Non-Coding RNA Search

Ss1.1-Utr1-UTR010026C01.5

Sequence:


               
               ACTCAGCCCGTCGCCGCGCCGGCCTGAGGACGTGCGCACGTTTCCTTCGCGGCTCCCGGG
CACTGAGATGCGCGGCACCAGGGCCCGTGCCAGCTCCAGACATCTGTGGAGTTTAAGAAC
ACTATGGAGCTCATCAGAGTATATCACTGAAGAATATGATGGCTGAAAACAATTTTAAAA
TGCTAAAAATTCAACAGTGTGTAGTAGCCAACAAACTACCTAGAAACAGGCCTTATATTT
GCAATATTTGCTTCAAGCATTTTGAAACACCATCAAAATTAGCCAGGCATTATCTCATTC
ACACTGGCCAGAAGCCATTTGAATGTGATGTGTGTCATAAAACCTTTAGGCAACTAGTTC
ATCTGGAGAGACATCAACTAACTCATAATCTGCCTTTTAAATGTAGTATTTGTCAACACC
ACTTTAAGAATCTGAAGACATTTGTGAAGCACCAACAGCTTCACAATGAAACTTACCAGA
ATGATGTTAAACAGGTCAGAAGATTGTTGGATGCCAAGCAAGAAAAACCAGTATATGGAA
TGTATCATAGTTTTACCACAGAAGAGAGATGGGCATTGCACCCACACTCCAAGTCCGATC
CCACATACAGCCCTACAAAGAAAAAAAAGAATATTCACGCATGTACAATCTGTGGCAAGA
TGTTTCCGTCACAGTCAAAACTTGATAGGCATGCACTTATTCATACTGGTCAGAGGCCTT
TTAAATGTGTCCTGTGCAATAAATCTTTTCGACAGTCAACTCACTTAAAAATCCACCAAC
TCACACATTCAGAAGACAGACCTTTCCAATGTTGTTTTGGTCAAAAAGGATTTAAGATTC
AGAGTAAACTTCTGAAGCATAAACAAATCCATACCAGGAATAAAAGTTTTCCAACTCTGT
CATTAAACGTGAAGAGTGCAGAATCATGCCCCCTACCTAATAAATTAAATGCAAAGCAGG
ATGGTTCTGAAAATGGTGATATAGGTGAAACTGAGGAGAATAACCAACTCGATGTCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCAGCCCGTCGCCGCGCCGGCCTGAGGACGTGCGCACGTTTCCTTCGCGGCTCCCGGG
CACTGAGATGCGCGGCACCAGGGCCCGTGCCAGCTCCAGACATCTGTGGAGTTTAAGAAC
ACTATGGAGCTCATCAGAGTATATCACTGAAGAATATGATGGCTGAAAACAATTTTAAAA
TGCTAAAAATTCAACAGTGTGTAGTAGCCAACAAACTACCTAGAAACAGGCCTTATATTT
GCAATATTTGCTTCAAGCATTTTGAAACACCATCAAAATTAGCCAGGCATTATCTCATTC
ACACTGGCCAGAAGCCATTTGAATGTGATGTGTGTCATAAAACCTTTAGGCAACTAGTTC
ATCTGGAGAGACATCAACTAACTCATAATCTGCCTTTTAAATGTAGTATTTGTCAACACC
ACTTTAAGAATCTGAAGACATTTGTGAAGCACCAACAGCTTCACAATGAAACTTACCAGA
ATGATGTTAAACAGGTCAGAAGATTGTTGGATGCCAAGCAAGAAAAACCAGTATATGGAA
TGTATCATAGTTTTACCACAGAAGAGAGATGGGCATTGCACCCACACTCCAAGTCCGATC
CCACATACAGCCCTACAAAGAAAAAAAAGAATATTCACGCATGTACAATCTGTGGCAAGA
TGTTTCCGTCACAGTCAAAACTTGATAGGCATGCACTTATTCATACTGGTCAGAGGCCTT
TTAAATGTGTCCTGTGCAATAAATCTTTTCGACAGTCAACTCACTTAAAAATCCACCAAC
TCACACATTCAGAAGACAGACCTTTCCAATGTTGTTTTGGTCAAAAAGGATTTAAGATTC
AGAGTAAACTTCTGAAGCATAAACAAATCCATACCAGGAATAAAAGTTTTCCAACTCTGT
CATTAAACGTGAAGAGTGCAGAATCATGCCCCCTACCTAATAAATTAAATGCAAAGCAGG
ATGGTTCTGAAAATGGTGATATAGGTGAAACTGAGGAGAATAACCAACTCGATGTCCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843921|ref|XP_580864.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843921|ref|XP_580864.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-534, - strand, RNAz p=0.980583

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-534, - strand, RNAz p=0.980583

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-1020, gnl|bosTau2|chr10 (19277709-19276796)
               

               
               98-1020, gnl|Hg17|chr15 (33062985-33062066)
               

               
               98-1020, gnl|Mm7|chr2 (113938469-113937553)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-1020, gnl|bosTau2|chr10 (19277709-19276796)
               

               
               98-1020, gnl|Hg17|chr15 (33062985-33062066)
               

               
               98-1020, gnl|Mm7|chr2 (113938469-113937553)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               bla (0.124347)

	98-1020, gnl\|bosTau2\|chr10 (19277709-19276796)
	98-1020, gnl\|Hg17\|chr15 (33062985-33062066)
	98-1020, gnl\|Mm7\|chr2 (113938469-113937553)