Non-Coding RNA Search

Ss1.1-Utr1-UTR010026B02.5

Sequence:


               
               TGCAGCTCGGATCCAGTGTTGCCGCTGTGGTGTAGGCCAGCAGCTGCAGCCAGCCCCTAG
CCTGGGAACTTCCATATGGCGCAGGTTCATCCCTAAAAAAGAAAAAATAAAATAAAATAA
AAGGGAGAGAGAGAGAAATAAAGAAATGACAACAGAGTGCCTCCTCGCCTGCTCTGTCCT
TCAGATCTCTACTCAAACATCACTTCTCGACCCCAGTGGTACCACCAGCATAGAGTCTGA
GCTTTTCCAGAGGCCACAGTTTTTGTGATAATGCAGGTGTTTGTGTCATCACTGACATCG
TATCACTTCCCTCTTGACCCCTATGAGGGGAGGGGCTGGGTCTGTCTTGTGCACCAGCAA
ATCCTCAGCCCCCGGCGCCGTGCCTGGCACACAGTAAGTGCTCAGTAGAATGAAAGAGTT
CATGAAGGCACCATCCCAGGACAATTCGGTTCAGCAAACACTCACTGGTGCCTACCCTGT
GCTGGCTCCTGGGCAGGAGTGAGACCCTGGCCCTGCCCCTCGGAGACCTGGGCTTGCACT
CAGGCCGCAGGCAGGGCGGGAGTTGGAGGAATGGGAAGTCCCTGGTGCCAGGCTCTGGGA
GGGGGTTTTGAACGAGCAGGATGAGGGCAGCGCTGGGGGTGGCTGAGCGAAGACAAAGGC
TGCCCATCAGGGCAGGAGGGAGGTGGAGAGGTCTTTCAGATCGTGGAGAGGGCTTTCAGA
TCAAGGAGATGGAGGACCGGGCTGTGGCACGCAGACTCAATTCCAAAGACAATGATGAGG
AGTTCCCATTGTGGCTCAGCGGTAACAAGTCTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGCTCGGATCCAGTGTTGCCGCTGTGGTGTAGGCCAGCAGCTGCAGCCAGCCCCTAG
CCTGGGAACTTCCATATGGCGCAGGTTCATCCCTAAAAAAGAAAAAATAAAATAAAATAA
AAGGGAGAGAGAGAGAAATAAAGAAATGACAACAGAGTGCCTCCTCGCCTGCTCTGTCCT
TCAGATCTCTACTCAAACATCACTTCTCGACCCCAGTGGTACCACCAGCATAGAGTCTGA
GCTTTTCCAGAGGCCACAGTTTTTGTGATAATGCAGGTGTTTGTGTCATCACTGACATCG
TATCACTTCCCTCTTGACCCCTATGAGGGGAGGGGCTGGGTCTGTCTTGTGCACCAGCAA
ATCCTCAGCCCCCGGCGCCGTGCCTGGCACACAGTAAGTGCTCAGTAGAATGAAAGAGTT
CATGAAGGCACCATCCCAGGACAATTCGGTTCAGCAAACACTCACTGGTGCCTACCCTGT
GCTGGCTCCTGGGCAGGAGTGAGACCCTGGCCCTGCCCCTCGGAGACCTGGGCTTGCACT
CAGGCCGCAGGCAGGGCGGGAGTTGGAGGAATGGGAAGTCCCTGGTGCCAGGCTCTGGGA
GGGGGTTTTGAACGAGCAGGATGAGGGCAGCGCTGGGGGTGGCTGAGCGAAGACAAAGGC
TGCCCATCAGGGCAGGAGGGAGGTGGAGAGGTCTTTCAGATCGTGGAGAGGGCTTTCAGA
TCAAGGAGATGGAGGACCGGGCTGTGGCACGCAGACTCAATTCCAAAGACAATGATGAGG
AGTTCCCATTGTGGCTCAGCGGTAACAAGTCTGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               558-673, + strand, RNAz p=0.717482

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               558-673, + strand, RNAz p=0.717482

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               507-627, - strand, RNAmicro p=0.940266

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               507-627, - strand, RNAmicro p=0.940266

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               131-712, gnl|bosTau2|chr11 (78134382-78134959)
               

               
               131-712, gnl|Hg17|chr9 (128082187-128082811)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               131-712, gnl|bosTau2|chr11 (78134382-78134959)
               

               
               131-712, gnl|Hg17|chr9 (128082187-128082811)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	131-712, gnl\|bosTau2\|chr11 (78134382-78134959)
	131-712, gnl\|Hg17\|chr9 (128082187-128082811)