Non-Coding RNA Search

Ss1.1-Utr1-UTR010025C03.5

Sequence:


               
               AAAAAACATACTTTCATGTTTTGTGAGTTTTCCTTTTTACTTTTCCGAAAAACAAAAAAA
CAACAACAAAAAAAGGCGGGAAAACTACAGAATCACACAAGGCCTACCAGATGGTACTTT
GCCATCGGAATTAGGATGGGTGTCTTCAATTTGAATTTCCTAGGCTCTTTAGCAAAGCCC
AAAGGGCAGTATCCACAGTTTGCATGAATTACGACTGTAAGCCCTTGCCCACTTCAGTTC
TCTGTCTTTGTCCTTGATCTTCTCTGCCAAAATAATGTGAGTGTACAGAAGTACTTCTGT
ATATTTCAGCTTATGACAGTTTGTATTCAATTAGAGACCTTTTCTGTGGAAAGCTCAGTA
ATTTTTATTAAAAGATTGCTATTGTTCATGTAAAACATGAAAACCAGTTGTTCAGTGAAC
CGACAGTGTGGACTCCGGGCGGGATGAAAGGTCCAGGACTGTGGTCTCACTCAGCAGAAC
TTGCAGGAGAGCATTACAGTTGATGTTGTTTTCCTTCTGCCCTCGTGCAGTTTTGTTTCG
CTTCCTCTGCTCCTCCAGGTAACACAAGGTAACATCCTGACAGAAAGTGCCCCTGCCAGC
GGCACCCTCACCCCCCACCCCCCAGCCCCCCAGGAGCGCTAGTGGTCTCCGCCGCCTGGT
TTAGGCGCTGCCTTCCGGCCATGACTCAAGAGCGCTGTTGCTGTTATCTTTAGGTCTAAG
AGAAGACGTCCGATGCTGATGGGAGGCTGGTCTGTCAAGGTGTCCAGCAGCCGCCGTGTG
ATCCGGGAGCCTCTGTGTCATTCACGTGTCTGTCTCCACAGTTGTGCAAAATGGCAGATT
CTACCATCTGTGGGTCGTGCTTGCCAGACAGGTCTTCAATTTTGTATTTTTTGGAAAAGT
TGATATAGTTTCTTGGCGATTGTTATGAAAGGATCAAGCAATCAGGATAGCCATTTCTTT
AATATCCGTTTAAAATCTGTTCATTTCATGTTAGTGGGACCGTGAACTTGTCACCAAGCA
GAACTCTATATAAAACAAAATTTTAAACTCTTTGTGGCCTATATGTGTTTAATCCTGGTT
AAAGATAAAGCTTCTAATGCTGTTTTTCTTCAACCTATTAACCAGCTATAAAACACAGAC
CTTTATCAACAGCAGGCAAAGAATTTCAAGATTTATATACAAATAGACTATAAAGTCATG
TAATTTGAAAAGCGGTGTTTCATTATGAAAGAGCTCTCAAGATGCTTGTAAAGCTGATCT
AATTAAAAAGATGTATAAATGTTCTTGAAAAAATTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAACATACTTTCATGTTTTGTGAGTTTTCCTTTTTACTTTTCCGAAAAACAAAAAAA
CAACAACAAAAAAAGGCGGGAAAACTACAGAATCACACAAGGCCTACCAGATGGTACTTT
GCCATCGGAATTAGGATGGGTGTCTTCAATTTGAATTTCCTAGGCTCTTTAGCAAAGCCC
AAAGGGCAGTATCCACAGTTTGCATGAATTACGACTGTAAGCCCTTGCCCACTTCAGTTC
TCTGTCTTTGTCCTTGATCTTCTCTGCCAAAATAATGTGAGTGTACAGAAGTACTTCTGT
ATATTTCAGCTTATGACAGTTTGTATTCAATTAGAGACCTTTTCTGTGGAAAGCTCAGTA
ATTTTTATTAAAAGATTGCTATTGTTCATGTAAAACATGAAAACCAGTTGTTCAGTGAAC
CGACAGTGTGGACTCCGGGCGGGATGAAAGGTCCAGGACTGTGGTCTCACTCAGCAGAAC
TTGCAGGAGAGCATTACAGTTGATGTTGTTTTCCTTCTGCCCTCGTGCAGTTTTGTTTCG
CTTCCTCTGCTCCTCCAGGTAACACAAGGTAACATCCTGACAGAAAGTGCCCCTGCCAGC
GGCACCCTCACCCCCCACCCCCCAGCCCCCCAGGAGCGCTAGTGGTCTCCGCCGCCTGGT
TTAGGCGCTGCCTTCCGGCCATGACTCAAGAGCGCTGTTGCTGTTATCTTTAGGTCTAAG
AGAAGACGTCCGATGCTGATGGGAGGCTGGTCTGTCAAGGTGTCCAGCAGCCGCCGTGTG
ATCCGGGAGCCTCTGTGTCATTCACGTGTCTGTCTCCACAGTTGTGCAAAATGGCAGATT
CTACCATCTGTGGGTCGTGCTTGCCAGACAGGTCTTCAATTTTGTATTTTTTGGAAAAGT
TGATATAGTTTCTTGGCGATTGTTATGAAAGGATCAAGCAATCAGGATAGCCATTTCTTT
AATATCCGTTTAAAATCTGTTCATTTCATGTTAGTGGGACCGTGAACTTGTCACCAAGCA
GAACTCTATATAAAACAAAATTTTAAACTCTTTGTGGCCTATATGTGTTTAATCCTGGTT
AAAGATAAAGCTTCTAATGCTGTTTTTCTTCAACCTATTAACCAGCTATAAAACACAGAC
CTTTATCAACAGCAGGCAAAGAATTTCAAGATTTATATACAAATAGACTATAAAGTCATG
TAATTTGAAAAGCGGTGTTTCATTATGAAAGAGCTCTCAAGATGCTTGTAAAGCTGATCT
AATTAAAAAGATGTATAAATGTTCTTGAAAAAATTAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1169-1288, - strand, RNAz p=0.543589

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1169-1288, - strand, RNAz p=0.543589

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               67-1293, gnl|bosTau2|chr28 (1846301-1847534)
               

               
               67-1293, gnl|Hg17|chr1 (227807445-227806233)
               


               
               807-1049, gnl|bosTau2|chr10 (65892348-65892105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-1293, gnl|bosTau2|chr28 (1846301-1847534)
               

               
               67-1293, gnl|Hg17|chr1 (227807445-227806233)
               


               
               807-1049, gnl|bosTau2|chr10 (65892348-65892105)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               vin (0.665115)
               

               
               pro (0.512033)
               

               
               isp (0.451128)
               

               
               ssp (0.406559)
               

               
               ova (0.387397)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               eru (0.240096)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               pro (0.512033)
               

               
               isp (0.451128)
               

               
               ssp (0.406559)
               

               
               ova (0.387397)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               eru (0.240096)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	67-1293, gnl\|bosTau2\|chr28 (1846301-1847534)
	67-1293, gnl\|Hg17\|chr1 (227807445-227806233)

	807-1049, gnl\|bosTau2\|chr10 (65892348-65892105)

	vin (0.665115)
	pro (0.512033)
	isp (0.451128)
	ssp (0.406559)
	ova (0.387397)
	rec (0.346141)
	sme (0.305437)
	lin (0.291206)
	ste (0.270416)
	eru (0.240096)
	spc (0.226732)
	mas (0.210305)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	mcp (0.170648)
	cut (0.169924)
	fco (0.157208)
	tbr (0.154178)
	bfe (0.149858)
	csk (0.140746)
	hlv (0.139256)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)