Non-Coding RNA Search

Ss1.1-Utr1-UTR010029C04.5

Sequence:


               
               AGTTCCCGGTTGAGAAGGCCGGGCTAGGAGCTCCGAGGCAGGCGCGCGGAGGGCAGGCCT
GGAGGGGGCGGGTCCGCACGGGCCTCCCAGCCGCCCGCCTCGCCGGGGAGAGGTCACGGC
GTGAGGCAGCCACCGCGATCACCGCGAGGTTGGAGCGCCGGGCTGCACTATGGCCTACTG
CCGGCAGGAAGGGAAGGATCGAATCATATTTGTGACCAAAGAAGACCATGAAACTCCAAG
CAACGCGGAGCTGGTGGCCGATGACCCCAATGATCCATACGAGGAGCACGGACTGATCCT
GCCCAATGGAGACATCAACTGGAACTGCCCGTGCCTTGGGGGAATGGCCAGCGGCCCATG
TGGGGAACAGTTCAAGTCAGCCTTCTCGTGCTTCCACTACAGCACGGAGGAGGTCAAGGG
GTCGGACTGTGTAGACCAGTTCCGGGCCATGCAGGAGTGCATGCAGAAGTACCCAGACCT
CTACCCCCAGGAGGAGGAGGAGGAGGAGGAGAGGCCGTCGGACCAGTCTGAGGAAACAGC
TGCCGCTGAGGCCTCCGCAACCAAAGAGGAGGAGGGGTCGAGCTAATGAAGGCTGGGCTC
GGGCTCGGGGCCCCAGCCTCCTTCAGAGTGACCTGAACCTCTTAGAAATGCCTTTCAGTC
GCTCTCCAGGAAAGTGTCTTTCCCTCTGTTGTTCTGTGCACTGTAATGTACAAAGTAATT
TATTGTGCTAATGGGGTCTTGGCCCCTTACCTGTACACTGAAGAAATGGGGTTGTGTGTA
TGCAGGTGTCACGTGAACCCCTGTGAACCTGTCAGCCAGTTTAGCTTGAATCCTTTTCTC
ACAATGTCCTGGATTTTGCCATTTTGAAATAATGTATGCTGAATAATCTCAGCAACCAGA
AATCATTCTGAGAGTGTCTCTTGTGAGTGAGCTGATTTATTCTGATTCATTGTTTCCCTT
TTAGTAGATGTTATACCCCATTGGAAAATGAAACAGAAACAAAACATCTTCCTTTAAGAA
TGCTGGAGTGGGGCCATGCCTCACACAAGAGGCGGGATGGCAGACCTTGAGTGTTTGAGG
AAGCAGTGCTTCGTTCCTAATACATTTGGTTTCTAGTTTTGCATTGAGCTCTATGTTTTC
TGTTTTTGGAAAGCAGAGCTTTGGACCCTCTAAATGAATCCCTTTGTGAGTGAAGAGGAA
GGCTGGGTTTTGCTGTTCTTGTTATTCCAAAAGCCCTGGTTTGGGGCCTTGTGTTCACAC
TGGCTGTGCCTCAGCCTGTTCAGAGGCAGTGTTCTTGAGAGGTGGGGACCTAATTATTAC
CAAAGTAGCAGCCAAGAGAGGAAATGGTGTCAATTAAAAGAAAAACATGATTTTTACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCCCGGTTGAGAAGGCCGGGCTAGGAGCTCCGAGGCAGGCGCGCGGAGGGCAGGCCT
GGAGGGGGCGGGTCCGCACGGGCCTCCCAGCCGCCCGCCTCGCCGGGGAGAGGTCACGGC
GTGAGGCAGCCACCGCGATCACCGCGAGGTTGGAGCGCCGGGCTGCACTATGGCCTACTG
CCGGCAGGAAGGGAAGGATCGAATCATATTTGTGACCAAAGAAGACCATGAAACTCCAAG
CAACGCGGAGCTGGTGGCCGATGACCCCAATGATCCATACGAGGAGCACGGACTGATCCT
GCCCAATGGAGACATCAACTGGAACTGCCCGTGCCTTGGGGGAATGGCCAGCGGCCCATG
TGGGGAACAGTTCAAGTCAGCCTTCTCGTGCTTCCACTACAGCACGGAGGAGGTCAAGGG
GTCGGACTGTGTAGACCAGTTCCGGGCCATGCAGGAGTGCATGCAGAAGTACCCAGACCT
CTACCCCCAGGAGGAGGAGGAGGAGGAGGAGAGGCCGTCGGACCAGTCTGAGGAAACAGC
TGCCGCTGAGGCCTCCGCAACCAAAGAGGAGGAGGGGTCGAGCTAATGAAGGCTGGGCTC
GGGCTCGGGGCCCCAGCCTCCTTCAGAGTGACCTGAACCTCTTAGAAATGCCTTTCAGTC
GCTCTCCAGGAAAGTGTCTTTCCCTCTGTTGTTCTGTGCACTGTAATGTACAAAGTAATT
TATTGTGCTAATGGGGTCTTGGCCCCTTACCTGTACACTGAAGAAATGGGGTTGTGTGTA
TGCAGGTGTCACGTGAACCCCTGTGAACCTGTCAGCCAGTTTAGCTTGAATCCTTTTCTC
ACAATGTCCTGGATTTTGCCATTTTGAAATAATGTATGCTGAATAATCTCAGCAACCAGA
AATCATTCTGAGAGTGTCTCTTGTGAGTGAGCTGATTTATTCTGATTCATTGTTTCCCTT
TTAGTAGATGTTATACCCCATTGGAAAATGAAACAGAAACAAAACATCTTCCTTTAAGAA
TGCTGGAGTGGGGCCATGCCTCACACAAGAGGCGGGATGGCAGACCTTGAGTGTTTGAGG
AAGCAGTGCTTCGTTCCTAATACATTTGGTTTCTAGTTTTGCATTGAGCTCTATGTTTTC
TGTTTTTGGAAAGCAGAGCTTTGGACCCTCTAAATGAATCCCTTTGTGAGTGAAGAGGAA
GGCTGGGTTTTGCTGTTCTTGTTATTCCAAAAGCCCTGGTTTGGGGCCTTGTGTTCACAC
TGGCTGTGCCTCAGCCTGTTCAGAGGCAGTGTTCTTGAGAGGTGGGGACCTAATTATTAC
CAAAGTAGCAGCCAAGAGAGGAAATGGTGTCAATTAAAAGAAAAACATGATTTTTACCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               CHCH4_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               CHCH4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               410-517, + strand, RNAz p=0.986175

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               410-517, + strand, RNAz p=0.986175

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-192, gnl|bosTau2|chr22 (45889149-45888960)
               

               
               1-192, gnl|Hg17|chr3 (14141371-14141155)
               

               
               1-192, gnl|Mm7|chr6 (91556045-91555818)
               


               
               290-655, gnl|bosTau2|chr22 (45883557-45883196)
               

               
               290-655, gnl|Hg17|chr3 (14129696-14129306)
               

               
               290-655, gnl|Mm7|chr6 (91547817-91547446)
               


               
               662-1380, gnl|bosTau2|chr22 (45883215-45882497)
               

               
               662-1380, gnl|Hg17|chr3 (14129344-14128579)
               

               
               662-1380, gnl|Mm7|chr6 (91547464-91546780)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-192, gnl|bosTau2|chr22 (45889149-45888960)
               

               
               1-192, gnl|Hg17|chr3 (14141371-14141155)
               

               
               1-192, gnl|Mm7|chr6 (91556045-91555818)
               


               
               290-655, gnl|bosTau2|chr22 (45883557-45883196)
               

               
               290-655, gnl|Hg17|chr3 (14129696-14129306)
               

               
               290-655, gnl|Mm7|chr6 (91547817-91547446)
               


               
               662-1380, gnl|bosTau2|chr22 (45883215-45882497)
               

               
               662-1380, gnl|Hg17|chr3 (14129344-14128579)
               

               
               662-1380, gnl|Mm7|chr6 (91547464-91546780)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               eli (0.303628)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.303628)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

	1-192, gnl\|bosTau2\|chr22 (45889149-45888960)
	1-192, gnl\|Hg17\|chr3 (14141371-14141155)
	1-192, gnl\|Mm7\|chr6 (91556045-91555818)

	290-655, gnl\|bosTau2\|chr22 (45883557-45883196)
	290-655, gnl\|Hg17\|chr3 (14129696-14129306)
	290-655, gnl\|Mm7\|chr6 (91547817-91547446)

	662-1380, gnl\|bosTau2\|chr22 (45883215-45882497)
	662-1380, gnl\|Hg17\|chr3 (14129344-14128579)
	662-1380, gnl\|Mm7\|chr6 (91547464-91546780)

	eli (0.303628)
	ill (0.175593)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	ste (0.135208)
	tra (0.123092)