Non-Coding RNA Search

Ss1.1-Utr1-UTR010029H08.5

Sequence:


               
               TCAGGGTCACCGTCCGTCATTTGTCAGTTGATGGAGCCAGTTTGACCTTTGGTTCTGTTG
CTGAAGCCAGTTTGGGACTTAACCTGTTTCTGAACCTTGAATAGACCTGCTTGGACAATG
GGTCGGGAATAGGGTTTCCTCCTTGTAAGTCAGGTGTCCAGACGTCTGGCAGGTGAATTC
CTCTGCTCGACACCCTCTCCGTCACTTTGGACTCTGGGAGTGGGCCTCTCCACGCACCTG
TGTATGTGAAAGTCATTTTACATTTCAAAGCAGTGTGTTTTTCTTATTTTTATATTTTTT
AACTCTTTATCCTTGGATGTATAAAGTGAGCTTTTGGCTTCTGTAAGTATGCTCTATGCA
CCTCTGATGTTTTATCATGTATTTATATGTTGTACACAGTACTGGCCGATTCTGTAAATG
GATGTATTGTACAGAGAACACAAACGTCTCTCTCTTATTTTACATCTTCGGCATCATTGC
ATTAAAGTGGTGTAATTGACTTCTCTCCACCCATGTCAGAGCCGCTGCTTTTGGTGCTGC
CCAATGTGAGGGGTGGACTGATTGACTTGTGACCTGCCAGGTGGCCCAACACCCCGTTAC
CAGTGGACCTGCCAACGCCTGCAGAGCCACGGGCAGCCTGGCCACTCGCTGCCGGGCAAA
TGCGTCTTGCTCTTCTCGTCTCTTCTCCTCTGACCTTCACTGGCTCCCCGCTGCCGTATG
TGACAAATCACCACCACCAGTGTTAAGTGCTTCTGAATCCGAGGGTGAGTGCCCTGGGCA
GCCCCCAGGGGGCCTTCCAGACCCGGGTCACCACCTGTCAGCTGTACCTGGGACCATGTG
CTCTTGGGGCCACAAGGCTCCACTGGACATACTTTTTATTTTTTTTTATTTTTTTTTTAT
TTTTGGCCGCACCTGCAGCATGTGGAGGTTCTTGGGGCAGGGATTGAATCCGTGCCACAG
CAGTGACGCAGGCCGCTGCAGTAACAGTGCTGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGGTCACCGTCCGTCATTTGTCAGTTGATGGAGCCAGTTTGACCTTTGGTTCTGTTG
CTGAAGCCAGTTTGGGACTTAACCTGTTTCTGAACCTTGAATAGACCTGCTTGGACAATG
GGTCGGGAATAGGGTTTCCTCCTTGTAAGTCAGGTGTCCAGACGTCTGGCAGGTGAATTC
CTCTGCTCGACACCCTCTCCGTCACTTTGGACTCTGGGAGTGGGCCTCTCCACGCACCTG
TGTATGTGAAAGTCATTTTACATTTCAAAGCAGTGTGTTTTTCTTATTTTTATATTTTTT
AACTCTTTATCCTTGGATGTATAAAGTGAGCTTTTGGCTTCTGTAAGTATGCTCTATGCA
CCTCTGATGTTTTATCATGTATTTATATGTTGTACACAGTACTGGCCGATTCTGTAAATG
GATGTATTGTACAGAGAACACAAACGTCTCTCTCTTATTTTACATCTTCGGCATCATTGC
ATTAAAGTGGTGTAATTGACTTCTCTCCACCCATGTCAGAGCCGCTGCTTTTGGTGCTGC
CCAATGTGAGGGGTGGACTGATTGACTTGTGACCTGCCAGGTGGCCCAACACCCCGTTAC
CAGTGGACCTGCCAACGCCTGCAGAGCCACGGGCAGCCTGGCCACTCGCTGCCGGGCAAA
TGCGTCTTGCTCTTCTCGTCTCTTCTCCTCTGACCTTCACTGGCTCCCCGCTGCCGTATG
TGACAAATCACCACCACCAGTGTTAAGTGCTTCTGAATCCGAGGGTGAGTGCCCTGGGCA
GCCCCCAGGGGGCCTTCCAGACCCGGGTCACCACCTGTCAGCTGTACCTGGGACCATGTG
CTCTTGGGGCCACAAGGCTCCACTGGACATACTTTTTATTTTTTTTTATTTTTTTTTTAT
TTTTGGCCGCACCTGCAGCATGTGGAGGTTCTTGGGGCAGGGATTGAATCCGTGCCACAG
CAGTGACGCAGGCCGCTGCAGTAACAGTGCTGGATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               179-295, - strand, RNAz p=0.6687
               

               
               769-872, - strand, RNAz p=0.579174

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-295, - strand, RNAz p=0.6687
               

               
               769-872, - strand, RNAz p=0.579174

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               87-872, gnl|bosTau2|chr13 (42757584-42756776)
               

               
               87-872, gnl|Hg17|chr20 (30489432-30490260)
               

               
               87-872, gnl|Mm7|chr2 (153143530-153144326)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-872, gnl|bosTau2|chr13 (42757584-42756776)
               

               
               87-872, gnl|Hg17|chr20 (30489432-30490260)
               

               
               87-872, gnl|Mm7|chr2 (153143530-153144326)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               cty (0.10408)

	179-295, - strand, RNAz p=0.6687
	769-872, - strand, RNAz p=0.579174

	87-872, gnl\|bosTau2\|chr13 (42757584-42756776)
	87-872, gnl\|Hg17\|chr20 (30489432-30490260)
	87-872, gnl\|Mm7\|chr2 (153143530-153144326)