Ss1.1-Utr1-UTR010029D08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCTCACAGTTGCTAGAGATGCTCAATGACTCCCAATACAACCCAAAGAGACAGACAC TTGTTTTTTCTGCCACACTGACCCTGGTACATCAAGCTCCTGCTCGAATCCTTCACAAGA AGCACGCTAAGAAAATTGACAAAACTGCCAAACTTGACCTCCTCATGCAGAAGATTGGCA TGAGGGGCAAGCCCAAGGTCATTGACCTCACACGAAACGAGGCCACGGTAGAGACACTGA CAGAGACAAAGATCCATTGTGAGACTGATGAGAAAGACTTATATCTGTACTACTTCCTGA TGCAGTATCCAGGCCGCACCCTAGTGTTTGCCAACAGTATCTCCTGCATCAAACGCCTCT CTGGGCTCCTCAAAGTCCTGGATATCATGCCACTGACCCTGCATGCCTGCATGCACCAGA AGCAGAGGCTCAGAAACTTGGAGCAGTTTGCTCATCTGGAAGATTGTGTTCTCCTGGCGA CAGATGTGGCAGCTCGGGGCCTAGATATTCCTAAAGTCCAACATGTCATCCATTACCAGG TACCTCGTACCTCAGAGATTTATGTCCACCGAAGTGGTCGAACTGCCCGTGCCACCAATG AAGGCCTCAGTCTGATGCTGGTTGGACCTGAGGATGTGATCAACTTTAAGAAGATTTACA AAACCCTCAAGAAAGATGAGGACATCCCACTGTTCCCTGTGCAGACAAAGTACATGGATG CAGTCAAGGAGCGAATCCGTTTAGCTCGGCAGATTGAGAAGGCGGAGTATCGGAACTTCC AGGCTTGTCTGCACAACTCTTGGATTGAGCAGGCAGCGGCTGCCCTTGAGATCGAACTGG AAGAAGAAATGTATAAGGGAGGAAAAGTTGACCAGCAGGAAGAGCGTCGGAGACAGAAGC AGATGAAGATCCTGAAGAAGGAGCTGCGCCAGTTACTCGCCCAGCCGTTGTTTAAAGATG ATCTGAAAACCAAGTATCCAACTCAGTCTGGCCAACCGCCGGTGCTCGGGTCTGCCCCAA GGAACGCTGAGTCTGCGCTGAGCTGCCTCTCCAGACAGAAGAAGAAGAGAAAGAGGAGGC CAAAAGAGCAGCAGCAGCAACAGCCACAGCCAAGCACAAGTGCAAAGTGAGCCCCCAGGT CAGAGTCTGGGTGACCGTGCACCGCGTCTGTGTTCTCGGGTTGTGTGGGAACCTCCCACC TTGCATTTCCCTCCACCGTCAGCCTCGCTTACAAAAATCTCCCTCTCTCCACCACTGCCC CCCAACCCAGTAGCAGGGGAGACCTCATCCAGATTTGTGTTGTTTCAGAGTAAGAATTCT GTGTAGCAGTTTGTATATTTCTGCATTCCAGTGTTTACAGGCTTCTTGTATGTTTAACTG GATTTCTGCAATTAAAGACCATGGTCAGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCTCACAGTTGCTAGAGATGCTCAATGACTCCCAATACAACCCAAAGAGACAGACAC TTGTTTTTTCTGCCACACTGACCCTGGTACATCAAGCTCCTGCTCGAATCCTTCACAAGA AGCACGCTAAGAAAATTGACAAAACTGCCAAACTTGACCTCCTCATGCAGAAGATTGGCA TGAGGGGCAAGCCCAAGGTCATTGACCTCACACGAAACGAGGCCACGGTAGAGACACTGA CAGAGACAAAGATCCATTGTGAGACTGATGAGAAAGACTTATATCTGTACTACTTCCTGA TGCAGTATCCAGGCCGCACCCTAGTGTTTGCCAACAGTATCTCCTGCATCAAACGCCTCT CTGGGCTCCTCAAAGTCCTGGATATCATGCCACTGACCCTGCATGCCTGCATGCACCAGA AGCAGAGGCTCAGAAACTTGGAGCAGTTTGCTCATCTGGAAGATTGTGTTCTCCTGGCGA CAGATGTGGCAGCTCGGGGCCTAGATATTCCTAAAGTCCAACATGTCATCCATTACCAGG TACCTCGTACCTCAGAGATTTATGTCCACCGAAGTGGTCGAACTGCCCGTGCCACCAATG AAGGCCTCAGTCTGATGCTGGTTGGACCTGAGGATGTGATCAACTTTAAGAAGATTTACA AAACCCTCAAGAAAGATGAGGACATCCCACTGTTCCCTGTGCAGACAAAGTACATGGATG CAGTCAAGGAGCGAATCCGTTTAGCTCGGCAGATTGAGAAGGCGGAGTATCGGAACTTCC AGGCTTGTCTGCACAACTCTTGGATTGAGCAGGCAGCGGCTGCCCTTGAGATCGAACTGG AAGAAGAAATGTATAAGGGAGGAAAAGTTGACCAGCAGGAAGAGCGTCGGAGACAGAAGC AGATGAAGATCCTGAAGAAGGAGCTGCGCCAGTTACTCGCCCAGCCGTTGTTTAAAGATG ATCTGAAAACCAAGTATCCAACTCAGTCTGGCCAACCGCCGGTGCTCGGGTCTGCCCCAA GGAACGCTGAGTCTGCGCTGAGCTGCCTCTCCAGACAGAAGAAGAAGAGAAAGAGGAGGC CAAAAGAGCAGCAGCAGCAACAGCCACAGCCAAGCACAAGTGCAAAGTGAGCCCCCAGGT CAGAGTCTGGGTGACCGTGCACCGCGTCTGTGTTCTCGGGTTGTGTGGGAACCTCCCACC TTGCATTTCCCTCCACCGTCAGCCTCGCTTACAAAAATCTCCCTCTCTCCACCACTGCCC CCCAACCCAGTAGCAGGGGAGACCTCATCCAGATTTGTGTTGTTTCAGAGTAAGAATTCT GTGTAGCAGTTTGTATATTTCTGCATTCCAGTGTTTACAGGCTTCTTGTATGTTTAACTG GATTTCTGCAATTAAAGACCATGGTCAGAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 80-239, - strand, RNAz p=0.942712 | |
| 320-497, - strand, RNAz p=0.862485 | |
| 538-729, + strand, RNAz p=0.932414 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-239, - strand, RNAz p=0.942712 | |
| 320-497, - strand, RNAz p=0.862485 | |
| 538-729, + strand, RNAz p=0.932414 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-497, gnl|bosTau2|chr21 (39742947-39743443) | |
| 1-497, gnl|Hg17|chr14 (93596659-93596148) | |
| 1-497, gnl|Mm7|chr12 (100913406-100912906) | |
| 538-729, gnl|bosTau2|chr21 (39748874-39749065) | |
| 538-729, gnl|canFam2|chr8 (66159666-66159880) | |
| 538-729, gnl|danRer3|chr7 (985624-985399) | |
| 538-729, gnl|dasNov1|scaffold_31917 (1646-1860) | |
| 538-729, gnl|echTel1|scaffold_244486 (3966-4165) | |
| 538-729, gnl|fr1|chrUn (69975039-69975233) | |
| 538-729, gnl|galGal2|chr5 (42230554-42230775) | |
| 538-729, gnl|hg17|chr14 (93591078-93591292) | |
| 538-729, gnl|Hg17|chr14 (93591285-93591094) | |
| 538-729, gnl|loxAfr1|scaffold_9695 (40736-40533) | |
| 538-729, gnl|mm7|chr12 (100906783-100906992) | |
| 538-729, gnl|Mm7|chr12 (100906985-100906794) | |
| 538-729, gnl|monDom2|scaffold_8 (33080573-33080777) | |
| 538-729, gnl|oryCun1|scaffold_164712 (11794-12006) | |
| 538-729, gnl|panTro1|chr15 (94036792-94037006) | |
| 538-729, gnl|rheMac2|chr7 (157271054-157271270) | |
| 538-729, gnl|rn3|chr6 (127706144-127706355) | |
| 538-729, gnl|tetNig1|chr10 (5338579-5338375) | |
| 538-729, gnl|xenTro1|scaffold_22 (3628947-3629144) | |
| 850-1410, gnl|bosTau2|chr21 (39751090-39751639) | |
| 850-1410, gnl|Hg17|chr14 (93587570-93587020) | |
| 850-1410, gnl|Mm7|chr12 (100904152-100903650) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-497, gnl|bosTau2|chr21 (39742947-39743443) | |
| 1-497, gnl|Hg17|chr14 (93596659-93596148) | |
| 1-497, gnl|Mm7|chr12 (100913406-100912906) | |
| 538-729, gnl|bosTau2|chr21 (39748874-39749065) | |
| 538-729, gnl|canFam2|chr8 (66159666-66159880) | |
| 538-729, gnl|danRer3|chr7 (985624-985399) | |
| 538-729, gnl|dasNov1|scaffold_31917 (1646-1860) | |
| 538-729, gnl|echTel1|scaffold_244486 (3966-4165) | |
| 538-729, gnl|fr1|chrUn (69975039-69975233) | |
| 538-729, gnl|galGal2|chr5 (42230554-42230775) | |
| 538-729, gnl|hg17|chr14 (93591078-93591292) | |
| 538-729, gnl|Hg17|chr14 (93591285-93591094) | |
| 538-729, gnl|loxAfr1|scaffold_9695 (40736-40533) | |
| 538-729, gnl|mm7|chr12 (100906783-100906992) | |
| 538-729, gnl|Mm7|chr12 (100906985-100906794) | |
| 538-729, gnl|monDom2|scaffold_8 (33080573-33080777) | |
| 538-729, gnl|oryCun1|scaffold_164712 (11794-12006) | |
| 538-729, gnl|panTro1|chr15 (94036792-94037006) | |
| 538-729, gnl|rheMac2|chr7 (157271054-157271270) | |
| 538-729, gnl|rn3|chr6 (127706144-127706355) | |
| 538-729, gnl|tetNig1|chr10 (5338579-5338375) | |
| 538-729, gnl|xenTro1|scaffold_22 (3628947-3629144) | |
| 850-1410, gnl|bosTau2|chr21 (39751090-39751639) | |
| 850-1410, gnl|Hg17|chr14 (93587570-93587020) | |
| 850-1410, gnl|Mm7|chr12 (100904152-100903650) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| tes (0.207814) | |
| duo (0.172801) | |
| cag (0.151194) | |
| cov (0.132153) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| duo (0.172801) | |
| cag (0.151194) | |
| cov (0.132153) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| jej (0.0989218) |