Non-Coding RNA Search

Ss1.1-Utr1-UTR010029H02.5.5

Sequence:


               
               TGGCAGATACGAAGATTATTCAGACCTGGGAGAGCTTCCCCCACGATCTCCTCTAGAGCC
AGTTTGTGAAGATGGGCCCTTTGGCCCTGTCCCAGAGGAAAAGAAAAGGACATCTCGTGA
GCTTCGAGAGCTGTGGCAAAAGGCCATTCTACAACAGATACTGCTGCTAAGGATGGAGAA
GGAAAATCAGAAGCTGCAAGCCTCTGAGAATGATCTGCTGAACAAGCGCCTAAAGCTTGA
TTATGAAGAAATCACTCCTTGTCTTAAAGAAGTAACTACAGTGTGGGAAAAGATGCTTAG
CACTCCAGGAAGATCAAAAATTAAGTTTGACATGGAAAAAATGCACTCGGCTGTTGGGCA
AGGTGTGCCACGACATCACCGGGGTGAAATCTGGAAATTCCTAGCAGAGCAATACCACCT
GAAACACCAGTTTCCCAGCAAACAGCAGCCCAAGGACACGCCGTACAAAGAACTCTTAAA
ACAGCTCACCTCCCAGCAACACGCAATTCTCATCGACCTCGGGCGAACCTTTCCAACACA
CCCGTACTTCTCTGCTCAGCTCGGAGCAGGGCAGCTGTCGCTTTACAACATTTTGAAGGC
CTACTCGCTTCTAGACCAGGAAGTCGGCTATTGCCAAGGTCTCAGCTTTGTAGCAGGCAT
TTTGCTGCTTCACATGGGTGAAGAAGAGGCGTTTAACATGCTCAAGTTTCTGATGTTTGA
CATGGGACTGCGGAAACAGTACCGGCCGGACATGATTATTTTGCAGGTCCAGATGTACCA
GCTCTCGAGGCTGCTCCATGATTACCACAGAGACCTGTACAATCACCTGGAGGAGCACGA
GATTGGGCCCAGCCTCTACGCTGCGCCCTGGTTCCTCACCGTCTTTGCCTCCCAGTTCCC
ACTGGGCTTCGTTGCCAGAGTCTTTGATATGATCTTTCTTCAGGGATCAGAGGTCATATT
TAAAGTGGCTTTAAGTCTGTTGGGAAGCCATAAGCCCTTGATTCTGCAGCATGAAAACCT
AGAAACCATAGTTGACTTCATAAAAAGCACACTCCCCAACCTGGGCTTGGTGCAGATGGA
GAAGACCATCAGTCAGGTGTTTGAGATGGACATCTCTAAACAGTTACAAGCTTATGAAGT
GGAGTACCACGTGCTTCAAGAAGAGCTTATCGATTCCTCTCCTCTCAGTGACAACCAAAG
AATGGACAAGTTAGAGAAAACCAACAGCAGCTTACGCAAACAGAACCTGGACCTCCTGGA
ACAACTGCAGGTGGCAAATGGGAGGATCCAGAGCCTCGAAGCCACCATCGAGAAGCTCCT
GACCAGTGAAAGGAAGCTGAAGCAGGCGACCCTGGCCTTAGAGCTGGAGAGGTCGGCCCT
GCTGCAGACCGTGGAGCAGCTCCGGAGGCGGACGGTGGAGCAGGGCGGCCCCGAGCCTGA
CCTCACCCTGCCGGGGCCCGCAGGCGACTGACAGCACGGGGCAGGGCAGGGCCCCCGCCA
GGGCGCAGCCCTGGAGGAGACGTTGCTCCCATCCTCCCGCTGTCCAGGCCTTAACGAGGG
AGAAGGCGGATGCTGGAGGGAGAGGAGGGGGCGTGACGCGTGCTTCTCAGGGAGGAGACT
GGCTTCCCCGCACAGATTCTTCTGAACCGACTCGCAGTGGTTTGCGCCGGTGCAGGGGCA
AGCGTCCCGGTGTTTTGGTTGTTGTCGTGTAGGTTCTACTTCGTCCCCTTCTCTGGTCCT
GGTTACTGTTCTCGGTAGATTTAGAGGCATGGACACGAATAAATGCACCTTTGTTTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCAGATACGAAGATTATTCAGACCTGGGAGAGCTTCCCCCACGATCTCCTCTAGAGCC
AGTTTGTGAAGATGGGCCCTTTGGCCCTGTCCCAGAGGAAAAGAAAAGGACATCTCGTGA
GCTTCGAGAGCTGTGGCAAAAGGCCATTCTACAACAGATACTGCTGCTAAGGATGGAGAA
GGAAAATCAGAAGCTGCAAGCCTCTGAGAATGATCTGCTGAACAAGCGCCTAAAGCTTGA
TTATGAAGAAATCACTCCTTGTCTTAAAGAAGTAACTACAGTGTGGGAAAAGATGCTTAG
CACTCCAGGAAGATCAAAAATTAAGTTTGACATGGAAAAAATGCACTCGGCTGTTGGGCA
AGGTGTGCCACGACATCACCGGGGTGAAATCTGGAAATTCCTAGCAGAGCAATACCACCT
GAAACACCAGTTTCCCAGCAAACAGCAGCCCAAGGACACGCCGTACAAAGAACTCTTAAA
ACAGCTCACCTCCCAGCAACACGCAATTCTCATCGACCTCGGGCGAACCTTTCCAACACA
CCCGTACTTCTCTGCTCAGCTCGGAGCAGGGCAGCTGTCGCTTTACAACATTTTGAAGGC
CTACTCGCTTCTAGACCAGGAAGTCGGCTATTGCCAAGGTCTCAGCTTTGTAGCAGGCAT
TTTGCTGCTTCACATGGGTGAAGAAGAGGCGTTTAACATGCTCAAGTTTCTGATGTTTGA
CATGGGACTGCGGAAACAGTACCGGCCGGACATGATTATTTTGCAGGTCCAGATGTACCA
GCTCTCGAGGCTGCTCCATGATTACCACAGAGACCTGTACAATCACCTGGAGGAGCACGA
GATTGGGCCCAGCCTCTACGCTGCGCCCTGGTTCCTCACCGTCTTTGCCTCCCAGTTCCC
ACTGGGCTTCGTTGCCAGAGTCTTTGATATGATCTTTCTTCAGGGATCAGAGGTCATATT
TAAAGTGGCTTTAAGTCTGTTGGGAAGCCATAAGCCCTTGATTCTGCAGCATGAAAACCT
AGAAACCATAGTTGACTTCATAAAAAGCACACTCCCCAACCTGGGCTTGGTGCAGATGGA
GAAGACCATCAGTCAGGTGTTTGAGATGGACATCTCTAAACAGTTACAAGCTTATGAAGT
GGAGTACCACGTGCTTCAAGAAGAGCTTATCGATTCCTCTCCTCTCAGTGACAACCAAAG
AATGGACAAGTTAGAGAAAACCAACAGCAGCTTACGCAAACAGAACCTGGACCTCCTGGA
ACAACTGCAGGTGGCAAATGGGAGGATCCAGAGCCTCGAAGCCACCATCGAGAAGCTCCT
GACCAGTGAAAGGAAGCTGAAGCAGGCGACCCTGGCCTTAGAGCTGGAGAGGTCGGCCCT
GCTGCAGACCGTGGAGCAGCTCCGGAGGCGGACGGTGGAGCAGGGCGGCCCCGAGCCTGA
CCTCACCCTGCCGGGGCCCGCAGGCGACTGACAGCACGGGGCAGGGCAGGGCCCCCGCCA
GGGCGCAGCCCTGGAGGAGACGTTGCTCCCATCCTCCCGCTGTCCAGGCCTTAACGAGGG
AGAAGGCGGATGCTGGAGGGAGAGGAGGGGGCGTGACGCGTGCTTCTCAGGGAGGAGACT
GGCTTCCCCGCACAGATTCTTCTGAACCGACTCGCAGTGGTTTGCGCCGGTGCAGGGGCA
AGCGTCCCGGTGTTTTGGTTGTTGTCGTGTAGGTTCTACTTCGTCCCCTTCTCTGGTCCT
GGTTACTGTTCTCGGTAGATTTAGAGGCATGGACACGAATAAATGCACCTTTGTTTCTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14919387|gb|AAH04675.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14919387|gb|AAH04675.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               3-161, - strand, RNAz p=0.973352
               

               
               202-441, - strand, RNAz p=0.66024
               

               
               562-681, - strand, RNAz p=0.941062
               

               
               762-881, - strand, RNAz p=0.516751
               

               
               910-1029, - strand, RNAz p=0.527961

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-161, - strand, RNAz p=0.973352
               

               
               202-441, - strand, RNAz p=0.66024
               

               
               562-681, - strand, RNAz p=0.941062
               

               
               762-881, - strand, RNAz p=0.516751
               

               
               910-1029, - strand, RNAz p=0.527961

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               3-1029, gnl|bosTau2|chr14 (35431247-35432271)
               


               
               521-768, gnl|bosTau2|chr12 (27160289-27160536)
               

               
               521-768, gnl|Hg17|chr13 (74771712-74771465)
               

               
               521-768, gnl|Mm7|chr14 (95867170-95866923)
               


               
               1063-1792, gnl|bosTau2|chr14 (35433663-35434344)
               

               
               1063-1792, gnl|Hg17|chr4 (37949286-37961799)
               

               
               1063-1792, gnl|Mm7|chr5 (63693596-63704081)
               


               
               1094-1272, gnl|bosTau2|chr12 (27173763-27173944)
               

               
               1094-1272, gnl|Hg17|chr13 (74761250-74761069)
               

               
               1094-1272, gnl|Mm7|chr14 (95859784-95859603)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1029, gnl|bosTau2|chr14 (35431247-35432271)
               


               
               521-768, gnl|bosTau2|chr12 (27160289-27160536)
               

               
               521-768, gnl|Hg17|chr13 (74771712-74771465)
               

               
               521-768, gnl|Mm7|chr14 (95867170-95866923)
               


               
               1063-1792, gnl|bosTau2|chr14 (35433663-35434344)
               

               
               1063-1792, gnl|Hg17|chr4 (37949286-37961799)
               

               
               1063-1792, gnl|Mm7|chr5 (63693596-63704081)
               


               
               1094-1272, gnl|bosTau2|chr12 (27173763-27173944)
               

               
               1094-1272, gnl|Hg17|chr13 (74761250-74761069)
               

               
               1094-1272, gnl|Mm7|chr14 (95859784-95859603)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               nca (0.410621)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.410621)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	3-161, - strand, RNAz p=0.973352
	202-441, - strand, RNAz p=0.66024
	562-681, - strand, RNAz p=0.941062
	762-881, - strand, RNAz p=0.516751
	910-1029, - strand, RNAz p=0.527961

	3-1029, gnl\|bosTau2\|chr14 (35431247-35432271)

	521-768, gnl\|bosTau2\|chr12 (27160289-27160536)
	521-768, gnl\|Hg17\|chr13 (74771712-74771465)
	521-768, gnl\|Mm7\|chr14 (95867170-95866923)

	1063-1792, gnl\|bosTau2\|chr14 (35433663-35434344)
	1063-1792, gnl\|Hg17\|chr4 (37949286-37961799)
	1063-1792, gnl\|Mm7\|chr5 (63693596-63704081)

	1094-1272, gnl\|bosTau2\|chr12 (27173763-27173944)
	1094-1272, gnl\|Hg17\|chr13 (74761250-74761069)
	1094-1272, gnl\|Mm7\|chr14 (95859784-95859603)

	nca (0.410621)
	elu (0.385356)
	lnt (0.284616)
	fce (0.271592)
	clu (0.239292)
	mas (0.210305)
	ill (0.175593)
	cki (0.165235)
	cag (0.151194)
	ute (0.132784)
	cly (0.120642)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)