Ss1.1-Utr1-UTR010029B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGCTGGGTGTGGAGTCCGCAGGACTGGTCGGGAGGCCGTGTCGGGAGTGAGAGGGTCT GATCGGGCTCGAGCAGCGCTGAAGGGCCCGTCCTGGGTCTAGGGGAGAGAATCTCTTCTG TGAGACCCGCCTTCCCCGGCCCCGGCCCCTCCCAGTTCCCCCAGCGACGGCCGCTTCCTG CTCTTGGTCGCAACCATGGCTGAAGAACAACCTCAGGTCGAATTGTTCGTAAAGGCTGGC AGTGATGGGGCCAAGATCGGAAACTGCCCCTTCTCCCAGAGACTGTTCATGGTGCTCTGG CTCAAGGGAGTTACCTTCAATGTCACCACTGTGGACACCAAGAGGCGGACTGAGACGGTG CAGAAACTGTGCCCAGGGGGACAGCTCCCTTTCCTGCTGTACGGCACTGAAGTGCACACA GATACCAACAAGATCGAGGAATTTCTGGAGGCAGTGCTATGCCCTCCCAGGTACCCCAAG CTGGCAGCTCTGAACCCTGAATCCAACACAGCTGGGCTGGACATATTTGCTAAATTTTCT GCCTACATTAAGAATTCAAACCCAGCTCTCAATGACAACCTGGAGAAGGGGCTCCTGAAA GCCCTGAAAGTCTTAGACAATTACTTGACATCCCCTCTCCCAGAAGAAGTGGATGAGACC AGTGCTGAGGATGAGGGCATCTCTCAGAGGAAGTTTCTGGATGGCAATGAGCTCACTTTG GCTGACTGCAACCTGTTGCCAAAGCTCCACATAGTACAGGTGGTCTGTAAGAAGTACCGG GGATTCTCCATTCCGGATGCGTTTCGTGGAGTGCATCGATACCTGCGCAATGCCTATGCT CGGGAAGAGTTTGCCTCCACCTGTCCAGACGATGAGGAGATCGAGCTGGCCTACGAGCAA GTGGCCAAGGCCCTCAAATAAGCCTCTCCTGGGGCTCCTTCTCCCCCCTCCTCCATTTCC TTCACAAAGGCCCTGGGTGTTTTCCACGTGGCTACGCAATGGAAATGGACACACTCCAAA ATGGGGCAGTGGGCACAGAATCCAGGAGCATTTGTGCAGGGCTTGCTGGGGGTGGGGGGT GGGGGTGAGGAGAAAGGATGGGAGATCTGGGTGAGATTTTTATTGTGGGGTGGGGTGGGT AGGACGACGTTGTTTCAGTAATAAAATACAGAATGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGCTGGGTGTGGAGTCCGCAGGACTGGTCGGGAGGCCGTGTCGGGAGTGAGAGGGTCT GATCGGGCTCGAGCAGCGCTGAAGGGCCCGTCCTGGGTCTAGGGGAGAGAATCTCTTCTG TGAGACCCGCCTTCCCCGGCCCCGGCCCCTCCCAGTTCCCCCAGCGACGGCCGCTTCCTG CTCTTGGTCGCAACCATGGCTGAAGAACAACCTCAGGTCGAATTGTTCGTAAAGGCTGGC AGTGATGGGGCCAAGATCGGAAACTGCCCCTTCTCCCAGAGACTGTTCATGGTGCTCTGG CTCAAGGGAGTTACCTTCAATGTCACCACTGTGGACACCAAGAGGCGGACTGAGACGGTG CAGAAACTGTGCCCAGGGGGACAGCTCCCTTTCCTGCTGTACGGCACTGAAGTGCACACA GATACCAACAAGATCGAGGAATTTCTGGAGGCAGTGCTATGCCCTCCCAGGTACCCCAAG CTGGCAGCTCTGAACCCTGAATCCAACACAGCTGGGCTGGACATATTTGCTAAATTTTCT GCCTACATTAAGAATTCAAACCCAGCTCTCAATGACAACCTGGAGAAGGGGCTCCTGAAA GCCCTGAAAGTCTTAGACAATTACTTGACATCCCCTCTCCCAGAAGAAGTGGATGAGACC AGTGCTGAGGATGAGGGCATCTCTCAGAGGAAGTTTCTGGATGGCAATGAGCTCACTTTG GCTGACTGCAACCTGTTGCCAAAGCTCCACATAGTACAGGTGGTCTGTAAGAAGTACCGG GGATTCTCCATTCCGGATGCGTTTCGTGGAGTGCATCGATACCTGCGCAATGCCTATGCT CGGGAAGAGTTTGCCTCCACCTGTCCAGACGATGAGGAGATCGAGCTGGCCTACGAGCAA GTGGCCAAGGCCCTCAAATAAGCCTCTCCTGGGGCTCCTTCTCCCCCCTCCTCCATTTCC TTCACAAAGGCCCTGGGTGTTTTCCACGTGGCTACGCAATGGAAATGGACACACTCCAAA ATGGGGCAGTGGGCACAGAATCCAGGAGCATTTGTGCAGGGCTTGCTGGGGGTGGGGGGT GGGGGTGAGGAGAAAGGATGGGAGATCTGGGTGAGATTTTTATTGTGGGGTGGGGTGGGT AGGACGACGTTGTTTCAGTAATAAAATACAGAATGAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 356-473, - strand, RNAz p=0.94924 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 356-473, - strand, RNAz p=0.94924 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 3-235, gnl|bosTau2|chr23 (23384365-23384136) | |
| 3-235, gnl|canFam2|chr12 (4218285-4218460) | |
| 3-235, gnl|fr1|chrUn (68514478-68514673) | |
| 3-235, gnl|hg17|chr6 (31812009-31812185) | |
| 3-235, gnl|Hg17|chr6 (31812251-31812017) | |
| 3-235, gnl|mm7|chr17 (33147587-33147411) | |
| 3-235, gnl|Mm7|chr17 (33147341-33147577) | |
| 3-235, gnl|monDom2|scaffold_42 (17658884-17658686) | |
| 3-235, gnl|oryCun1|scaffold_198577 (101832-102009) | |
| 3-235, gnl|panTro1|chr5 (32214707-32214883) | |
| 3-235, gnl|rheMac2|chr4 (31383154-31383330) | |
| 3-235, gnl|rn3|chr20 (3842448-3842624) | |
| 343-473, gnl|bosTau2|chr23 (23381421-23381291) | |
| 343-473, gnl|canFam2|chr12 (49835434-49835541) | |
| 343-473, gnl|danRer3|chrNA (8593383-8593486) | |
| 343-473, gnl|dasNov1|scaffold_16633 (40314-40209) | |
| 343-473, gnl|echTel1|scaffold_285496 (24854-24961) | |
| 343-473, gnl|fr1|chrUn (68506299-68506388) | |
| 343-473, gnl|hg17|chr16 (85026406-85026516) | |
| 343-473, gnl|Hg17|chr6 (31809719-31809589) | |
| 343-473, gnl|mm7|chr17 (33149989-33149879) | |
| 343-473, gnl|Mm7|chr17 (33149869-33149999) | |
| 343-473, gnl|monDom2|scaffold_42 (17662101-17661991) | |
| 343-473, gnl|oryCun1|scaffold_200644 (58584-58695) | |
| 343-473, gnl|panTro1|chr18 (79959869-79959979) | |
| 343-473, gnl|rheMac2|chr20 (84569323-84569433) | |
| 343-473, gnl|rn3|chr20 (3840252-3840362) | |
| 343-473, gnl|tetNig1|chr21_random (3102086-3102189) | |
| 758-1179, gnl|bosTau2|chr23 (23379149-23378754) | |
| 758-1179, gnl|Hg17|chr6 (31806761-31806355) | |
| 758-1179, gnl|Mm7|chr17 (33155418-33155817) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-235, gnl|bosTau2|chr23 (23384365-23384136) | |
| 3-235, gnl|canFam2|chr12 (4218285-4218460) | |
| 3-235, gnl|fr1|chrUn (68514478-68514673) | |
| 3-235, gnl|hg17|chr6 (31812009-31812185) | |
| 3-235, gnl|Hg17|chr6 (31812251-31812017) | |
| 3-235, gnl|mm7|chr17 (33147587-33147411) | |
| 3-235, gnl|Mm7|chr17 (33147341-33147577) | |
| 3-235, gnl|monDom2|scaffold_42 (17658884-17658686) | |
| 3-235, gnl|oryCun1|scaffold_198577 (101832-102009) | |
| 3-235, gnl|panTro1|chr5 (32214707-32214883) | |
| 3-235, gnl|rheMac2|chr4 (31383154-31383330) | |
| 3-235, gnl|rn3|chr20 (3842448-3842624) | |
| 343-473, gnl|bosTau2|chr23 (23381421-23381291) | |
| 343-473, gnl|canFam2|chr12 (49835434-49835541) | |
| 343-473, gnl|danRer3|chrNA (8593383-8593486) | |
| 343-473, gnl|dasNov1|scaffold_16633 (40314-40209) | |
| 343-473, gnl|echTel1|scaffold_285496 (24854-24961) | |
| 343-473, gnl|fr1|chrUn (68506299-68506388) | |
| 343-473, gnl|hg17|chr16 (85026406-85026516) | |
| 343-473, gnl|Hg17|chr6 (31809719-31809589) | |
| 343-473, gnl|mm7|chr17 (33149989-33149879) | |
| 343-473, gnl|Mm7|chr17 (33149869-33149999) | |
| 343-473, gnl|monDom2|scaffold_42 (17662101-17661991) | |
| 343-473, gnl|oryCun1|scaffold_200644 (58584-58695) | |
| 343-473, gnl|panTro1|chr18 (79959869-79959979) | |
| 343-473, gnl|rheMac2|chr20 (84569323-84569433) | |
| 343-473, gnl|rn3|chr20 (3840252-3840362) | |
| 343-473, gnl|tetNig1|chr21_random (3102086-3102189) | |
| 758-1179, gnl|bosTau2|chr23 (23379149-23378754) | |
| 758-1179, gnl|Hg17|chr6 (31806761-31806355) | |
| 758-1179, gnl|Mm7|chr17 (33155418-33155817) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| nco (0.970403) | |
| nje (0.8296) | |
| nlu (0.766724) | |
| eep (0.735384) | |
| pgl (0.7109) | |
| cst (0.560146) | |
| nep (0.551775) | |
| fty (0.527519) | |
| eye (0.511509) | |
| cje (0.495704) | |
| med (0.465008) | |
| pty (0.428143) | |
| nca (0.410621) | |
| ute (0.398353) | |
| col (0.390016) | |
| ill (0.351185) | |
| ton (0.351) | |
| eje (0.296501) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| cov (0.264306) | |
| cly (0.241284) | |
| eru (0.240096) | |
| cty (0.20816) | |
| aor (0.195274) | |
| duo (0.172801) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| clu (0.119646) | |
| nbm (0.0993246) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.970403) | |
| nje (0.8296) | |
| nlu (0.766724) | |
| eep (0.735384) | |
| pgl (0.7109) | |
| cst (0.560146) | |
| nep (0.551775) | |
| fty (0.527519) | |
| eye (0.511509) | |
| cje (0.495704) | |
| med (0.465008) | |
| pty (0.428143) | |
| nca (0.410621) | |
| ute (0.398353) | |
| col (0.390016) | |
| ill (0.351185) | |
| ton (0.351) | |
| eje (0.296501) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| cov (0.264306) | |
| cly (0.241284) | |
| eru (0.240096) | |
| cty (0.20816) | |
| aor (0.195274) | |
| duo (0.172801) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| clu (0.119646) | |
| nbm (0.0993246) |