Non-Coding RNA Search

Ss1.1-Utr1-UTR010030G08.5

Sequence:


               
               TAGGGGCGGCGGCGGAGGAGGATGGAGATCCCGGTGCCTGTGCAGCCGTCTTGGCTGCGC
CGCGCCTCGGCCCCGTTGCCCGGGCTTTCGGCTCCCGGGCGCCTCTTCGACCAGCGCTTC
GGCGAGGGGCTGCTGGAGGCCGAGCTGGCTGCGCTCTGCCCCGCGACGCTGGCCCCCTAC
TACCTGCGCGCACCCAGCGTGGCGCTGCCTACCGCCCAGGTGCCAACCGATCCCGGGCAT
TTCTCGGTGCTGCTGGATGTGAAGCACTTCTCGCCGGAGGAAATCGCCGTCAAGGTGGTT
GGCGAACATGTGGAGGTGCATGCGCGCCACGAGGAGCGCCCGGATGAGCACGGATACATC
GCGCGCGAGTTCCACCGCCGCTACCGCTTGCCGCCTGGTGTCGACCCGGCGGCCGTGACG
TCCGCTCTGTCCCCTGAAGGCGTCCTGTCCATCCAGGCAGCACCTGCGCCGGCCCAAGGT
CCATTGCCGTCGCCACCGGCTGCTGCCAAGTAGGGGTCAGAGAACCCTGGGAGCCGCCTC
AGGCCCCGCCTTTTAAAGCCGACCTGACTCCGCCCAGCCAGATGTCCCCCGGCGCGCGCC
AAGACTATCCGCCCACCCCACCTGGGATCTGCCTTGACCCTTCCAACCTAGACTCAGTCC
TGATAACCCAGGCCTTTACACTGACACTCCGGGCTCCTACACCCTCTCCAGCTTACAAAC
CTCCAGACACTTCTCTAGTTTCCAGACCCTACAAAGCACTGTCCCTCAGCCTGGTCTCCC
ATCCCCAAGGACCCCACTTGGCATAAAACCCCACTCCAGACACCCTATTTCCTTCTGACT
CCTCTAGGCAAACATCTCCACACCCCGTTTCAATCCACGCGCCAAGATTTTGGTGGAGAC
AGCCCTGCCCCCACCCTAAACCTAGGCAAAACATGCATAATCCCTGCTTCCCCTCAAAGG
TCCCAGACTATGCACAGACCTCCCACCCTCAACCATCCTGGCCTGGTCCACAACCTCTGG
ATCCTTCCCCTCATTCCAAGCAGCTACTCCAGTACCCCTCACCCTCTCCCCTCAGCCATC
TTCTAACTTGAAACCTCAGCCAGCTACCCCCAGACTCTTGAACCCTTTTTCTAATCCCCT
ATTCTAGGCCAACCAGGACCCTCAGCCTCAAACTGTACAGATACCTACCCCATCTCCCCA
GATGCTGCACAGATATCCTAGGCTCCCATCTCCAGCTCTAACCAGAACCCCCCCTGTCTT
GTCCCTCAAGTCTCCAACCACATAATCCCAGGCAATCCACTTTCCACACCCCTCCCCCTT
ATTCTCCAAGATCCAAAGCAGCAGCCATTTTCTTTGGCGCTCCACAATCTTTCTCCCTCC
TTGAGTTTCTTGACGCCCCCATCCCCTCACCCAGGCCCACTCCCCCAATAAATGTGCTGG
AGCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGGGCGGCGGCGGAGGAGGATGGAGATCCCGGTGCCTGTGCAGCCGTCTTGGCTGCGC
CGCGCCTCGGCCCCGTTGCCCGGGCTTTCGGCTCCCGGGCGCCTCTTCGACCAGCGCTTC
GGCGAGGGGCTGCTGGAGGCCGAGCTGGCTGCGCTCTGCCCCGCGACGCTGGCCCCCTAC
TACCTGCGCGCACCCAGCGTGGCGCTGCCTACCGCCCAGGTGCCAACCGATCCCGGGCAT
TTCTCGGTGCTGCTGGATGTGAAGCACTTCTCGCCGGAGGAAATCGCCGTCAAGGTGGTT
GGCGAACATGTGGAGGTGCATGCGCGCCACGAGGAGCGCCCGGATGAGCACGGATACATC
GCGCGCGAGTTCCACCGCCGCTACCGCTTGCCGCCTGGTGTCGACCCGGCGGCCGTGACG
TCCGCTCTGTCCCCTGAAGGCGTCCTGTCCATCCAGGCAGCACCTGCGCCGGCCCAAGGT
CCATTGCCGTCGCCACCGGCTGCTGCCAAGTAGGGGTCAGAGAACCCTGGGAGCCGCCTC
AGGCCCCGCCTTTTAAAGCCGACCTGACTCCGCCCAGCCAGATGTCCCCCGGCGCGCGCC
AAGACTATCCGCCCACCCCACCTGGGATCTGCCTTGACCCTTCCAACCTAGACTCAGTCC
TGATAACCCAGGCCTTTACACTGACACTCCGGGCTCCTACACCCTCTCCAGCTTACAAAC
CTCCAGACACTTCTCTAGTTTCCAGACCCTACAAAGCACTGTCCCTCAGCCTGGTCTCCC
ATCCCCAAGGACCCCACTTGGCATAAAACCCCACTCCAGACACCCTATTTCCTTCTGACT
CCTCTAGGCAAACATCTCCACACCCCGTTTCAATCCACGCGCCAAGATTTTGGTGGAGAC
AGCCCTGCCCCCACCCTAAACCTAGGCAAAACATGCATAATCCCTGCTTCCCCTCAAAGG
TCCCAGACTATGCACAGACCTCCCACCCTCAACCATCCTGGCCTGGTCCACAACCTCTGG
ATCCTTCCCCTCATTCCAAGCAGCTACTCCAGTACCCCTCACCCTCTCCCCTCAGCCATC
TTCTAACTTGAAACCTCAGCCAGCTACCCCCAGACTCTTGAACCCTTTTTCTAATCCCCT
ATTCTAGGCCAACCAGGACCCTCAGCCTCAAACTGTACAGATACCTACCCCATCTCCCCA
GATGCTGCACAGATATCCTAGGCTCCCATCTCCAGCTCTAACCAGAACCCCCCCTGTCTT
GTCCCTCAAGTCTCCAACCACATAATCCCAGGCAATCCACTTTCCACACCCCTCCCCCTT
ATTCTCCAAGATCCAAAGCAGCAGCCATTTTCTTTGGCGCTCCACAATCTTTCTCCCTCC
TTGAGTTTCTTGACGCCCCCATCCCCTCACCCAGGCCCACTCCCCCAATAAATGTGCTGG
AGCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16552494|dbj|BAB71323.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16552494|dbj|BAB71323.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               821-926, - strand, RNAz p=0.922235

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               821-926, - strand, RNAz p=0.922235

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-228, gnl|bosTau2|chr18 (36902495-36902271)
               

               
               4-228, gnl|Hg17|chr19 (40939762-40939543)
               

               
               4-228, gnl|Mm7|chr7 (27494537-27494765)
               


               
               339-1451, gnl|bosTau2|chr18 (36901040-36899958)
               

               
               339-1451, gnl|Hg17|chr19 (40938428-40937307)
               

               
               339-1451, gnl|Mm7|chr7 (27495688-27496666)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-228, gnl|bosTau2|chr18 (36902495-36902271)
               

               
               4-228, gnl|Hg17|chr19 (40939762-40939543)
               

               
               4-228, gnl|Mm7|chr7 (27494537-27494765)
               


               
               339-1451, gnl|bosTau2|chr18 (36901040-36899958)
               

               
               339-1451, gnl|Hg17|chr19 (40938428-40937307)
               

               
               339-1451, gnl|Mm7|chr7 (27495688-27496666)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               mas (2.10305)
               

               
               nms (1.28315)
               

               
               jca (0.911681)
               

               
               hlv (0.835538)
               

               
               ton (0.702001)
               

               
               med (0.58126)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               nco (0.323468)
               

               
               hyp (0.285673)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (2.10305)
               

               
               nms (1.28315)
               

               
               jca (0.911681)
               

               
               hlv (0.835538)
               

               
               ton (0.702001)
               

               
               med (0.58126)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               nco (0.323468)
               

               
               hyp (0.285673)
               

               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	4-228, gnl\|bosTau2\|chr18 (36902495-36902271)
	4-228, gnl\|Hg17\|chr19 (40939762-40939543)
	4-228, gnl\|Mm7\|chr7 (27494537-27494765)

	339-1451, gnl\|bosTau2\|chr18 (36901040-36899958)
	339-1451, gnl\|Hg17\|chr19 (40938428-40937307)
	339-1451, gnl\|Mm7\|chr7 (27495688-27496666)

	mas (2.10305)
	nms (1.28315)
	jca (0.911681)
	hlv (0.835538)
	ton (0.702001)
	med (0.58126)
	cov (0.396458)
	nep (0.36785)
	eep (0.367692)
	eru (0.360144)
	nco (0.323468)
	hyp (0.285673)
	nca (0.273748)
	ese (0.253004)
	hea (0.204499)
	fcc (0.197785)
	fbs (0.175346)
	cut (0.169924)
	csp (0.161186)
	fat (0.147427)
	pla (0.133672)
	nmm (0.132802)
	cly (0.120642)
	pgl (0.118483)
	ebs (0.118301)
	eje (0.0988338)