016)
               

               
               mgm (0.360685)
               

               
               pgl (0.35545)
               

               
               med (0.348756)
               

               
               cki (0.330469)
               

               
               lun (0.300978)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.648677)
               

               
               nmm (0.531209)
               

               
               rec (0.519211)
               

               
               cut (0.509771)
               

               
               col (0.390016)
               

               
               mgm (0.360685)
               

               
               pgl (0.35545)
               

               
               med (0.348756)
               

               
               cki (0.330469)
               

               
               lun (0.300978)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	95-783, gnl\|bosTau2\|chr23 (24170244-24170932)
	95-783, gnl\|Hg17\|chr6 (26266066-26266767)

	393-775, gnl\|bosTau2\|chr10 (15825821-15825439)
	393-775, gnl\|Hg17\|chr6 (27883663-27883281)
	393-775, gnl\|Mm7\|chr13 (21120112-21120494)

	kid (0.648677)
	nmm (0.531209)
	rec (0.519211)
	cut (0.509771)
	col (0.390016)
	mgm (0.360685)
	pgl (0.35545)
	med (0.348756)
	cki (0.330469)
	lun (0.300978)
	cst (0.280073)
	ssp (0.271039)
	ldo (0.194005)
	nlu (0.191681)
	sag (0.182715)
	fty (0.17584)
	cje (0.165235)
	cli (0.152812)
	bfe (0.149858)
	fat (0.147427)
	csk (0.140746)
	ste (0.135208)
	cov (0.132153)
	cbl (0.114797)
	eje (0.0988338)