Ss1.1-Utr1-UTR010030C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTCCAGGGAGAAAAATAGACTTTATTTACAAGTAATAACATTTAGAAAAGACCC ATCCCTGGCCCTTAAAAACCTTCCCCACCACGCCCAATCCCACCCCAGCGCGAGTCTGGG GAAGGCGGGGAGGGGGGCGCGAGCTGTCCCCACCGAGGCCCAGGGCCCGTCTCTCCTGGA AGAGAGCACCCTTTTGGGCAACTGTGCCCTCAGGGGGATAGGAGCACCTGTAGACGGCAT GCTCCCCTAGGCCGATGCCCGGTGCTGGACTTGAAGAGCGAGGGCCCTGACTCAGCCCAG CCACCAGGAGTAGCAGGGACCAGGGCCTGCTCCTCCAATGGTCCCTCTTCGATCCGGAGG CCGACAGGGACACTGGCGGGGCCAAGGACCCAGCCACTCATAGTCAGCCTCGAATCCGGT TGTGATGGAGAAGTGACTCTGCTCTAAGACAACATCAGGGGCAAGGTGGGGAGAGGACCC AGACTCCTCCGAGGCGCCGGGGCCAGCGCTGAGGACACGTCTCTTTACCTGGCCAAGGTC CAGGTACCAGCTGGGGCGTGGGCAGGCATCACTGTCTCTACGGGTTTGGCCACTGGGCCT GGGAGCTGAGAGAAGGCACTGAAAGGGACAGGAGGAGGAGGACCAGGCAAGGGCAGCATC CGAGACACAGGTGGGGCCGCTCACTGGTGGCGGCTCTTTAGTGCTTTGCCTTGCCCTTGG CCCGAGGGGTGGCGGCGCTGGCCGTGGTGGTGGCGATGCGAGGAGAGCGGCGGGTCCCAC TGCGGGTGCTGGGCGAGGCCTTGGATGGCGCTTTCTTGGAGGCCGCCCTCCGCAGAAGGC TGTTGCCCAGCTTCTTGGGCGTGTTGAGGATGCTGAAGGCCATGGACTGGCGGCGGTCAG CCTGTTTAACAACAGCTGCAGCCGCTTTCTTCTGGGCCTCAGTCGTGCTCTGTCTGCGCC CCTCGTGCCTGTCCCGGGGGGTCATGGGGCGCGGGAAACAGCTGGTGGCCTTCTTAGACT CGGGGGTGCCAGGGCCCTGATGGGACTCCGAGGAGACCCGTTTGCGCTGCTGCCGGGTGG TGATGCCGGCGCCCTCGGCTATCTGGGTCGGCTGCATGCTGGCTCGGCGCAGGGTCTCCC GGGGGTCGCCGGTTTTTATCTCCTCGTCCGTGATGGTGGGCAGGCTCAGGGAGGGCCTGG ACTCCAGCGGGTAGCAGGTCTTCAGGTGGGGGGGGCACACCCGGTTGCGCTGTTGCAGCT CCGCGATGCGGTTCCAGTCATCCAGCTGCTCTGGCTCATCCTGGCACGTGCCCACGTAGA AGCTGTTCCTGCCTGGAGGAGCCCCGCTGGACACCCCAGCCTGAGAACGGCGAGCAGAGC TGCGGGTGGTGGGCCGGTAGCCAGGCAGGCTGAGCAGAGCCGAGTTGGCATCGTCAGGAG AGCCCAGGCGGGCTAGAGACTGGGTGGAGGAGGCCGCTCTGGGGCCGCCCTGGGACGCAG GGGCCGACCGCGTGCTGTAGAAGGAGGAGTTGGCGCTGTCCGGCTCCTCCACATCCAGCT TCTTGGTCATGGTGATGTTGATGATCTGCGTGGTGCGCCGGCGCGCGGAGCGGGTCTTGC GGCCCGAGTCCAGGAAGACGTCGCCCAGGGAGTCCAGGCTGCTCTCCAGCGGGGGCTGAC CCCGGGCGGGGATGGGGGTGAAGTAGAGGCTCTCCAGGGATTCTACCTTGGGGGGCAGGC GCTGGGAGACAGGGGAGGCTGGCTCGCCGGGGATACTGGTGCCATCGGGCTGGGTGCGAG GCAACTTGCTGGTGACGGTGAGAGGGGTCCCCTCCTCACAGCTCAGATCCAGGCTGTCGA TACTCAAGTCCAGCTGAGGCTTGGTCTGGGGCTCCCGGCTCTTTAAGGTGTCAGTCGCCA CCTGGAATCTGCCCAGGTCCCGAAGCTGCTGGTCGGCGTGGGCGACCTGGGCCTCCAGGC TGCGCACCTGGGCCGTGAGGTGGCGGCAGGTCTGCTCCGCCTCCTTGGTCTTCAGCCCAG CCTGCTGCAGCTCCCGGCCCAGCCGGTCCGCCTCGGCTCGCAGCTCCTTGTTCTCCGTCT GCAGCTGCTCCAGGCCCCGCAGCTGCTCCTGCAGCTCCTGGTTCTGCTGTTTCTTGGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTCCAGGGAGAAAAATAGACTTTATTTACAAGTAATAACATTTAGAAAAGACCC ATCCCTGGCCCTTAAAAACCTTCCCCACCACGCCCAATCCCACCCCAGCGCGAGTCTGGG GAAGGCGGGGAGGGGGGCGCGAGCTGTCCCCACCGAGGCCCAGGGCCCGTCTCTCCTGGA AGAGAGCACCCTTTTGGGCAACTGTGCCCTCAGGGGGATAGGAGCACCTGTAGACGGCAT GCTCCCCTAGGCCGATGCCCGGTGCTGGACTTGAAGAGCGAGGGCCCTGACTCAGCCCAG CCACCAGGAGTAGCAGGGACCAGGGCCTGCTCCTCCAATGGTCCCTCTTCGATCCGGAGG CCGACAGGGACACTGGCGGGGCCAAGGACCCAGCCACTCATAGTCAGCCTCGAATCCGGT TGTGATGGAGAAGTGACTCTGCTCTAAGACAACATCAGGGGCAAGGTGGGGAGAGGACCC AGACTCCTCCGAGGCGCCGGGGCCAGCGCTGAGGACACGTCTCTTTACCTGGCCAAGGTC CAGGTACCAGCTGGGGCGTGGGCAGGCATCACTGTCTCTACGGGTTTGGCCACTGGGCCT GGGAGCTGAGAGAAGGCACTGAAAGGGACAGGAGGAGGAGGACCAGGCAAGGGCAGCATC CGAGACACAGGTGGGGCCGCTCACTGGTGGCGGCTCTTTAGTGCTTTGCCTTGCCCTTGG CCCGAGGGGTGGCGGCGCTGGCCGTGGTGGTGGCGATGCGAGGAGAGCGGCGGGTCCCAC TGCGGGTGCTGGGCGAGGCCTTGGATGGCGCTTTCTTGGAGGCCGCCCTCCGCAGAAGGC TGTTGCCCAGCTTCTTGGGCGTGTTGAGGATGCTGAAGGCCATGGACTGGCGGCGGTCAG CCTGTTTAACAACAGCTGCAGCCGCTTTCTTCTGGGCCTCAGTCGTGCTCTGTCTGCGCC CCTCGTGCCTGTCCCGGGGGGTCATGGGGCGCGGGAAACAGCTGGTGGCCTTCTTAGACT CGGGGGTGCCAGGGCCCTGATGGGACTCCGAGGAGACCCGTTTGCGCTGCTGCCGGGTGG TGATGCCGGCGCCCTCGGCTATCTGGGTCGGCTGCATGCTGGCTCGGCGCAGGGTCTCCC GGGGGTCGCCGGTTTTTATCTCCTCGTCCGTGATGGTGGGCAGGCTCAGGGAGGGCCTGG ACTCCAGCGGGTAGCAGGTCTTCAGGTGGGGGGGGCACACCCGGTTGCGCTGTTGCAGCT CCGCGATGCGGTTCCAGTCATCCAGCTGCTCTGGCTCATCCTGGCACGTGCCCACGTAGA AGCTGTTCCTGCCTGGAGGAGCCCCGCTGGACACCCCAGCCTGAGAACGGCGAGCAGAGC TGCGGGTGGTGGGCCGGTAGCCAGGCAGGCTGAGCAGAGCCGAGTTGGCATCGTCAGGAG AGCCCAGGCGGGCTAGAGACTGGGTGGAGGAGGCCGCTCTGGGGCCGCCCTGGGACGCAG GGGCCGACCGCGTGCTGTAGAAGGAGGAGTTGGCGCTGTCCGGCTCCTCCACATCCAGCT TCTTGGTCATGGTGATGTTGATGATCTGCGTGGTGCGCCGGCGCGCGGAGCGGGTCTTGC GGCCCGAGTCCAGGAAGACGTCGCCCAGGGAGTCCAGGCTGCTCTCCAGCGGGGGCTGAC CCCGGGCGGGGATGGGGGTGAAGTAGAGGCTCTCCAGGGATTCTACCTTGGGGGGCAGGC GCTGGGAGACAGGGGAGGCTGGCTCGCCGGGGATACTGGTGCCATCGGGCTGGGTGCGAG GCAACTTGCTGGTGACGGTGAGAGGGGTCCCCTCCTCACAGCTCAGATCCAGGCTGTCGA TACTCAAGTCCAGCTGAGGCTTGGTCTGGGGCTCCCGGCTCTTTAAGGTGTCAGTCGCCA CCTGGAATCTGCCCAGGTCCCGAAGCTGCTGGTCGGCGTGGGCGACCTGGGCCTCCAGGC TGCGCACCTGGGCCGTGAGGTGGCGGCAGGTCTGCTCCGCCTCCTTGGTCTTCAGCCCAG CCTGCTGCAGCTCCCGGCCCAGCCGGTCCGCCTCGGCTCGCAGCTCCTTGTTCTCCGTCT GCAGCTGCTCCAGGCCCCGCAGCTGCTCCTGCAGCTCCTGGTTCTGCTGTTTCTTGGCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 7-2083, - strand, RNAz p=0.999962 | |
| 718-837, + strand, RNAz p=0.592736 | |
| 730-2054, + strand, RNAz p=0.804757 | |
| 1641-1760, + strand, RNAz p=0.729149 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 7-2083, - strand, RNAz p=0.999962 | |
| 718-837, + strand, RNAz p=0.592736 | |
| 730-2054, + strand, RNAz p=0.804757 | |
| 1641-1760, + strand, RNAz p=0.729149 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of Z11583, - |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 7-711, gnl|bosTau2|chr15 (30032559-30031869) | |
| 7-711, gnl|Hg17|chr11 (71391557-71392234) | |
| 7-711, gnl|Mm7|chr7 (98061059-98060333) | |
| 718-906, gnl|bosTau2|chr15 (30031515-30031327) | |
| 718-906, gnl|canFam2|chr21 (29079288-29079047) | |
| 718-906, gnl|dasNov1|scaffold_2272 (110197-109973) | |
| 718-906, gnl|hg17|chr11 (71392592-71392822) | |
| 718-906, gnl|Hg17|chr11 (71392615-71392798) | |
| 718-906, gnl|loxAfr1|scaffold_5237 (37709-37940) | |
| 718-906, gnl|mm7|chr7 (98060031-98059816) | |
| 718-906, gnl|Mm7|chr7 (98060010-98059832) | |
| 718-906, gnl|monDom2|scaffold_74 (6572929-6572708) | |
| 718-906, gnl|oryCun1|scaffold_210552 (47118-46903) | |
| 718-906, gnl|panTro1|chr9 (72661008-72661226) | |
| 718-906, gnl|rheMac2|chr14 (70041163-70041402) | |
| 718-906, gnl|rn3|chr1 (159548856-159548637) | |
| 718-906, gnl|xenTro1|scaffold_2180 (13427-13640) | |
| 1019-1196, gnl|bosTau2|chr15 (30030961-30030784) | |
| 1019-1196, gnl|canFam2|chr21 (29078580-29078203) | |
| 1019-1196, gnl|dasNov1|scaffold_2272 (109633-109240) | |
| 1019-1196, gnl|hg17|chr11 (71393226-71393640) | |
| 1019-1196, gnl|Hg17|chr11 (71393334-71393511) | |
| 1019-1196, gnl|loxAfr1|scaffold_5237 (38400-38785) | |
| 1019-1196, gnl|mm7|chr7 (98059529-98059195) | |
| 1019-1196, gnl|Mm7|chr7 (98059444-98059267) | |
| 1019-1196, gnl|monDom2|scaffold_74 (6572463-6572008) | |
| 1019-1196, gnl|oryCun1|scaffold_210552 (46584-46246) | |
| 1019-1196, gnl|panTro1|chr9 (72661630-72662044) | |
| 1019-1196, gnl|rheMac2|chr14 (70041808-70042298) | |
| 1019-1196, gnl|rn3|chr1 (159548344-159548005) | |
| 1019-1196, gnl|xenTro1|scaffold_2180 (14314-14787) | |
| 1562-1811, gnl|bosTau2|chr15 (30028553-30028304) | |
| 1562-1811, gnl|canFam2|chr21 (29076023-29075738) | |
| 1562-1811, gnl|dasNov1|scaffold_2272 (107355-107067) | |
| 1562-1811, gnl|echTel1|scaffold_238599 (4498-4214) | |
| 1562-1811, gnl|hg17|chr11 (71395846-71396132) | |
| 1562-1811, gnl|Hg17|chr11 (71395883-71396132) | |
| 1562-1811, gnl|loxAfr1|scaffold_5237 (41022-41330) | |
| 1562-1811, gnl|mm7|chr7 (98057217-98056931) | |
| 1562-1811, gnl|Mm7|chr7 (98057178-98056929) | |
| 1562-1811, gnl|monDom2|scaffold_74 (6569371-6569095) | |
| 1562-1811, gnl|oryCun1|scaffold_210552 (44109-43824) | |
| 1562-1811, gnl|panTro1|chr9 (72664247-72664533) | |
| 1562-1811, gnl|rheMac2|chr14 (70044478-70044764) | |
| 1562-1811, gnl|rn3|chr1 (159546169-159545896) | |
| 1562-1811, gnl|xenTro1|scaffold_2180 (16046-16313) | |
| 1965-2160, gnl|bosTau2|chr15 (30026796-30026601) | |
| 1965-2160, gnl|canFam2|chr21 (29074372-29074155) | |
| 1965-2160, gnl|dasNov1|scaffold_2272 (105706-105479) | |
| 1965-2160, gnl|echTel1|scaffold_238599 (2957-2739) | |
| 1965-2160, gnl|hg17|chr11 (71397642-71397859) | |
| 1965-2160, gnl|Hg17|chr11 (71397659-71397854) | |
| 1965-2160, gnl|loxAfr1|scaffold_5237 (42842-43060) | |
| 1965-2160, gnl|mm7|chr7 (98055634-98055415) | |
| 1965-2160, gnl|Mm7|chr7 (98055613-98055418) | |
| 1965-2160, gnl|monDom2|scaffold_74 (6563517-6563302) | |
| 1965-2160, gnl|panTro1|chr9 (72666043-72666260) | |
| 1965-2160, gnl|rheMac2|chr14 (70046307-70046524) | |
| 1965-2160, gnl|rn3|chr1 (159544613-159544395) | |
| 1965-2160, gnl|xenTro1|scaffold_2180 (17652-17881) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-711, gnl|bosTau2|chr15 (30032559-30031869) | |
| 7-711, gnl|Hg17|chr11 (71391557-71392234) | |
| 7-711, gnl|Mm7|chr7 (98061059-98060333) | |
| 718-906, gnl|bosTau2|chr15 (30031515-30031327) | |
| 718-906, gnl|canFam2|chr21 (29079288-29079047) | |
| 718-906, gnl|dasNov1|scaffold_2272 (110197-109973) | |
| 718-906, gnl|hg17|chr11 (71392592-71392822) | |
| 718-906, gnl|Hg17|chr11 (71392615-71392798) | |
| 718-906, gnl|loxAfr1|scaffold_5237 (37709-37940) | |
| 718-906, gnl|mm7|chr7 (98060031-98059816) | |
| 718-906, gnl|Mm7|chr7 (98060010-98059832) | |
| 718-906, gnl|monDom2|scaffold_74 (6572929-6572708) | |
| 718-906, gnl|oryCun1|scaffold_210552 (47118-46903) | |
| 718-906, gnl|panTro1|chr9 (72661008-72661226) | |
| 718-906, gnl|rheMac2|chr14 (70041163-70041402) | |
| 718-906, gnl|rn3|chr1 (159548856-159548637) | |
| 718-906, gnl|xenTro1|scaffold_2180 (13427-13640) | |
| 1019-1196, gnl|bosTau2|chr15 (30030961-30030784) | |
| 1019-1196, gnl|canFam2|chr21 (29078580-29078203) | |
| 1019-1196, gnl|dasNov1|scaffold_2272 (109633-109240) | |
| 1019-1196, gnl|hg17|chr11 (71393226-71393640) | |
| 1019-1196, gnl|Hg17|chr11 (71393334-71393511) | |
| 1019-1196, gnl|loxAfr1|scaffold_5237 (38400-38785) | |
| 1019-1196, gnl|mm7|chr7 (98059529-98059195) | |
| 1019-1196, gnl|Mm7|chr7 (98059444-98059267) | |
| 1019-1196, gnl|monDom2|scaffold_74 (6572463-6572008) | |
| 1019-1196, gnl|oryCun1|scaffold_210552 (46584-46246) | |
| 1019-1196, gnl|panTro1|chr9 (72661630-72662044) | |
| 1019-1196, gnl|rheMac2|chr14 (70041808-70042298) | |
| 1019-1196, gnl|rn3|chr1 (159548344-159548005) | |
| 1019-1196, gnl|xenTro1|scaffold_2180 (14314-14787) | |
| 1562-1811, gnl|bosTau2|chr15 (30028553-30028304) | |
| 1562-1811, gnl|canFam2|chr21 (29076023-29075738) | |
| 1562-1811, gnl|dasNov1|scaffold_2272 (107355-107067) | |
| 1562-1811, gnl|echTel1|scaffold_238599 (4498-4214) | |
| 1562-1811, gnl|hg17|chr11 (71395846-71396132) | |
| 1562-1811, gnl|Hg17|chr11 (71395883-71396132) | |
| 1562-1811, gnl|loxAfr1|scaffold_5237 (41022-41330) | |
| 1562-1811, gnl|mm7|chr7 (98057217-98056931) | |
| 1562-1811, gnl|Mm7|chr7 (98057178-98056929) | |
| 1562-1811, gnl|monDom2|scaffold_74 (6569371-6569095) | |
| 1562-1811, gnl|oryCun1|scaffold_210552 (44109-43824) | |
| 1562-1811, gnl|panTro1|chr9 (72664247-72664533) | |
| 1562-1811, gnl|rheMac2|chr14 (70044478-70044764) | |
| 1562-1811, gnl|rn3|chr1 (159546169-159545896) | |
| 1562-1811, gnl|xenTro1|scaffold_2180 (16046-16313) | |
| 1965-2160, gnl|bosTau2|chr15 (30026796-30026601) | |
| 1965-2160, gnl|canFam2|chr21 (29074372-29074155) | |
| 1965-2160, gnl|dasNov1|scaffold_2272 (105706-105479) | |
| 1965-2160, gnl|echTel1|scaffold_238599 (2957-2739) | |
| 1965-2160, gnl|hg17|chr11 (71397642-71397859) | |
| 1965-2160, gnl|Hg17|chr11 (71397659-71397854) | |
| 1965-2160, gnl|loxAfr1|scaffold_5237 (42842-43060) | |
| 1965-2160, gnl|mm7|chr7 (98055634-98055415) | |
| 1965-2160, gnl|Mm7|chr7 (98055613-98055418) | |
| 1965-2160, gnl|monDom2|scaffold_74 (6563517-6563302) | |
| 1965-2160, gnl|panTro1|chr9 (72666043-72666260) | |
| 1965-2160, gnl|rheMac2|chr14 (70046307-70046524) | |
| 1965-2160, gnl|rn3|chr1 (159544613-159544395) | |
| 1965-2160, gnl|xenTro1|scaffold_2180 (17652-17881) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cga (0.558191) | |
| cag (0.453583) | |
| pla (0.267344) | |
| clu (0.239292) | |
| cty (0.20816) | |
| eli (0.151814) | |
| pty (0.142714) | |
| ebs (0.118301) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.558191) | |
| cag (0.453583) | |
| pla (0.267344) | |
| clu (0.239292) | |
| cty (0.20816) | |
| eli (0.151814) | |
| pty (0.142714) | |
| ebs (0.118301) |