Ss1.1-Utr1-UTR010030H03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGAGCCTGGGGGCACGCGTGCGTACTCGGGTAGATTCCCGTTTAGTCCGGTTCTGGCC CAGTTGTCCTCGCAGGGACCAGAACGGGCCGAAGCGCTGCGTCTGCGGGAAGAAGCGAGG TTCAGTTAAGTCTTCAGAAAATACAACATAAGAATGGCTTCTAAAAGGGCTCTGGTCATC CTGGCTAAAGGAGCAGAGGAGATGGAGACGGTTATTCCTGTAGATGTCATGAGACGAGCT GGAATTAAGGTCACCGTTGCAGGCCTGGCTGGAAAAGATCCGGTGCAGTGTAGCCGTGAT GTTGTCATTTGTCCCGACGCCAGCCTGGAAGATGCCAAAAAAGAGGGACCTTATGACGTG GTGGTTCTGCCGGGAGGCAATCTGGGTGCACAGAATTTATCGGAGTCTGCTGCTGTGAAG GACATCCTGAAGGAGCAGGAGAAGAGGAAGGGCCTCATAGCAGCCATCTGTGCAGGTCCC ACGGCTCTGTTGGCTCATGAGATCGGTTTTGGAAGCAAAGTTACGACGCACCCACTTGCT AAAGACAAGATGATGAACGGAAGTCATTACAGCTACTCAGAGAATCGCGTGGAAAAGGAC GGTCTGATCCTCACCAGCCGGGGGCCCGGAACCAGCTTCGAGTTTGCTCTGGCCATTGTT GAGGCCCTGGCCGGCAAGGAGGTGGCCGACCAAGTGAAGGCCCCGCTTGTTCTGAGAGAC TAGAGCCGAGCGGGCTGCCCGGAACCCCTCCCGCCGAGGGCGCTTTAAACCCAGAGGGTG GCTCTGTGCCTGCCCCCGAGGCGAGCTTGTGACCTGACAGCTGCAGATGCTCTCCCCACA GTCGTGTCCCCACATTTCAGACCCTGCTTCCCGAATAAATAGGGCATTTAGCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGAGCCTGGGGGCACGCGTGCGTACTCGGGTAGATTCCCGTTTAGTCCGGTTCTGGCC CAGTTGTCCTCGCAGGGACCAGAACGGGCCGAAGCGCTGCGTCTGCGGGAAGAAGCGAGG TTCAGTTAAGTCTTCAGAAAATACAACATAAGAATGGCTTCTAAAAGGGCTCTGGTCATC CTGGCTAAAGGAGCAGAGGAGATGGAGACGGTTATTCCTGTAGATGTCATGAGACGAGCT GGAATTAAGGTCACCGTTGCAGGCCTGGCTGGAAAAGATCCGGTGCAGTGTAGCCGTGAT GTTGTCATTTGTCCCGACGCCAGCCTGGAAGATGCCAAAAAAGAGGGACCTTATGACGTG GTGGTTCTGCCGGGAGGCAATCTGGGTGCACAGAATTTATCGGAGTCTGCTGCTGTGAAG GACATCCTGAAGGAGCAGGAGAAGAGGAAGGGCCTCATAGCAGCCATCTGTGCAGGTCCC ACGGCTCTGTTGGCTCATGAGATCGGTTTTGGAAGCAAAGTTACGACGCACCCACTTGCT AAAGACAAGATGATGAACGGAAGTCATTACAGCTACTCAGAGAATCGCGTGGAAAAGGAC GGTCTGATCCTCACCAGCCGGGGGCCCGGAACCAGCTTCGAGTTTGCTCTGGCCATTGTT GAGGCCCTGGCCGGCAAGGAGGTGGCCGACCAAGTGAAGGCCCCGCTTGTTCTGAGAGAC TAGAGCCGAGCGGGCTGCCCGGAACCCCTCCCGCCGAGGGCGCTTTAAACCCAGAGGGTG GCTCTGTGCCTGCCCCCGAGGCGAGCTTGTGACCTGACAGCTGCAGATGCTCTCCCCACA GTCGTGTCCCCACATTTCAGACCCTGCTTCCCGAATAAATAGGGCATTTAGCAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 121-243, gnl|bosTau2|chr16 (30108414-30108536) | |
| 121-243, gnl|Hg17|chr1 (7957079-7957201) | |
| 121-243, gnl|Mm7|chr4 (149897982-149897860) | |
| 244-346, gnl|bosTau2|chr16 (30110110-30110212) | |
| 244-346, gnl|canFam2|chr5 (64577575-64577696) | |
| 244-346, gnl|canFam2|chr5 (64577578-64577678) | |
| 244-346, gnl|canFam2|chr5 (64577577-64577677) | |
| 244-346, gnl|danRer3|chr8 (31280402-31280512) | |
| 244-346, gnl|dasNov1|scaffold_11808 (10432-10311) | |
| 244-346, gnl|dasNov1|scaffold_66352 (7123-7023) | |
| 244-346, gnl|dasNov1|scaffold_66352 (7124-7024) | |
| 244-346, gnl|echTel1|scaffold_290495 (1231-1352) | |
| 244-346, gnl|echTel1|scaffold_315500 (178144-178044) | |
| 244-346, gnl|echTel1|scaffold_315500 (178145-178045) | |
| 244-346, gnl|fr1|chrUn (29939731-29939859) | |
| 244-346, gnl|fr1|chrUn (29939734-29939834) | |
| 244-346, gnl|fr1|chrUn (29939733-29939833) | |
| 244-346, gnl|hg17|chr1 (7959647-7959768) | |
| 244-346, gnl|Hg17|chr1 (7959650-7959752) | |
| 244-346, gnl|hg17|chr12 (48275260-48275360) | |
| 244-346, gnl|hg17|chr9 (95760062-95760162) | |
| 244-346, gnl|loxAfr1|scaffold_7865 (99506-99385) | |
| 244-346, gnl|loxAfr1|scaffold_7865 (99503-99403) | |
| 244-346, gnl|loxAfr1|scaffold_7865 (99504-99404) | |
| 244-346, gnl|mm7|chr3 (140396099-140395979) | |
| 244-346, gnl|mm7|chr3 (140396100-140395980) | |
| 244-346, gnl|mm7|chr4 (149896687-149896565) | |
| 244-346, gnl|Mm7|chr4 (149896683-149896581) | |
| 244-346, gnl|monDom2|scaffold_148 (1913264-1913143) | |
| 244-346, gnl|oryCun1|scaffold_200039 (4156-4035) | |
| 244-346, gnl|oryCun1|scaffold_200039 (4153-4053) | |
| 244-346, gnl|oryCun1|scaffold_200039 (4154-4054) | |
| 244-346, gnl|panTro1|chr1 (7957026-7957145) | |
| 244-346, gnl|panTro1|chr10 (49457697-49457797) | |
| 244-346, gnl|panTro1|chrUn_random (30842784-30842684) | |
| 244-346, gnl|rheMac2|chr1 (10994070-10994191) | |
| 244-346, gnl|rheMac2|chr11 (46737546-46737646) | |
| 244-346, gnl|rheMac2|chr15 (107745777-107745876) | |
| 244-346, gnl|rn3|chr2 (171482679-171482779) | |
| 244-346, gnl|rn3|chr2 (171482678-171482778) | |
| 244-346, gnl|rn3|chr5 (168069411-168069289) | |
| 244-346, gnl|tetNig1|chr11 (3983480-3983373) | |
| 244-346, gnl|tetNig1|chr11 (3983478-3983378) | |
| 244-346, gnl|tetNig1|chr11 (3983479-3983379) | |
| 563-733, gnl|bosTau2|chr16 (30123765-30123935) | |
| 563-733, gnl|canFam2|chr5 (64590359-64590556) | |
| 563-733, gnl|canFam2|chr5 (64590376-64590539) | |
| 563-733, gnl|danRer3|chr8 (31292576-31292770) | |
| 563-733, gnl|dasNov1|scaffold_66352 (6808-6625) | |
| 563-733, gnl|dasNov1|scaffold_66352 (6803-6640) | |
| 563-733, gnl|echTel1|scaffold_300305 (3949-4164) | |
| 563-733, gnl|echTel1|scaffold_315500 (177829-177668) | |
| 563-733, gnl|fr1|chrUn (29942008-29942195) | |
| 563-733, gnl|fr1|chrUn (29940044-29940203) | |
| 563-733, gnl|hg17|chr1 (7979187-7979401) | |
| 563-733, gnl|Hg17|chr1 (7979220-7979390) | |
| 563-733, gnl|hg17|chr9 (95760382-95760545) | |
| 563-733, gnl|loxAfr1|scaffold_66323 (1550-1336) | |
| 563-733, gnl|loxAfr1|scaffold_66323 (1516-1353) | |
| 563-733, gnl|mm7|chr3 (140395757-140395630) | |
| 563-733, gnl|mm7|chr4 (149887031-149886851) | |
| 563-733, gnl|Mm7|chr4 (149887013-149886851) | |
| 563-733, gnl|monDom2|scaffold_148 (1896021-1895840) | |
| 563-733, gnl|panTro1|chr1 (7976580-7976794) | |
| 563-733, gnl|panTro1|chrUn_random (30842464-30842301) | |
| 563-733, gnl|rheMac2|chr1 (11014285-11014499) | |
| 563-733, gnl|rheMac2|chr15 (107746091-107746251) | |
| 563-733, gnl|rn3|chr2 (171482996-171483164) | |
| 563-733, gnl|rn3|chr5 (168060701-168060521) | |
| 563-733, gnl|tetNig1|chr11 (3981129-3980942) | |
| 563-733, gnl|xenTro1|scaffold_503 (476388-476214) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-243, gnl|bosTau2|chr16 (30108414-30108536) | |
| 121-243, gnl|Hg17|chr1 (7957079-7957201) | |
| 121-243, gnl|Mm7|chr4 (149897982-149897860) | |
| 244-346, gnl|bosTau2|chr16 (30110110-30110212) | |
| 244-346, gnl|canFam2|chr5 (64577575-64577696) | |
| 244-346, gnl|canFam2|chr5 (64577578-64577678) | |
| 244-346, gnl|canFam2|chr5 (64577577-64577677) | |
| 244-346, gnl|danRer3|chr8 (31280402-31280512) | |
| 244-346, gnl|dasNov1|scaffold_11808 (10432-10311) | |
| 244-346, gnl|dasNov1|scaffold_66352 (7123-7023) | |
| 244-346, gnl|dasNov1|scaffold_66352 (7124-7024) | |
| 244-346, gnl|echTel1|scaffold_290495 (1231-1352) | |
| 244-346, gnl|echTel1|scaffold_315500 (178144-178044) | |
| 244-346, gnl|echTel1|scaffold_315500 (178145-178045) | |
| 244-346, gnl|fr1|chrUn (29939731-29939859) | |
| 244-346, gnl|fr1|chrUn (29939734-29939834) | |
| 244-346, gnl|fr1|chrUn (29939733-29939833) | |
| 244-346, gnl|hg17|chr1 (7959647-7959768) | |
| 244-346, gnl|Hg17|chr1 (7959650-7959752) | |
| 244-346, gnl|hg17|chr12 (48275260-48275360) | |
| 244-346, gnl|hg17|chr9 (95760062-95760162) | |
| 244-346, gnl|loxAfr1|scaffold_7865 (99506-99385) | |
| 244-346, gnl|loxAfr1|scaffold_7865 (99503-99403) | |
| 244-346, gnl|loxAfr1|scaffold_7865 (99504-99404) | |
| 244-346, gnl|mm7|chr3 (140396099-140395979) | |
| 244-346, gnl|mm7|chr3 (140396100-140395980) | |
| 244-346, gnl|mm7|chr4 (149896687-149896565) | |
| 244-346, gnl|Mm7|chr4 (149896683-149896581) | |
| 244-346, gnl|monDom2|scaffold_148 (1913264-1913143) | |
| 244-346, gnl|oryCun1|scaffold_200039 (4156-4035) | |
| 244-346, gnl|oryCun1|scaffold_200039 (4153-4053) | |
| 244-346, gnl|oryCun1|scaffold_200039 (4154-4054) | |
| 244-346, gnl|panTro1|chr1 (7957026-7957145) | |
| 244-346, gnl|panTro1|chr10 (49457697-49457797) | |
| 244-346, gnl|panTro1|chrUn_random (30842784-30842684) | |
| 244-346, gnl|rheMac2|chr1 (10994070-10994191) | |
| 244-346, gnl|rheMac2|chr11 (46737546-46737646) | |
| 244-346, gnl|rheMac2|chr15 (107745777-107745876) | |
| 244-346, gnl|rn3|chr2 (171482679-171482779) | |
| 244-346, gnl|rn3|chr2 (171482678-171482778) | |
| 244-346, gnl|rn3|chr5 (168069411-168069289) | |
| 244-346, gnl|tetNig1|chr11 (3983480-3983373) | |
| 244-346, gnl|tetNig1|chr11 (3983478-3983378) | |
| 244-346, gnl|tetNig1|chr11 (3983479-3983379) | |
| 563-733, gnl|bosTau2|chr16 (30123765-30123935) | |
| 563-733, gnl|canFam2|chr5 (64590359-64590556) | |
| 563-733, gnl|canFam2|chr5 (64590376-64590539) | |
| 563-733, gnl|danRer3|chr8 (31292576-31292770) | |
| 563-733, gnl|dasNov1|scaffold_66352 (6808-6625) | |
| 563-733, gnl|dasNov1|scaffold_66352 (6803-6640) | |
| 563-733, gnl|echTel1|scaffold_300305 (3949-4164) | |
| 563-733, gnl|echTel1|scaffold_315500 (177829-177668) | |
| 563-733, gnl|fr1|chrUn (29942008-29942195) | |
| 563-733, gnl|fr1|chrUn (29940044-29940203) | |
| 563-733, gnl|hg17|chr1 (7979187-7979401) | |
| 563-733, gnl|Hg17|chr1 (7979220-7979390) | |
| 563-733, gnl|hg17|chr9 (95760382-95760545) | |
| 563-733, gnl|loxAfr1|scaffold_66323 (1550-1336) | |
| 563-733, gnl|loxAfr1|scaffold_66323 (1516-1353) | |
| 563-733, gnl|mm7|chr3 (140395757-140395630) | |
| 563-733, gnl|mm7|chr4 (149887031-149886851) | |
| 563-733, gnl|Mm7|chr4 (149887013-149886851) | |
| 563-733, gnl|monDom2|scaffold_148 (1896021-1895840) | |
| 563-733, gnl|panTro1|chr1 (7976580-7976794) | |
| 563-733, gnl|panTro1|chrUn_random (30842464-30842301) | |
| 563-733, gnl|rheMac2|chr1 (11014285-11014499) | |
| 563-733, gnl|rheMac2|chr15 (107746091-107746251) | |
| 563-733, gnl|rn3|chr2 (171482996-171483164) | |
| 563-733, gnl|rn3|chr5 (168060701-168060521) | |
| 563-733, gnl|tetNig1|chr11 (3981129-3980942) | |
| 563-733, gnl|xenTro1|scaffold_503 (476388-476214) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| elu (1.15607) | |
| ese (0.885516) | |
| eye (0.852515) | |
| cov (0.792917) | |
| hyp (0.714184) | |
| fbs (0.701385) | |
| csp (0.644745) | |
| eli (0.607257) | |
| cly (0.603209) | |
| ecc (0.575175) | |
| nlu (0.575043) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| nje (0.49776) | |
| ece (0.45861) | |
| cag (0.453583) | |
| spl (0.429553) | |
| nms (0.427716) | |
| ebs (0.354904) | |
| ton (0.351) | |
| duo (0.345602) | |
| cki (0.330469) | |
| nco (0.323468) | |
| eje (0.296501) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| mas (0.210305) | |
| hea (0.204499) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cje (0.165235) | |
| cli (0.152812) | |
| nca (0.136874) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (1.15607) | |
| ese (0.885516) | |
| eye (0.852515) | |
| cov (0.792917) | |
| hyp (0.714184) | |
| fbs (0.701385) | |
| csp (0.644745) | |
| eli (0.607257) | |
| cly (0.603209) | |
| ecc (0.575175) | |
| nlu (0.575043) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| nje (0.49776) | |
| ece (0.45861) | |
| cag (0.453583) | |
| spl (0.429553) | |
| nms (0.427716) | |
| ebs (0.354904) | |
| ton (0.351) | |
| duo (0.345602) | |
| cki (0.330469) | |
| nco (0.323468) | |
| eje (0.296501) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| mas (0.210305) | |
| hea (0.204499) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| cje (0.165235) | |
| cli (0.152812) | |
| nca (0.136874) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |