Non-Coding RNA Search

Ss1.1-Utr1-UTR010031C11.5

Sequence:


               
               CTGACATACCCTCCCTCCTCGCTGGGTCCCCCTGGAGGGAAGAGTGGAAGTGGGTGTGTA
CTCGGTAGCTGGGCGCTGACTGTCCCTTGGAGCCGCTAAGCCACTGCCTCTCCCTTTGAC
CCCACAATGGTGCCCCCCATGCAGGTGGCACCAGGCGCCTCTTGCTGCCCCTCCCACAAG
TTAGCAGGGTCAGTGCTGCCTGTCCCCAGTGCTTCTCATACTTGCCTAGCTGCTGTCACA
CTTTGTTTTATCCTTTTTTCTGGTATTTTTTTGTTTGTTCTTAAATAACCTAAAAACCGG
TGGAGTAGTTTTGCAGGTTGAAGCCATGTCTAAATGAAAGTCCTCAGTAGGTGTTAAAAG
AGACAGGGAGGGGAGATCCTGAAGCTTCCAGCCGAGAGGTCAGGCACTGGGGGCCTGTCC
TGGCTTGAGCAGCTCAGGTGGGCCCCCCGGAGGTGGTATGGGTGGGGCAGGCACAGTGTG
AGGCCCATGGCCTGGAGAGCAGGCAGGGCACGCTAGGGGCTGGTCAGTGTGGACTGGTGG
TTCCGGCATTGTGTGTGTATGCTGCTTTTCTTTTCTAACCAAGAGGCTGGTTTTGGCATC
TGTGTCTGTCTCATTCCCTGGGATCTGGTGGGAGACACGGGGGCTGGAAGCGGGCCATGG
AGGTCAACCTCTTTCAGGCCTGCAGCCTTGGACACTCAAGCCCTACGTTGCCAGCGAACC
CAGGATGTCCAGAACTCATATGGATAGTGGGGAATCAGGTCTGGAAATTTGAAAATAAGG
ATATGAGATGGACCATCCTGCCTCCCTTATAAGAGGAGGAGAGGGGAGACCAGCCTGAGG
GTGGCATGTCCCAGCCAGGCCTGGTCTTGGGATGGCTGCAATGATGAGTCCCGGGAATTG
TATTGACACGAAGATTCTTATTGCACTTGTATTTTTTTGTATTAAAGTTTGCATGGTTTC
TAATAAAGGATTAAAACATAAAAATTTGTAGTGAAATGGCCTGAGAGTCTCCAGGGCTTC
TCCTCTGGAAGAGCATTTTCTGCAGTGCAGACTTGCTGCCAAGGAGGCTGCCACAGACTT
GGCCCCTCACCTTCCCCACCTCAGCTCCCAGTGTCCCTTGGCGCAGAGAAGGTGGGGGCT
TGAACTAGGTTTGATCGATGGCTGTGGCAGGTTCTCTGCATTTCCAGGGTTAGCATTTTC
TTCAGGCAGGTCTGACACCACATCCCCACTTCCCCAGGCATAGACCTGATGCCCCTGGGA
GGGGGTGTCAGGAGACAGTGGGATGACAGTGCCAGGCGTAAAAGTACCTGCTCCCCCCAC
ATTGATCCTGGGGCCAAAGGGATGCTGAGGTGGACAGCAGCCTCTGGATCCTTTTACTCC
TTTGGCCAAGGATGGGGTGGGAGAGGACCCCAGTGGAGAGCTCTCGTGGGGGTGCTGGAG
TGGTCAGTGTTCTGAAAGGTTGTGTGGTCGCAGCTCCCTTGAAGGGTCCCACAAGCCAGA
GAATCTGAGAAGGCAGGTGGGACCAGAGGCCCTGTGTGCTGTGTACTGCTCTGTAGCCAT
TGCGGGTGGGACTTTTCTGTACTTCCCGATTTGCTTATGGCTCAGCCATTACCTGTATCC
ATCTGTGATTCTGTTTAACCATTTTCGGAGTAAATAAAGCTCTTGTGCCCCATAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACATACCCTCCCTCCTCGCTGGGTCCCCCTGGAGGGAAGAGTGGAAGTGGGTGTGTA
CTCGGTAGCTGGGCGCTGACTGTCCCTTGGAGCCGCTAAGCCACTGCCTCTCCCTTTGAC
CCCACAATGGTGCCCCCCATGCAGGTGGCACCAGGCGCCTCTTGCTGCCCCTCCCACAAG
TTAGCAGGGTCAGTGCTGCCTGTCCCCAGTGCTTCTCATACTTGCCTAGCTGCTGTCACA
CTTTGTTTTATCCTTTTTTCTGGTATTTTTTTGTTTGTTCTTAAATAACCTAAAAACCGG
TGGAGTAGTTTTGCAGGTTGAAGCCATGTCTAAATGAAAGTCCTCAGTAGGTGTTAAAAG
AGACAGGGAGGGGAGATCCTGAAGCTTCCAGCCGAGAGGTCAGGCACTGGGGGCCTGTCC
TGGCTTGAGCAGCTCAGGTGGGCCCCCCGGAGGTGGTATGGGTGGGGCAGGCACAGTGTG
AGGCCCATGGCCTGGAGAGCAGGCAGGGCACGCTAGGGGCTGGTCAGTGTGGACTGGTGG
TTCCGGCATTGTGTGTGTATGCTGCTTTTCTTTTCTAACCAAGAGGCTGGTTTTGGCATC
TGTGTCTGTCTCATTCCCTGGGATCTGGTGGGAGACACGGGGGCTGGAAGCGGGCCATGG
AGGTCAACCTCTTTCAGGCCTGCAGCCTTGGACACTCAAGCCCTACGTTGCCAGCGAACC
CAGGATGTCCAGAACTCATATGGATAGTGGGGAATCAGGTCTGGAAATTTGAAAATAAGG
ATATGAGATGGACCATCCTGCCTCCCTTATAAGAGGAGGAGAGGGGAGACCAGCCTGAGG
GTGGCATGTCCCAGCCAGGCCTGGTCTTGGGATGGCTGCAATGATGAGTCCCGGGAATTG
TATTGACACGAAGATTCTTATTGCACTTGTATTTTTTTGTATTAAAGTTTGCATGGTTTC
TAATAAAGGATTAAAACATAAAAATTTGTAGTGAAATGGCCTGAGAGTCTCCAGGGCTTC
TCCTCTGGAAGAGCATTTTCTGCAGTGCAGACTTGCTGCCAAGGAGGCTGCCACAGACTT
GGCCCCTCACCTTCCCCACCTCAGCTCCCAGTGTCCCTTGGCGCAGAGAAGGTGGGGGCT
TGAACTAGGTTTGATCGATGGCTGTGGCAGGTTCTCTGCATTTCCAGGGTTAGCATTTTC
TTCAGGCAGGTCTGACACCACATCCCCACTTCCCCAGGCATAGACCTGATGCCCCTGGGA
GGGGGTGTCAGGAGACAGTGGGATGACAGTGCCAGGCGTAAAAGTACCTGCTCCCCCCAC
ATTGATCCTGGGGCCAAAGGGATGCTGAGGTGGACAGCAGCCTCTGGATCCTTTTACTCC
TTTGGCCAAGGATGGGGTGGGAGAGGACCCCAGTGGAGAGCTCTCGTGGGGGTGCTGGAG
TGGTCAGTGTTCTGAAAGGTTGTGTGGTCGCAGCTCCCTTGAAGGGTCCCACAAGCCAGA
GAATCTGAGAAGGCAGGTGGGACCAGAGGCCCTGTGTGCTGTGTACTGCTCTGTAGCCAT
TGCGGGTGGGACTTTTCTGTACTTCCCGATTTGCTTATGGCTCAGCCATTACCTGTATCC
ATCTGTGATTCTGTTTAACCATTTTCGGAGTAAATAAAGCTCTTGTGCCCCATAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               333-491, + strand, RNAz p=0.998515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-491, + strand, RNAz p=0.998515

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_030884, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030884, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-258, gnl|bosTau2|chr22 (40654897-40654640)
               

               
               1-258, gnl|Hg17|chr3 (47869007-47868740)
               

               
               1-258, gnl|Mm7|chr9 (109779121-109779369)
               


               
               267-1240, gnl|bosTau2|chr22 (40654656-40653672)
               

               
               267-1240, gnl|Hg17|chr3 (47868769-47867763)
               

               
               267-1240, gnl|Mm7|chr9 (109779349-109780307)
               


               
               1341-1670, gnl|bosTau2|chr22 (40653479-40653145)
               

               
               1341-1670, gnl|Hg17|chr3 (47867501-47867194)
               

               
               1341-1670, gnl|Mm7|chr9 (109780506-109780804)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-258, gnl|bosTau2|chr22 (40654897-40654640)
               

               
               1-258, gnl|Hg17|chr3 (47869007-47868740)
               

               
               1-258, gnl|Mm7|chr9 (109779121-109779369)
               


               
               267-1240, gnl|bosTau2|chr22 (40654656-40653672)
               

               
               267-1240, gnl|Hg17|chr3 (47868769-47867763)
               

               
               267-1240, gnl|Mm7|chr9 (109779349-109780307)
               


               
               1341-1670, gnl|bosTau2|chr22 (40653479-40653145)
               

               
               1341-1670, gnl|Hg17|chr3 (47867501-47867194)
               

               
               1341-1670, gnl|Mm7|chr9 (109780506-109780804)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               fhi (0.678311)
               

               
               che (0.545256)
               

               
               cov (0.396458)
               

               
               nlu (0.383362)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.678311)
               

               
               che (0.545256)
               

               
               cov (0.396458)
               

               
               nlu (0.383362)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-258, gnl\|bosTau2\|chr22 (40654897-40654640)
	1-258, gnl\|Hg17\|chr3 (47869007-47868740)
	1-258, gnl\|Mm7\|chr9 (109779121-109779369)

	267-1240, gnl\|bosTau2\|chr22 (40654656-40653672)
	267-1240, gnl\|Hg17\|chr3 (47868769-47867763)
	267-1240, gnl\|Mm7\|chr9 (109779349-109780307)

	1341-1670, gnl\|bosTau2\|chr22 (40653479-40653145)
	1341-1670, gnl\|Hg17\|chr3 (47867501-47867194)
	1341-1670, gnl\|Mm7\|chr9 (109780506-109780804)

	fhi (0.678311)
	che (0.545256)
	cov (0.396458)
	nlu (0.383362)
	cje (0.330469)
	csp (0.322373)
	jca (0.22792)
	nms (0.213858)
	mas (0.210305)
	hea (0.204499)
	jej (0.197844)
	fcc (0.197785)
	aor (0.195274)
	nep (0.183925)
	gul (0.177588)
	ton (0.1755)
	nco (0.161734)
	cag (0.151194)
	fat (0.147427)
	hyp (0.142837)
	pty (0.142714)
	hlv (0.139256)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)
	eje (0.0988338)
	ldo (0.0970026)