Ss1.1-Utr1-UTR010025E01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTAGGGCAGGATGAACGCTGCTTTCCAAGATGGCGACGGAGGGAGGAGGGAAGGAGAT GAACGAGATTAAGACCCAATTCACCACCCGGGAAGGTCTGTACAAGCTGCTGCCGCACTC GGAGTACAGCCGGCCCAACCGGGTGCCCTTCAGCTCGCAGGGATCCAACCCTGTCCGCGT CTCCTTCGTAAACCTCAACGACCAGTCTGGCAACGGCGACCGCCTCTGCTTCAATGTGGG CCGGGAGCTCTACTTCTATATCTACAAGGGGGTCCGCAAGGCTGCTGACTTGAGTAAACC AATAGATAAAAGGATATACAAAGGAACACAGCCTACTTGTCATGACTTCAACCACCTCAC AGCCACAGCAGAAAGTGTCTCTCTCCTAGTGGGCTTTTCCGCAGGCCAAGTCCAGCTTAT AGACCCAATCAAAAAAGAAACTAGCAAACTATTTAATGAGGAAAGACTAATAGACAAGTC GCGAGTAACCTGTGTCAGATGGGTTCCTGGTTCGGAAAGCCTGTTCCTAGTAGCCCATTC GAGCGGGAACATGTACTTGTATAATGTGGAGCACGCTTGTGGCACCACAGCCCCCCACTA CCAGCTTCTGAAGCAGGGAGAGAGCTTTGCCGTGCACACTTGCAAGAGCAAATCCACGAG GAACCCTCTCCTTAAGTGGACGGTGGGCGAGGGGGCCCTCAACGAGTTTGCTTTCTCCCC AGATGGCAAGTTCTTGGCGTGCGTGAGCCAGGACGGCTTCCTGCGGGTGTTCAACTTTGA CTCGGTGGAGCTGCACGGCACCATGAAAAGCTACTTGGGAGGCTTGCTGTGCGTGTGCTG GAGCCCCGACGGCAAGTACATGGTGACGGGCGGCGAGGACGACCTGGTGACGGTCTGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTAGGGCAGGATGAACGCTGCTTTCCAAGATGGCGACGGAGGGAGGAGGGAAGGAGAT GAACGAGATTAAGACCCAATTCACCACCCGGGAAGGTCTGTACAAGCTGCTGCCGCACTC GGAGTACAGCCGGCCCAACCGGGTGCCCTTCAGCTCGCAGGGATCCAACCCTGTCCGCGT CTCCTTCGTAAACCTCAACGACCAGTCTGGCAACGGCGACCGCCTCTGCTTCAATGTGGG CCGGGAGCTCTACTTCTATATCTACAAGGGGGTCCGCAAGGCTGCTGACTTGAGTAAACC AATAGATAAAAGGATATACAAAGGAACACAGCCTACTTGTCATGACTTCAACCACCTCAC AGCCACAGCAGAAAGTGTCTCTCTCCTAGTGGGCTTTTCCGCAGGCCAAGTCCAGCTTAT AGACCCAATCAAAAAAGAAACTAGCAAACTATTTAATGAGGAAAGACTAATAGACAAGTC GCGAGTAACCTGTGTCAGATGGGTTCCTGGTTCGGAAAGCCTGTTCCTAGTAGCCCATTC GAGCGGGAACATGTACTTGTATAATGTGGAGCACGCTTGTGGCACCACAGCCCCCCACTA CCAGCTTCTGAAGCAGGGAGAGAGCTTTGCCGTGCACACTTGCAAGAGCAAATCCACGAG GAACCCTCTCCTTAAGTGGACGGTGGGCGAGGGGGCCCTCAACGAGTTTGCTTTCTCCCC AGATGGCAAGTTCTTGGCGTGCGTGAGCCAGGACGGCTTCCTGCGGGTGTTCAACTTTGA CTCGGTGGAGCTGCACGGCACCATGAAAAGCTACTTGGGAGGCTTGCTGTGCGTGTGCTG GAGCCCCGACGGCAAGTACATGGTGACGGGCGGCGAGGACGACCTGGTGACGGTCTGGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 373-463, - strand, RNAz p=0.870998 | |
| 586-705, + strand, RNAz p=0.933554 | |
| 626-740, + strand, RNAz p=0.729199 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 373-463, - strand, RNAz p=0.870998 | |
| 586-705, + strand, RNAz p=0.933554 | |
| 626-740, + strand, RNAz p=0.729199 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC019266, + |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 273-463, gnl|bosTau2|chr21 (46647837-46648027) | |
| 273-463, gnl|canFam2|chr8 (73229059-73229282) | |
| 273-463, gnl|danRer3|chr8 (31247639-31247828) | |
| 273-463, gnl|dasNov1|scaffold_154343 (3587-3364) | |
| 273-463, gnl|echTel1|scaffold_182640 (3164-2941) | |
| 273-463, gnl|fr1|chrUn (64467178-64467382) | |
| 273-463, gnl|galGal2|chr5 (46343490-46343711) | |
| 273-463, gnl|hg17|chr14 (101731014-101731237) | |
| 273-463, gnl|Hg17|chr14 (101731020-101731210) | |
| 273-463, gnl|loxAfr1|scaffold_86775 (1911-2110) | |
| 273-463, gnl|mm7|chr12 (108297544-108297765) | |
| 273-463, gnl|Mm7|chr12 (108297550-108297738) | |
| 273-463, gnl|monDom2|scaffold_6 (85595956-85596184) | |
| 273-463, gnl|oryCun1|scaffold_181206 (5184-5388) | |
| 273-463, gnl|panTro1|chr15 (102338111-102338334) | |
| 273-463, gnl|rheMac2|chr7 (165486472-165486695) | |
| 273-463, gnl|rn3|chr6 (135507950-135508171) | |
| 273-463, gnl|tetNig1|chr10 (7377515-7377719) | |
| 273-463, gnl|xenTro1|scaffold_178 (1767902-1768105) | |
| 277-462, gnl|bosTau2|chr18 (38177853-38178038) | |
| 277-462, gnl|canFam2|chr1 (112709398-112709197) | |
| 277-462, gnl|danRer3|chr8 (31247828-31247640) | |
| 277-462, gnl|dasNov1|scaffold_154343 (3377-3574) | |
| 277-462, gnl|echTel1|scaffold_92177 (1124-1337) | |
| 277-462, gnl|fr1|chrUn (89337335-89337149) | |
| 277-462, gnl|galGal2|chr5 (46343690-46343500) | |
| 277-462, gnl|hg17|chr19 (50985987-50986188) | |
| 277-462, gnl|Hg17|chr19 (50986189-50986004) | |
| 277-462, gnl|loxAfr1|scaffold_86775 (2128-1930) | |
| 277-462, gnl|mm7|chr7 (16760628-16760428) | |
| 277-462, gnl|Mm7|chr7 (16760425-16760610) | |
| 277-462, gnl|monDom2|scaffold_6 (85596159-85595969) | |
| 277-462, gnl|oryCun1|scaffold_176479 (3755-3576) | |
| 277-462, gnl|panTro1|chr20 (48285518-48285719) | |
| 277-462, gnl|rheMac2|chr19 (52279682-52279883) | |
| 277-462, gnl|rn3|chr1 (78512597-78512397) | |
| 277-462, gnl|tetNig1|chr16 (6698309-6698510) | |
| 277-462, gnl|xenTro1|scaffold_178 (1768102-1767915) | |
| 467-900, gnl|bosTau2|chr18 (38180059-38180492) | |
| 467-900, gnl|canFam2|chr1 (112712042-112711575) | |
| 467-900, gnl|danRer3|chr8 (31254057-31253595) | |
| 467-900, gnl|dasNov1|scaffold_59636 (8703-9177) | |
| 467-900, gnl|fr1|chrUn (89338199-89337743) | |
| 467-900, gnl|galGal2|chr5 (46348851-46348394) | |
| 467-900, gnl|hg17|chr19 (50981516-50981983) | |
| 467-900, gnl|Hg17|chr19 (50981966-50981533) | |
| 467-900, gnl|loxAfr1|scaffold_86775 (4905-4438) | |
| 467-900, gnl|mm7|chr7 (16762871-16762402) | |
| 467-900, gnl|Mm7|chr7 (16762419-16762852) | |
| 467-900, gnl|monDom2|scaffold_6 (85607535-85607078) | |
| 467-900, gnl|oryCun1|scaffold_176479 (4210-3756) | |
| 467-900, gnl|panTro1|chr20 (48281035-48281502) | |
| 467-900, gnl|rheMac2|chr19 (52275556-52276023) | |
| 467-900, gnl|rn3|chr1 (78514774-78514305) | |
| 467-900, gnl|tetNig1|chr16 (6697784-6698253) | |
| 467-900, gnl|xenTro1|scaffold_178 (1770422-1769958) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 273-463, gnl|bosTau2|chr21 (46647837-46648027) | |
| 273-463, gnl|canFam2|chr8 (73229059-73229282) | |
| 273-463, gnl|danRer3|chr8 (31247639-31247828) | |
| 273-463, gnl|dasNov1|scaffold_154343 (3587-3364) | |
| 273-463, gnl|echTel1|scaffold_182640 (3164-2941) | |
| 273-463, gnl|fr1|chrUn (64467178-64467382) | |
| 273-463, gnl|galGal2|chr5 (46343490-46343711) | |
| 273-463, gnl|hg17|chr14 (101731014-101731237) | |
| 273-463, gnl|Hg17|chr14 (101731020-101731210) | |
| 273-463, gnl|loxAfr1|scaffold_86775 (1911-2110) | |
| 273-463, gnl|mm7|chr12 (108297544-108297765) | |
| 273-463, gnl|Mm7|chr12 (108297550-108297738) | |
| 273-463, gnl|monDom2|scaffold_6 (85595956-85596184) | |
| 273-463, gnl|oryCun1|scaffold_181206 (5184-5388) | |
| 273-463, gnl|panTro1|chr15 (102338111-102338334) | |
| 273-463, gnl|rheMac2|chr7 (165486472-165486695) | |
| 273-463, gnl|rn3|chr6 (135507950-135508171) | |
| 273-463, gnl|tetNig1|chr10 (7377515-7377719) | |
| 273-463, gnl|xenTro1|scaffold_178 (1767902-1768105) | |
| 277-462, gnl|bosTau2|chr18 (38177853-38178038) | |
| 277-462, gnl|canFam2|chr1 (112709398-112709197) | |
| 277-462, gnl|danRer3|chr8 (31247828-31247640) | |
| 277-462, gnl|dasNov1|scaffold_154343 (3377-3574) | |
| 277-462, gnl|echTel1|scaffold_92177 (1124-1337) | |
| 277-462, gnl|fr1|chrUn (89337335-89337149) | |
| 277-462, gnl|galGal2|chr5 (46343690-46343500) | |
| 277-462, gnl|hg17|chr19 (50985987-50986188) | |
| 277-462, gnl|Hg17|chr19 (50986189-50986004) | |
| 277-462, gnl|loxAfr1|scaffold_86775 (2128-1930) | |
| 277-462, gnl|mm7|chr7 (16760628-16760428) | |
| 277-462, gnl|Mm7|chr7 (16760425-16760610) | |
| 277-462, gnl|monDom2|scaffold_6 (85596159-85595969) | |
| 277-462, gnl|oryCun1|scaffold_176479 (3755-3576) | |
| 277-462, gnl|panTro1|chr20 (48285518-48285719) | |
| 277-462, gnl|rheMac2|chr19 (52279682-52279883) | |
| 277-462, gnl|rn3|chr1 (78512597-78512397) | |
| 277-462, gnl|tetNig1|chr16 (6698309-6698510) | |
| 277-462, gnl|xenTro1|scaffold_178 (1768102-1767915) | |
| 467-900, gnl|bosTau2|chr18 (38180059-38180492) | |
| 467-900, gnl|canFam2|chr1 (112712042-112711575) | |
| 467-900, gnl|danRer3|chr8 (31254057-31253595) | |
| 467-900, gnl|dasNov1|scaffold_59636 (8703-9177) | |
| 467-900, gnl|fr1|chrUn (89338199-89337743) | |
| 467-900, gnl|galGal2|chr5 (46348851-46348394) | |
| 467-900, gnl|hg17|chr19 (50981516-50981983) | |
| 467-900, gnl|Hg17|chr19 (50981966-50981533) | |
| 467-900, gnl|loxAfr1|scaffold_86775 (4905-4438) | |
| 467-900, gnl|mm7|chr7 (16762871-16762402) | |
| 467-900, gnl|Mm7|chr7 (16762419-16762852) | |
| 467-900, gnl|monDom2|scaffold_6 (85607535-85607078) | |
| 467-900, gnl|oryCun1|scaffold_176479 (4210-3756) | |
| 467-900, gnl|panTro1|chr20 (48281035-48281502) | |
| 467-900, gnl|rheMac2|chr19 (52275556-52276023) | |
| 467-900, gnl|rn3|chr1 (78514774-78514305) | |
| 467-900, gnl|tetNig1|chr16 (6697784-6698253) | |
| 467-900, gnl|xenTro1|scaffold_178 (1770422-1769958) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |