Ss1.1-Utr1-UTR010030B10.5
|
TTTTTTTTTTTTTTTTTTTGCTCCGCAGGGTGTCTTTAATTCCGACTCAGGATGCACCAT
CAGTGTCCCGGAGGCGTGGGTGGAATGCGGGACCTCAGTGGCCAGCCCGTGGGTGGCCCC
GCTTATCCCAGTACGAACGCAGCCAACTCAAGCCCTCTACCGTGTCTCCTTGAGGCTGGT
ACTCGCAGCCCACAAAGCCTTTGTAGCCTTCCTCTTCCAGCAGCTGGAACAGATAAGGGA
AATTCAGCTCTCCGGGGCTGCTGGGCTCCCCCCGGCCGGGGACCTGGGCCACCTGCACGT
GCCCAACAATGGGCAGGAACTCCCGGATGTTCCCAGTCAGGTTCCCATCCATGATCTGCC
AGTGGAACATGTCCATCTGTAACTGGAGGTTGGGGCTCCCAGCCTTCTGTAAGATGGCTG
CCGCCTGCTGGGGCGTATCCAGGAAGTACCGGGGGTCCGTGACGCGGGTGTTGATGGGCT
CCAGCAGTCCCACGAGGTTCTCCTGAGCCAGAACCCCAGCTGCGTGCCTCAAGTTCTCCA
GAAAAACTGTCTCCATTTCACCCCTGACTGCTGCTCGATCGGCCCCCTGGGGCACCCGGC
CAGCCATCAGATGAATCCTGGGACAGCCCAGCGCCTTGGCGTACAGCACGGCCTGCTCCA
GCCCCTCTCGAAAGGCCGCCTGCCTCCCGGGAACGGCCCCCAGCCCCATTTCCCCCTTCT
CGCGGTCTCCCGGGGGCGTGTTGATCAGCACCAGCTGCAGCCCTGCTTCCCGCGCCGCGC
GCGCCAGTGCCTCGGGTGGCTCCGCGTAAGGCCAGCCGATCTCGGCTGCCTGAAAGCCCG
AGCTGCCCGCGGCCCGGAGCCGCGCCGAGAGGCTGGCGAGCTCCGGGACAGCCGATCTCG
GCTGCCTGAAAGCCCGAGCTGCCCGCGGCCCGGAGCCGCGCCGAGAGGCTGGCGAGCTCC
GGGAACAGCCAGGACACGTTAGCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTTTTTGCTCCGCAGGGTGTCTTTAATTCCGACTCAGGATGCACCAT
CAGTGTCCCGGAGGCGTGGGTGGAATGCGGGACCTCAGTGGCCAGCCCGTGGGTGGCCCC
GCTTATCCCAGTACGAACGCAGCCAACTCAAGCCCTCTACCGTGTCTCCTTGAGGCTGGT
ACTCGCAGCCCACAAAGCCTTTGTAGCCTTCCTCTTCCAGCAGCTGGAACAGATAAGGGA
AATTCAGCTCTCCGGGGCTGCTGGGCTCCCCCCGGCCGGGGACCTGGGCCACCTGCACGT
GCCCAACAATGGGCAGGAACTCCCGGATGTTCCCAGTCAGGTTCCCATCCATGATCTGCC
AGTGGAACATGTCCATCTGTAACTGGAGGTTGGGGCTCCCAGCCTTCTGTAAGATGGCTG
CCGCCTGCTGGGGCGTATCCAGGAAGTACCGGGGGTCCGTGACGCGGGTGTTGATGGGCT
CCAGCAGTCCCACGAGGTTCTCCTGAGCCAGAACCCCAGCTGCGTGCCTCAAGTTCTCCA
GAAAAACTGTCTCCATTTCACCCCTGACTGCTGCTCGATCGGCCCCCTGGGGCACCCGGC
CAGCCATCAGATGAATCCTGGGACAGCCCAGCGCCTTGGCGTACAGCACGGCCTGCTCCA
GCCCCTCTCGAAAGGCCGCCTGCCTCCCGGGAACGGCCCCCAGCCCCATTTCCCCCTTCT
CGCGGTCTCCCGGGGGCGTGTTGATCAGCACCAGCTGCAGCCCTGCTTCCCGCGCCGCGC
GCGCCAGTGCCTCGGGTGGCTCCGCGTAAGGCCAGCCGATCTCGGCTGCCTGAAAGCCCG
AGCTGCCCGCGGCCCGGAGCCGCGCCGAGAGGCTGGCGAGCTCCGGGACAGCCGATCTCG
GCTGCCTGAAAGCCCGAGCTGCCCGCGGCCCGGAGCCGCGCCGAGAGGCTGGCGAGCTCC
GGGAACAGCCAGGACACGTTAGCC
|
|
gi|55960668|emb|CAI14890.1| |
Protein identifier
|
gi|55960668|emb|CAI14890.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
165-304, gnl|bosTau2|chr3 (71807330-71807469) |
|
165-304, gnl|Hg17|chr1 (43586170-43586309) |
|
165-304, gnl|Mm7|chr4 (117738940-117738801) |
| |
|
424-539, gnl|bosTau2|chr3 (71807866-71807979) |
|
424-539, gnl|canFam2|chr15 (19739982-19739885) |
|
424-539, gnl|danRer3|chr22 (32701308-32701397) |
|
424-539, gnl|dasNov1|scaffold_173374 (1302-1399) |
|
424-539, gnl|echTel1|scaffold_249370 (2059-1978) |
|
424-539, gnl|fr1|chrUn (254111846-254111748) |
|
424-539, gnl|galGal2|chr8 (20069656-20069753) |
|
424-539, gnl|hg17|chr1 (43586684-43586780) |
|
424-539, gnl|Hg17|chr1 (43586699-43586814) |
|
424-539, gnl|loxAfr1|scaffold_5124 (55658-55755) |
|
424-539, gnl|mm7|chr4 (117738408-117738312) |
|
424-539, gnl|Mm7|chr4 (117738391-117738278) |
|
424-539, gnl|panTro1|chr1 (44566388-44566484) |
|
424-539, gnl|rheMac2|chr1 (46359591-46359687) |
|
424-539, gnl|rn3|chr5 (138848463-138848367) |
|
424-539, gnl|xenTro1|scaffold_1 (5718960-5719034) |
| |
|
617-984, gnl|bosTau2|chr3 (71809440-71809810) |
|
617-984, gnl|Hg17|chr1 (43588149-43588537) |
|
617-984, gnl|Mm7|chr4 (117736829-117736492) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
165-304, gnl|bosTau2|chr3 (71807330-71807469) |
|
165-304, gnl|Hg17|chr1 (43586170-43586309) |
|
165-304, gnl|Mm7|chr4 (117738940-117738801) |
| |
|
424-539, gnl|bosTau2|chr3 (71807866-71807979) |
|
424-539, gnl|canFam2|chr15 (19739982-19739885) |
|
424-539, gnl|danRer3|chr22 (32701308-32701397) |
|
424-539, gnl|dasNov1|scaffold_173374 (1302-1399) |
|
424-539, gnl|echTel1|scaffold_249370 (2059-1978) |
|
424-539, gnl|fr1|chrUn (254111846-254111748) |
|
424-539, gnl|galGal2|chr8 (20069656-20069753) |
|
424-539, gnl|hg17|chr1 (43586684-43586780) |
|
424-539, gnl|Hg17|chr1 (43586699-43586814) |
|
424-539, gnl|loxAfr1|scaffold_5124 (55658-55755) |
|
424-539, gnl|mm7|chr4 (117738408-117738312) |
|
424-539, gnl|Mm7|chr4 (117738391-117738278) |
|
424-539, gnl|panTro1|chr1 (44566388-44566484) |
|
424-539, gnl|rheMac2|chr1 (46359591-46359687) |
|
424-539, gnl|rn3|chr5 (138848463-138848367) |
|
424-539, gnl|xenTro1|scaffold_1 (5718960-5719034) |
| |
|
617-984, gnl|bosTau2|chr3 (71809440-71809810) |
|
617-984, gnl|Hg17|chr1 (43588149-43588537) |
|
617-984, gnl|Mm7|chr4 (117736829-117736492) |
|
nje (0.49776) |
|
jej (0.395687) |
|
eje (0.296501) |
|
pty (0.285429) |
|
cga (0.279096) |
|
ebs (0.236602) |
|
hea (0.204499) |
|
nep (0.183925) |
|
fty (0.17584) |
|
duo (0.172801) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
cov (0.132153) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
nje (0.49776) |
|
jej (0.395687) |
|
eje (0.296501) |
|
pty (0.285429) |
|
cga (0.279096) |
|
ebs (0.236602) |
|
hea (0.204499) |
|
nep (0.183925) |
|
fty (0.17584) |
|
duo (0.172801) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
cov (0.132153) |
|
eep (0.122564) |
|
pgl (0.118483) |
