Ss1.1-Utr1-UTR010030B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAAACCCAGGCTCCTGCAGGCACCAGGCACAGCCAGAGTGAGGGCTTCGGGCCCCCCAG GGGTCTCCCAGGTCACCCTCCACCTCCAGAAGCCATGACAGAGGACAGAAGGCTGCCCCC ACCACTGCCTCCACGACTGGACTGGTTCATACACACCCAGGTGGACCAGCTGGCCCAGGG AGGTGTCCCAGCCTGGTTCCACGGTGCCATCTCGAGAGAGGATGCCGAGAACTTGCTGGA ATCACAACCACTGGGATCCTTCCTCATCAGAGTCAGTCACAGCCACGTGGGCTACACCCT CTCTTACAAAGCCCAAAACTGCTGCCGCCACTTCATGGTGAAACTTTTGGATGATGGGAG CTTCGTGATTCCTGGGGAAGACAGGGTTTATGCCTCTCTAGATGCCTTGGTTGCCTTCCA TCAGCAGCAGCCAGTGCGGCCACATGAGGATCTGCTGACGCAGCCATGCCAGCAGAAAGA TCCAGCAAACATGGATTATGAAGATCTCTTCCTCTACTCCAACGCATTAACTAAGGAGGC CACCTGGTCCACCTATGGCCCCAGCAAACATCAGAATCCCTCCTGTCCCATGGCCACACC TGAGGAGGACTCTGCAAAGCCAGTCCTGCTCCATCGGCCCAAGGAAAGGAAGCCAGCAAC AGAGCTAGTCGGGACATCCACGGAGGAAGCCACTCCTTCCTGCCCCTCAAAAGCTCCTCT TGAGGAGACCCGCCAGAAACTCTGGAGGAACCTCAAGATGCTCCCCCAGACAGGCAAGAA GGTCCAGCAGCACCTGAAATCCCACCTAGGGGCGGTGAGCTCATCATCACGCTCAGACAC CAGGGCTTCGGTGGTGACCCACAGCTCCAGAGCTGGGGCAGGCAACTCAGCCTGGGAAGA GAACATGTACACAGACCACTTTGAGGCCACGTCCCTCGCTGGCCCCTCACAGCCCCAGCC TCCAAGAGACAGAGGTGATCCCCCCAGGAAAGCCTTGAGTTCAATCAGCTGGAGCGAGGC CACCACAAGGGTCAGGAGTTGGCACCAGGAGGTGATGAGGGCCCTGTCCTCATCACAGGC ATCCAAACCAGAGCCAATAGGCTCAAAAGGACCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAAACCCAGGCTCCTGCAGGCACCAGGCACAGCCAGAGTGAGGGCTTCGGGCCCCCCAG GGGTCTCCCAGGTCACCCTCCACCTCCAGAAGCCATGACAGAGGACAGAAGGCTGCCCCC ACCACTGCCTCCACGACTGGACTGGTTCATACACACCCAGGTGGACCAGCTGGCCCAGGG AGGTGTCCCAGCCTGGTTCCACGGTGCCATCTCGAGAGAGGATGCCGAGAACTTGCTGGA ATCACAACCACTGGGATCCTTCCTCATCAGAGTCAGTCACAGCCACGTGGGCTACACCCT CTCTTACAAAGCCCAAAACTGCTGCCGCCACTTCATGGTGAAACTTTTGGATGATGGGAG CTTCGTGATTCCTGGGGAAGACAGGGTTTATGCCTCTCTAGATGCCTTGGTTGCCTTCCA TCAGCAGCAGCCAGTGCGGCCACATGAGGATCTGCTGACGCAGCCATGCCAGCAGAAAGA TCCAGCAAACATGGATTATGAAGATCTCTTCCTCTACTCCAACGCATTAACTAAGGAGGC CACCTGGTCCACCTATGGCCCCAGCAAACATCAGAATCCCTCCTGTCCCATGGCCACACC TGAGGAGGACTCTGCAAAGCCAGTCCTGCTCCATCGGCCCAAGGAAAGGAAGCCAGCAAC AGAGCTAGTCGGGACATCCACGGAGGAAGCCACTCCTTCCTGCCCCTCAAAAGCTCCTCT TGAGGAGACCCGCCAGAAACTCTGGAGGAACCTCAAGATGCTCCCCCAGACAGGCAAGAA GGTCCAGCAGCACCTGAAATCCCACCTAGGGGCGGTGAGCTCATCATCACGCTCAGACAC CAGGGCTTCGGTGGTGACCCACAGCTCCAGAGCTGGGGCAGGCAACTCAGCCTGGGAAGA GAACATGTACACAGACCACTTTGAGGCCACGTCCCTCGCTGGCCCCTCACAGCCCCAGCC TCCAAGAGACAGAGGTGATCCCCCCAGGAAAGCCTTGAGTTCAATCAGCTGGAGCGAGGC CACCACAAGGGTCAGGAGTTGGCACCAGGAGGTGATGAGGGCCCTGTCCTCATCACAGGC ATCCAAACCAGAGCCAATAGGCTCAAAAGGACCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 715-829, - strand, RNAz p=0.766401 | |
| 998-1116, - strand, RNAz p=0.821319 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 715-829, - strand, RNAz p=0.766401 | |
| 998-1116, - strand, RNAz p=0.821319 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 68-220, gnl|bosTau2|chr7 (5094137-5094289) | |
| 68-220, gnl|Hg17|chr19 (16120530-16120686) | |
| 68-220, gnl|Mm7|chr8 (70716448-70716597) | |
| 296-475, gnl|bosTau2|chr7 (5098050-5098230) | |
| 296-475, gnl|Hg17|chr19 (16124838-16125018) | |
| 296-475, gnl|Mm7|chr8 (70720735-70720915) | |
| 715-829, gnl|bosTau2|chr7 (5099775-5099889) | |
| 715-829, gnl|canFam2|chr20 (49323475-49323022) | |
| 715-829, gnl|echTel1|scaffold_101109 (3578-3119) | |
| 715-829, gnl|hg17|chr19 (16129045-16129517) | |
| 715-829, gnl|Hg17|chr19 (16129127-16129242) | |
| 715-829, gnl|loxAfr1|scaffold_84573 (7972-7513) | |
| 715-829, gnl|mm7|chr8 (70723295-70723709) | |
| 715-829, gnl|Mm7|chr8 (70723356-70723470) | |
| 715-829, gnl|oryCun1|scaffold_155779 (18541-18097) | |
| 715-829, gnl|panTro1|chr20 (16803711-16804182) | |
| 715-829, gnl|rheMac2|chr19 (15689457-15689928) | |
| 715-829, gnl|rn3|chr16 (18061011-18060597) | |
| 854-1116, gnl|bosTau2|chr7 (5099890-5100149) | |
| 854-1116, gnl|canFam2|chr20 (49323475-49323022) | |
| 854-1116, gnl|echTel1|scaffold_101109 (3578-3119) | |
| 854-1116, gnl|hg17|chr19 (16129045-16129517) | |
| 854-1116, gnl|Hg17|chr19 (16129267-16129544) | |
| 854-1116, gnl|loxAfr1|scaffold_84573 (7972-7513) | |
| 854-1116, gnl|mm7|chr8 (70723295-70723709) | |
| 854-1116, gnl|Mm7|chr8 (70723471-70723736) | |
| 854-1116, gnl|oryCun1|scaffold_155779 (18541-18097) | |
| 854-1116, gnl|panTro1|chr20 (16803711-16804182) | |
| 854-1116, gnl|rheMac2|chr19 (15689457-15689928) | |
| 854-1116, gnl|rn3|chr16 (18061011-18060597) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-220, gnl|bosTau2|chr7 (5094137-5094289) | |
| 68-220, gnl|Hg17|chr19 (16120530-16120686) | |
| 68-220, gnl|Mm7|chr8 (70716448-70716597) | |
| 296-475, gnl|bosTau2|chr7 (5098050-5098230) | |
| 296-475, gnl|Hg17|chr19 (16124838-16125018) | |
| 296-475, gnl|Mm7|chr8 (70720735-70720915) | |
| 715-829, gnl|bosTau2|chr7 (5099775-5099889) | |
| 715-829, gnl|canFam2|chr20 (49323475-49323022) | |
| 715-829, gnl|echTel1|scaffold_101109 (3578-3119) | |
| 715-829, gnl|hg17|chr19 (16129045-16129517) | |
| 715-829, gnl|Hg17|chr19 (16129127-16129242) | |
| 715-829, gnl|loxAfr1|scaffold_84573 (7972-7513) | |
| 715-829, gnl|mm7|chr8 (70723295-70723709) | |
| 715-829, gnl|Mm7|chr8 (70723356-70723470) | |
| 715-829, gnl|oryCun1|scaffold_155779 (18541-18097) | |
| 715-829, gnl|panTro1|chr20 (16803711-16804182) | |
| 715-829, gnl|rheMac2|chr19 (15689457-15689928) | |
| 715-829, gnl|rn3|chr16 (18061011-18060597) | |
| 854-1116, gnl|bosTau2|chr7 (5099890-5100149) | |
| 854-1116, gnl|canFam2|chr20 (49323475-49323022) | |
| 854-1116, gnl|echTel1|scaffold_101109 (3578-3119) | |
| 854-1116, gnl|hg17|chr19 (16129045-16129517) | |
| 854-1116, gnl|Hg17|chr19 (16129267-16129544) | |
| 854-1116, gnl|loxAfr1|scaffold_84573 (7972-7513) | |
| 854-1116, gnl|mm7|chr8 (70723295-70723709) | |
| 854-1116, gnl|Mm7|chr8 (70723471-70723736) | |
| 854-1116, gnl|oryCun1|scaffold_155779 (18541-18097) | |
| 854-1116, gnl|panTro1|chr20 (16803711-16804182) | |
| 854-1116, gnl|rheMac2|chr19 (15689457-15689928) | |
| 854-1116, gnl|rn3|chr16 (18061011-18060597) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) | |
| pla (0.133672) | |
| jej (0.0989218) |