Ss1.1-Utr1-UTR010029C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCTGGCCTTCGGCCCCGGCCGGAGGAGGCGGCGGGCGGGCAGGGGCTGCGAAATGTCG CACGGAGCTGGGCTCGTTCGCACCACGTGCAGCAGCGGCAGCTCCTCGGGACCCGGTGCT GGCGCGGGGCAGCCGGGCGCGGGCTCGTCGGAAGGGCTGCTGGACCCCTTCTACCCCCGC ACCCACGCGGCGCTGCTGAAAGTGGCGCAGATGATCACACTGCTGATTGCCTTCATCTGT GTGAGGAGCTCTCTGAAGATCACCTACAGTGCCTACAGCTACTTTGAAGTGGTCACCATT TGCAACTTGATCATGATCCTGGCCTTTTACCTGGTCCACCTCTTCCGTCTCTACCGTGTG CTCACCTGTATCAGCTGGCCCCTATCGGAGCTCCTGCACTATTTAATCGGTACCCTGCTC CTCCTAATCGCATCCATCGTGGCGGCCTCCAAGAGTTACGGCCAGAGTGGACTGGTGGCT GGAGCGATCTTCGGTTTCCTGGCCACCTTCCTCTGCCTGGCGAGCGTGTGGTTGTCTTAC AAAATCTCGTGTGTGACCCAGTCAACAGATGCAGACGTCTGATGACGCTCCAGCACCACA CTGCTCCCCCTGGCTCTGCAGGAGGCCCTGCAGGACCGATGGCCCAGCCCACGGGAGGGT CACGGGCGGCGGCCCCAGGAGAGACCAGGGTCTGTGTCCCTGTGCCAGATCCCCTGCCGG TGGACAAGGGAGGGGCTTTTCCTCTGGCTCCTAAGCTGCTCCAGCCTCTCTCTCCAGCTT TCCTCATTTCTTCCCTGTCTGGAAAAGAAAAGCAGCCTCCAGGGAAATCTGGTCTCTCCC TCCTGCTTTAGAACTGCCTCAGGGACTTGATGACCCCGCTCAAGGTGAAGGAGGGGTTTC TGAATTCTCCCGCGGAAACCTGCCTTTCTCCCCAGCCTTTAGGGGTAGGGACGCTGCCTT AAGTCCTCTTATAAAAACACAGCCACCTCTTAATTTATCTAGCTTGGAAATCTGGTTTTG AAGGTACCCTCTTTCTTAAAGGGAGGCCTGTGGAAGCTCCGTGGGGTCAGACTGGCCCCA AACAGGAGATCTCACTGCTCCTTTCCTGTTCTTACCATTGTGAACATGTTTTTTATGTGT TTTTTAATAAAATGTTGACTTGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCTGGCCTTCGGCCCCGGCCGGAGGAGGCGGCGGGCGGGCAGGGGCTGCGAAATGTCG CACGGAGCTGGGCTCGTTCGCACCACGTGCAGCAGCGGCAGCTCCTCGGGACCCGGTGCT GGCGCGGGGCAGCCGGGCGCGGGCTCGTCGGAAGGGCTGCTGGACCCCTTCTACCCCCGC ACCCACGCGGCGCTGCTGAAAGTGGCGCAGATGATCACACTGCTGATTGCCTTCATCTGT GTGAGGAGCTCTCTGAAGATCACCTACAGTGCCTACAGCTACTTTGAAGTGGTCACCATT TGCAACTTGATCATGATCCTGGCCTTTTACCTGGTCCACCTCTTCCGTCTCTACCGTGTG CTCACCTGTATCAGCTGGCCCCTATCGGAGCTCCTGCACTATTTAATCGGTACCCTGCTC CTCCTAATCGCATCCATCGTGGCGGCCTCCAAGAGTTACGGCCAGAGTGGACTGGTGGCT GGAGCGATCTTCGGTTTCCTGGCCACCTTCCTCTGCCTGGCGAGCGTGTGGTTGTCTTAC AAAATCTCGTGTGTGACCCAGTCAACAGATGCAGACGTCTGATGACGCTCCAGCACCACA CTGCTCCCCCTGGCTCTGCAGGAGGCCCTGCAGGACCGATGGCCCAGCCCACGGGAGGGT CACGGGCGGCGGCCCCAGGAGAGACCAGGGTCTGTGTCCCTGTGCCAGATCCCCTGCCGG TGGACAAGGGAGGGGCTTTTCCTCTGGCTCCTAAGCTGCTCCAGCCTCTCTCTCCAGCTT TCCTCATTTCTTCCCTGTCTGGAAAAGAAAAGCAGCCTCCAGGGAAATCTGGTCTCTCCC TCCTGCTTTAGAACTGCCTCAGGGACTTGATGACCCCGCTCAAGGTGAAGGAGGGGTTTC TGAATTCTCCCGCGGAAACCTGCCTTTCTCCCCAGCCTTTAGGGGTAGGGACGCTGCCTT AAGTCCTCTTATAAAAACACAGCCACCTCTTAATTTATCTAGCTTGGAAATCTGGTTTTG AAGGTACCCTCTTTCTTAAAGGGAGGCCTGTGGAAGCTCCGTGGGGTCAGACTGGCCCCA AACAGGAGATCTCACTGCTCCTTTCCTGTTCTTACCATTGTGAACATGTTTTTTATGTGT TTTTTAATAAAATGTTGACTTGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 745-849, - strand, RNAz p=0.997267 | |
| 890-988, + strand, RNAz p=0.937183 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 745-849, - strand, RNAz p=0.997267 | |
| 890-988, + strand, RNAz p=0.937183 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_181472, + |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 4-213, gnl|bosTau2|chr22 (10817541-10817751) | |
| 4-213, gnl|Hg17|chr3 (32408351-32408561) | |
| 4-213, gnl|Mm7|chr9 (114432936-114432764) | |
| 216-388, gnl|bosTau2|chr22 (11090923-11090751) | |
| 216-388, gnl|canFam2|chr23 (15382526-15382350) | |
| 216-388, gnl|canFam2|chr23 (15382527-15382356) | |
| 216-388, gnl|danRer3|chr16 (38520480-38520298) | |
| 216-388, gnl|echTel1|scaffold_270744 (896-711) | |
| 216-388, gnl|echTel1|scaffold_270744 (897-715) | |
| 216-388, gnl|hg17|chr3 (32458336-32458515) | |
| 216-388, gnl|Hg17|chr3 (32458338-32458510) | |
| 216-388, gnl|hg17|chr7 (120653078-120653261) | |
| 216-388, gnl|loxAfr1|scaffold_31464 (13992-14171) | |
| 216-388, gnl|loxAfr1|scaffold_31464 (13991-14167) | |
| 216-388, gnl|mm7|chr9 (114414490-114414311) | |
| 216-388, gnl|mm7|chr9 (114414491-114414315) | |
| 216-388, gnl|Mm7|chr9 (114414486-114414314) | |
| 216-388, gnl|monDom2|scaffold_7 (87965643-87965822) | |
| 216-388, gnl|oryCun1|scaffold_202971 (6382-6203) | |
| 216-388, gnl|oryCun1|scaffold_202971 (6382-6217) | |
| 216-388, gnl|panTro1|chr2 (33453725-33453904) | |
| 216-388, gnl|panTro1|chr6 (122995573-122995756) | |
| 216-388, gnl|rheMac2|chr2 (174916159-174916338) | |
| 216-388, gnl|rheMac2|chr3 (158940575-158940759) | |
| 216-388, gnl|rn3|chr8 (119202563-119202384) | |
| 216-388, gnl|rn3|chr8 (119202564-119202388) | |
| 607-883, gnl|bosTau2|chr22 (11081612-11081322) | |
| 607-883, gnl|canFam2|chr23 (15369564-15368915) | |
| 607-883, gnl|dasNov1|scaffold_149825 (945-1455) | |
| 607-883, gnl|echTel1|scaffold_314100 (92475-91893) | |
| 607-883, gnl|hg17|chr3 (32470742-32471347) | |
| 607-883, gnl|Hg17|chr3 (32470756-32471049) | |
| 607-883, gnl|mm7|chr9 (114408384-114407930) | |
| 607-883, gnl|oryCun1|scaffold_202971 (6119-5479) | |
| 607-883, gnl|panTro1|chr2 (33466448-33467056) | |
| 607-883, gnl|rheMac2|chr2 (174928214-174928801) | |
| 607-883, gnl|rn3|chr8 (119195413-119194905) | |
| 890-1106, gnl|bosTau2|chr22 (11081277-11081062) | |
| 890-1106, gnl|canFam2|chr23 (15369564-15368915) | |
| 890-1106, gnl|dasNov1|scaffold_149825 (945-1455) | |
| 890-1106, gnl|echTel1|scaffold_314100 (92475-91893) | |
| 890-1106, gnl|hg17|chr3 (32470742-32471347) | |
| 890-1106, gnl|Hg17|chr3 (32471067-32471286) | |
| 890-1106, gnl|mm7|chr9 (114408384-114407930) | |
| 890-1106, gnl|oryCun1|scaffold_202971 (6119-5479) | |
| 890-1106, gnl|panTro1|chr2 (33466448-33467056) | |
| 890-1106, gnl|rheMac2|chr2 (174928214-174928801) | |
| 890-1106, gnl|rn3|chr8 (119195413-119194905) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-213, gnl|bosTau2|chr22 (10817541-10817751) | |
| 4-213, gnl|Hg17|chr3 (32408351-32408561) | |
| 4-213, gnl|Mm7|chr9 (114432936-114432764) | |
| 216-388, gnl|bosTau2|chr22 (11090923-11090751) | |
| 216-388, gnl|canFam2|chr23 (15382526-15382350) | |
| 216-388, gnl|canFam2|chr23 (15382527-15382356) | |
| 216-388, gnl|danRer3|chr16 (38520480-38520298) | |
| 216-388, gnl|echTel1|scaffold_270744 (896-711) | |
| 216-388, gnl|echTel1|scaffold_270744 (897-715) | |
| 216-388, gnl|hg17|chr3 (32458336-32458515) | |
| 216-388, gnl|Hg17|chr3 (32458338-32458510) | |
| 216-388, gnl|hg17|chr7 (120653078-120653261) | |
| 216-388, gnl|loxAfr1|scaffold_31464 (13992-14171) | |
| 216-388, gnl|loxAfr1|scaffold_31464 (13991-14167) | |
| 216-388, gnl|mm7|chr9 (114414490-114414311) | |
| 216-388, gnl|mm7|chr9 (114414491-114414315) | |
| 216-388, gnl|Mm7|chr9 (114414486-114414314) | |
| 216-388, gnl|monDom2|scaffold_7 (87965643-87965822) | |
| 216-388, gnl|oryCun1|scaffold_202971 (6382-6203) | |
| 216-388, gnl|oryCun1|scaffold_202971 (6382-6217) | |
| 216-388, gnl|panTro1|chr2 (33453725-33453904) | |
| 216-388, gnl|panTro1|chr6 (122995573-122995756) | |
| 216-388, gnl|rheMac2|chr2 (174916159-174916338) | |
| 216-388, gnl|rheMac2|chr3 (158940575-158940759) | |
| 216-388, gnl|rn3|chr8 (119202563-119202384) | |
| 216-388, gnl|rn3|chr8 (119202564-119202388) | |
| 607-883, gnl|bosTau2|chr22 (11081612-11081322) | |
| 607-883, gnl|canFam2|chr23 (15369564-15368915) | |
| 607-883, gnl|dasNov1|scaffold_149825 (945-1455) | |
| 607-883, gnl|echTel1|scaffold_314100 (92475-91893) | |
| 607-883, gnl|hg17|chr3 (32470742-32471347) | |
| 607-883, gnl|Hg17|chr3 (32470756-32471049) | |
| 607-883, gnl|mm7|chr9 (114408384-114407930) | |
| 607-883, gnl|oryCun1|scaffold_202971 (6119-5479) | |
| 607-883, gnl|panTro1|chr2 (33466448-33467056) | |
| 607-883, gnl|rheMac2|chr2 (174928214-174928801) | |
| 607-883, gnl|rn3|chr8 (119195413-119194905) | |
| 890-1106, gnl|bosTau2|chr22 (11081277-11081062) | |
| 890-1106, gnl|canFam2|chr23 (15369564-15368915) | |
| 890-1106, gnl|dasNov1|scaffold_149825 (945-1455) | |
| 890-1106, gnl|echTel1|scaffold_314100 (92475-91893) | |
| 890-1106, gnl|hg17|chr3 (32470742-32471347) | |
| 890-1106, gnl|Hg17|chr3 (32471067-32471286) | |
| 890-1106, gnl|mm7|chr9 (114408384-114407930) | |
| 890-1106, gnl|oryCun1|scaffold_202971 (6119-5479) | |
| 890-1106, gnl|panTro1|chr2 (33466448-33467056) | |
| 890-1106, gnl|rheMac2|chr2 (174928214-174928801) | |
| 890-1106, gnl|rn3|chr8 (119195413-119194905) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fty (0.527519) | |
| pgl (0.473934) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.527519) | |
| pgl (0.473934) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| med (0.116252) | |
| cty (0.10408) |