Ss1.1-Utr1-UTR010026H01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGATCCTTCCGGTTCTGTGCCCCCATCCTTTCTCCGGGCCCCTCCTACCTGCAGCCCTCG GGGCTCAGCGGGACTAACTGCCAAGCGGAGAACCCGGCCGCCGAGCCCCGCCCCCAGGCG CCGGGCTGTTCCCGAGGGCACTGAACTGGGCTCTTGACGGGCATCATCTTTTAATCCTCA GATCATCCCAGGGAGCTCCACAGGGTCCCCTATCCTGGGCCATGAGTGAGCTGAAGGACT GCCCCTTGCAGTTCCATGACTTCAAGTCTGTGGACCACCTGAAAGTCTGTCCCCGCTACA CAGCAGTGTTGGCCCGCTCTGAGGATGATGGCATCGGTATTGAGGAGCTGGACACTCTGC AGCTGGAGCTTGAGACCTTGCTTTCCTCTGCCAGCCGACGCCTGCGGGTGCTCGAGGCTG AAACCCAGATCCTCACCGACTGGCAGGATAAGAAAGGTGACCGACGATTCCTGAAGCTGG GTCGAGACCATGAGCTTGGAGCTCCCCCCAAACATGGGAAACCCAAGAAGCAGAAACTGG AAGGGAAGGCAGGACATGGGCCGGGCCCTGGCCCTGGGCGACCCAAATCCAAAAACCTTC AGCCCAAGATCCAGGAATATGAATTCACTGATGACCCTATCGACGTGCCACGTATCCCCA AGAATGACGCCCCCAACAGATTCTGGGCTTCAGTGGAGCCCTACTGTGCTGACATCACCA GTGAGGAGGTGCGCACACTGGAGGAGCTACTGAAACCCCCAGAAGATGAGGCTGAACATT ACAAGATCCCGCCCCTGGGGAAGCACTACTCCCAACGCTGGGCACAGGAGGACCTGCTGG AGGAGCAGAAGGACGGGGCTCGGGCAGCAGCCATGGCTGACAAGAAGAAAGGCCTTATGG GGCCACTGACTGAACTAGACACTAAAGACGTGGATGCCCTGCTGAAGAAATCTGAGGCCC AGCATGAGCAGCCAGAAGATGGGTGCCCCTTTGGTGCCCTGACACAGCGCCTCCTGCAGG CCTTGGTGGAGGAAAATATTATTTCCCCTATGGAGGACTCTCCTATTCCTGACATGTCTG GGAAAGAATCGGGGGCTGATGGGGCAAGCACCTCTCCCCGAAATCAGAACAAGCCCTTCA GTGTGCCACATACAAAGTCCCTGGAGAGCCGCATCAAGGAGGAGCTGATTGCCCAGGGCC TACTGGAGTCTGAGGACCGCCCCGCGGAGGATTCAGAGGATGAGGTTCTTGCAGAGCTGC GCAAACGGCAGGCTGAGCTGAAGGCACTCAGTGCCCACAACCGCACCAAAAAACATGACC TGCTAAGGCTGGCAAAAGAGGAGGTGAGCCGGCAGGAACTGAGACAGCGAGTCCGCATGG CAGACAATGAGGTCATGGATGCCTTCCGTAAGATCATGGCTGCCAGGCAGAAGAAGCGGA CTCCCACCAAGAAGGAGAAGGATCAGGCCTGGAAGACTCTGAAGGAGCGTGAAAGCATCC TGAAGCTGCTAGATGGGTAGCCATCACCCCTGCCTCAGGCTGCCTCCCCATGGCCTGGGC AAGGGGACACCCACTTCCTTCTTTGGGCTGCCAGAAGCCTCAGCCTGTGGCTGCCTGTCT GATGTCAAATGGCAACAGTCTCTAGAGGCTGGGGCCCTTTTCTGAGATCTTTCGACTTAG CTCTGTCCAGCCAGGTCACAGGAACCCTCCTGGGCTAGCCTGGGGCCCAGTCTCTGCTTG GACCCCAAGATCTAGGGGCTTCATTTCTGGGCCTTCCTCATCCCCCTCTTCACCATCCTC CACTCCCCCACCTTTCTTACCCTCAAGGACTTCTCCCTTGTGGTTTTGTAAAAGTGCAAA CTTAAGAATAAAGTGACTGCTGTGGTTTTTTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGATCCTTCCGGTTCTGTGCCCCCATCCTTTCTCCGGGCCCCTCCTACCTGCAGCCCTCG GGGCTCAGCGGGACTAACTGCCAAGCGGAGAACCCGGCCGCCGAGCCCCGCCCCCAGGCG CCGGGCTGTTCCCGAGGGCACTGAACTGGGCTCTTGACGGGCATCATCTTTTAATCCTCA GATCATCCCAGGGAGCTCCACAGGGTCCCCTATCCTGGGCCATGAGTGAGCTGAAGGACT GCCCCTTGCAGTTCCATGACTTCAAGTCTGTGGACCACCTGAAAGTCTGTCCCCGCTACA CAGCAGTGTTGGCCCGCTCTGAGGATGATGGCATCGGTATTGAGGAGCTGGACACTCTGC AGCTGGAGCTTGAGACCTTGCTTTCCTCTGCCAGCCGACGCCTGCGGGTGCTCGAGGCTG AAACCCAGATCCTCACCGACTGGCAGGATAAGAAAGGTGACCGACGATTCCTGAAGCTGG GTCGAGACCATGAGCTTGGAGCTCCCCCCAAACATGGGAAACCCAAGAAGCAGAAACTGG AAGGGAAGGCAGGACATGGGCCGGGCCCTGGCCCTGGGCGACCCAAATCCAAAAACCTTC AGCCCAAGATCCAGGAATATGAATTCACTGATGACCCTATCGACGTGCCACGTATCCCCA AGAATGACGCCCCCAACAGATTCTGGGCTTCAGTGGAGCCCTACTGTGCTGACATCACCA GTGAGGAGGTGCGCACACTGGAGGAGCTACTGAAACCCCCAGAAGATGAGGCTGAACATT ACAAGATCCCGCCCCTGGGGAAGCACTACTCCCAACGCTGGGCACAGGAGGACCTGCTGG AGGAGCAGAAGGACGGGGCTCGGGCAGCAGCCATGGCTGACAAGAAGAAAGGCCTTATGG GGCCACTGACTGAACTAGACACTAAAGACGTGGATGCCCTGCTGAAGAAATCTGAGGCCC AGCATGAGCAGCCAGAAGATGGGTGCCCCTTTGGTGCCCTGACACAGCGCCTCCTGCAGG CCTTGGTGGAGGAAAATATTATTTCCCCTATGGAGGACTCTCCTATTCCTGACATGTCTG GGAAAGAATCGGGGGCTGATGGGGCAAGCACCTCTCCCCGAAATCAGAACAAGCCCTTCA GTGTGCCACATACAAAGTCCCTGGAGAGCCGCATCAAGGAGGAGCTGATTGCCCAGGGCC TACTGGAGTCTGAGGACCGCCCCGCGGAGGATTCAGAGGATGAGGTTCTTGCAGAGCTGC GCAAACGGCAGGCTGAGCTGAAGGCACTCAGTGCCCACAACCGCACCAAAAAACATGACC TGCTAAGGCTGGCAAAAGAGGAGGTGAGCCGGCAGGAACTGAGACAGCGAGTCCGCATGG CAGACAATGAGGTCATGGATGCCTTCCGTAAGATCATGGCTGCCAGGCAGAAGAAGCGGA CTCCCACCAAGAAGGAGAAGGATCAGGCCTGGAAGACTCTGAAGGAGCGTGAAAGCATCC TGAAGCTGCTAGATGGGTAGCCATCACCCCTGCCTCAGGCTGCCTCCCCATGGCCTGGGC AAGGGGACACCCACTTCCTTCTTTGGGCTGCCAGAAGCCTCAGCCTGTGGCTGCCTGTCT GATGTCAAATGGCAACAGTCTCTAGAGGCTGGGGCCCTTTTCTGAGATCTTTCGACTTAG CTCTGTCCAGCCAGGTCACAGGAACCCTCCTGGGCTAGCCTGGGGCCCAGTCTCTGCTTG GACCCCAAGATCTAGGGGCTTCATTTCTGGGCCTTCCTCATCCCCCTCTTCACCATCCTC CACTCCCCCACCTTTCTTACCCTCAAGGACTTCTCCCTTGTGGTTTTGTAAAAGTGCAAA CTTAAGAATAAAGTGACTGCTGTGGTTTTTTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 3-1863, - strand, RNAz p=0.997048 | |
| 27-141, - strand, RNAz p=0.996536 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-1863, - strand, RNAz p=0.997048 | |
| 27-141, - strand, RNAz p=0.996536 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr22 (11939735-11939596) | |
| 1-141, gnl|Hg17|chr3 (9809436-9809298) | |
| 1-141, gnl|Mm7|chr6 (113538766-113538635) | |
| 3-131, gnl|bosTau2|chr18 (23839597-23839468) | |
| 419-688, gnl|bosTau2|chr22 (11936949-11936680) | |
| 419-688, gnl|Hg17|chr3 (9806659-9806388) | |
| 419-688, gnl|Mm7|chr6 (113536199-113535928) | |
| 784-927, gnl|bosTau2|chr22 (11935074-11934931) | |
| 784-927, gnl|canFam2|chr20 (11460753-11460592) | |
| 784-927, gnl|danRer3|chr14 (5709858-5709708) | |
| 784-927, gnl|dasNov1|scaffold_18799 (18579-18741) | |
| 784-927, gnl|fr1|chrUn (57755778-57756010) | |
| 784-927, gnl|galGal2|chr12 (11491366-11491528) | |
| 784-927, gnl|hg17|chr3 (9803880-9804042) | |
| 784-927, gnl|Hg17|chr3 (9804026-9803883) | |
| 784-927, gnl|loxAfr1|scaffold_221718 (862-1011) | |
| 784-927, gnl|mm7|chr6 (113533390-113533552) | |
| 784-927, gnl|Mm7|chr6 (113533536-113533393) | |
| 784-927, gnl|monDom2|scaffold_5 (36586317-36586483) | |
| 784-927, gnl|panTro1|chr2 (10183475-10183637) | |
| 784-927, gnl|rheMac2|chr2 (51208284-51208122) | |
| 784-927, gnl|rn3|chr4 (149498873-149499035) | |
| 784-927, gnl|tetNig1|chr11 (1806256-1806110) | |
| 784-927, gnl|xenTro1|scaffold_1005 (331383-331530) | |
| 1030-1151, gnl|bosTau2|chr22 (11933209-11933087) | |
| 1030-1151, gnl|Hg17|chr3 (9802111-9801989) | |
| 1030-1151, gnl|Mm7|chr6 (113531978-113531856) | |
| 1326-1896, gnl|bosTau2|chr22 (11930039-11929489) | |
| 1326-1896, gnl|Hg17|chr3 (9797235-9796652) | |
| 1326-1896, gnl|Mm7|chr6 (113528110-113527572) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr22 (11939735-11939596) | |
| 1-141, gnl|Hg17|chr3 (9809436-9809298) | |
| 1-141, gnl|Mm7|chr6 (113538766-113538635) | |
| 3-131, gnl|bosTau2|chr18 (23839597-23839468) | |
| 419-688, gnl|bosTau2|chr22 (11936949-11936680) | |
| 419-688, gnl|Hg17|chr3 (9806659-9806388) | |
| 419-688, gnl|Mm7|chr6 (113536199-113535928) | |
| 784-927, gnl|bosTau2|chr22 (11935074-11934931) | |
| 784-927, gnl|canFam2|chr20 (11460753-11460592) | |
| 784-927, gnl|danRer3|chr14 (5709858-5709708) | |
| 784-927, gnl|dasNov1|scaffold_18799 (18579-18741) | |
| 784-927, gnl|fr1|chrUn (57755778-57756010) | |
| 784-927, gnl|galGal2|chr12 (11491366-11491528) | |
| 784-927, gnl|hg17|chr3 (9803880-9804042) | |
| 784-927, gnl|Hg17|chr3 (9804026-9803883) | |
| 784-927, gnl|loxAfr1|scaffold_221718 (862-1011) | |
| 784-927, gnl|mm7|chr6 (113533390-113533552) | |
| 784-927, gnl|Mm7|chr6 (113533536-113533393) | |
| 784-927, gnl|monDom2|scaffold_5 (36586317-36586483) | |
| 784-927, gnl|panTro1|chr2 (10183475-10183637) | |
| 784-927, gnl|rheMac2|chr2 (51208284-51208122) | |
| 784-927, gnl|rn3|chr4 (149498873-149499035) | |
| 784-927, gnl|tetNig1|chr11 (1806256-1806110) | |
| 784-927, gnl|xenTro1|scaffold_1005 (331383-331530) | |
| 1030-1151, gnl|bosTau2|chr22 (11933209-11933087) | |
| 1030-1151, gnl|Hg17|chr3 (9802111-9801989) | |
| 1030-1151, gnl|Mm7|chr6 (113531978-113531856) | |
| 1326-1896, gnl|bosTau2|chr22 (11930039-11929489) | |
| 1326-1896, gnl|Hg17|chr3 (9797235-9796652) | |
| 1326-1896, gnl|Mm7|chr6 (113528110-113527572) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cga (0.279096) | |
| ecc (0.23007) | |
| nbm (0.198649) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cga (0.279096) | |
| ecc (0.23007) | |
| nbm (0.198649) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| med (0.116252) |