Ss1.1-Utr1-UTR010031E02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGGCGGAGGAGATAGGTAGCACGCTTGCGCGGCCGCTTGCGCGGCTGTCACAGGGCT GCTTGGTTGGTCGGGGAGTCGGCGCCTGCGTACTAATAAGACCCGTGTGCAGCAGCAGCG GCGGCGGCGGTAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGGCTCGGAGGCAGCGGTT GGGCTCGCGGCGAGCGGACGGGGTCGAGTCAGTGCGTTCGCGCGAGTTGGAATCGAAGCC TCTTAAAATGGCAGATGATTTGGACTTCGAGACAGGAGATGCAGGGGCCTCAGCCACCTT CCCGATGCAGTGCTCAGCGTTACGTAAGAATGGCTTTGTGGTGCTCAAAGGCCGGCCATG TAAGATTGTGGAGATGTCTACCTCCAAGACTGGCAAGCACGGCCACGCCAAGGTCCATCT GGTTGGTATTGACATCTTTACTGGGAAGAAATATGAAGATATCTGCCCGTCAACTCATAA TATGGATGTCCCCAACATCAAAAGGAATGATTTCCAGCTGATTGGCATCCAGGATGGGTA TCTATCGCTGCTCCAAGACAGCGGGGAGGTGCGAGAGGACCTTCGTCTGCCTGAGGGAGA CCTCGGCAAGGAGATTGAGCAGAAGTACGACTGTGGAGAAGAGATCCTGATCACGGTGCT GTCTGCCATGACAGAGGAGGCAGCTGTTGCAATCAAGGCCATGGCAAAATAACTGGCTCC CAGGGTGGCTGTGGTGGCAGCAGTGATCCTTCAGCCTGCAGAGGCCCTTTCCCCCAGCCT GGCCCAGCTCTGGCTTGGCCCTTGGCTGGACTCCTACATGACTTATTTGACGTTTTATTT TGGTTTCCCTACCCCCTCAATCTGTCGGGGAGCCCCTGCCCTTCACCCTGCTCCCTTGGC CAGGAGTGAGCGAACCATGGCCTTGGCGAAGCTGCCCTCCTCCTCTCCCCTCACACTACA GCCCTGGTGGGGGAGAGGGGGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGGCGGAGGAGATAGGTAGCACGCTTGCGCGGCCGCTTGCGCGGCTGTCACAGGGCT GCTTGGTTGGTCGGGGAGTCGGCGCCTGCGTACTAATAAGACCCGTGTGCAGCAGCAGCG GCGGCGGCGGTAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGGCTCGGAGGCAGCGGTT GGGCTCGCGGCGAGCGGACGGGGTCGAGTCAGTGCGTTCGCGCGAGTTGGAATCGAAGCC TCTTAAAATGGCAGATGATTTGGACTTCGAGACAGGAGATGCAGGGGCCTCAGCCACCTT CCCGATGCAGTGCTCAGCGTTACGTAAGAATGGCTTTGTGGTGCTCAAAGGCCGGCCATG TAAGATTGTGGAGATGTCTACCTCCAAGACTGGCAAGCACGGCCACGCCAAGGTCCATCT GGTTGGTATTGACATCTTTACTGGGAAGAAATATGAAGATATCTGCCCGTCAACTCATAA TATGGATGTCCCCAACATCAAAAGGAATGATTTCCAGCTGATTGGCATCCAGGATGGGTA TCTATCGCTGCTCCAAGACAGCGGGGAGGTGCGAGAGGACCTTCGTCTGCCTGAGGGAGA CCTCGGCAAGGAGATTGAGCAGAAGTACGACTGTGGAGAAGAGATCCTGATCACGGTGCT GTCTGCCATGACAGAGGAGGCAGCTGTTGCAATCAAGGCCATGGCAAAATAACTGGCTCC CAGGGTGGCTGTGGTGGCAGCAGTGATCCTTCAGCCTGCAGAGGCCCTTTCCCCCAGCCT GGCCCAGCTCTGGCTTGGCCCTTGGCTGGACTCCTACATGACTTATTTGACGTTTTATTT TGGTTTCCCTACCCCCTCAATCTGTCGGGGAGCCCCTGCCCTTCACCCTGCTCCCTTGGC CAGGAGTGAGCGAACCATGGCCTTGGCGAAGCTGCCCTCCTCCTCTCCCCTCACACTACA GCCCTGGTGGGGGAGAGGGGGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 516-660, + strand, RNAz p=0.939855 | |
| 757-984, - strand, RNAz p=0.992679 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 516-660, + strand, RNAz p=0.939855 | |
| 757-984, - strand, RNAz p=0.992679 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AY129322, + |
| Aligned organism(s): 83 entry(ies) | More info |
| Aligned organism(s): 83 entry(ies) | Help | Less info |
| 225-414, gnl|bosTau2|chr19 (20559674-20559863) | |
| 225-414, gnl|canFam2|chr5 (35267021-35267207) | |
| 225-414, gnl|canFam2|chr5 (35267022-35267207) | |
| 225-414, gnl|danRer3|chr24 (25444063-25443883) | |
| 225-414, gnl|danRer3|chr24 (25444063-25443883) | |
| 225-414, gnl|dasNov1|scaffold_890 (101910-101727) | |
| 225-414, gnl|dasNov1|scaffold_890 (101909-101727) | |
| 225-414, gnl|echTel1|scaffold_250428 (215-23) | |
| 225-414, gnl|echTel1|scaffold_250428 (214-23) | |
| 225-414, gnl|fr1|chrUn (11670845-11671027) | |
| 225-414, gnl|fr1|chrUn (11670845-11671027) | |
| 225-414, gnl|galGal2|chr9 (19197191-19197379) | |
| 225-414, gnl|hg17|chr10 (80942389-80942579) | |
| 225-414, gnl|Hg17|chr17 (7153656-7153845) | |
| 225-414, gnl|hg17|chr19 (50323644-50323833) | |
| 225-414, gnl|loxAfr1|scaffold_20843 (10230-10059) | |
| 225-414, gnl|loxAfr1|scaffold_20843 (10230-10059) | |
| 225-414, gnl|mm7|chr11 (70000914-70000724) | |
| 225-414, gnl|mm7|chr11 (70000911-70000724) | |
| 225-414, gnl|Mm7|chr11 (70000912-70000723) | |
| 225-414, gnl|monDom2|scaffold_0 (113980914-113980725) | |
| 225-414, gnl|monDom2|scaffold_0 (113980914-113980725) | |
| 225-414, gnl|oryCun1|scaffold_211229 (36416-36226) | |
| 225-414, gnl|oryCun1|scaffold_211229 (36413-36226) | |
| 225-414, gnl|panTro1|chr8 (83383000-83382810) | |
| 225-414, gnl|panTro1|chr8 (83382999-83382810) | |
| 225-414, gnl|rheMac2|chr19 (51556608-51556802) | |
| 225-414, gnl|rheMac2|chr19 (51556609-51556802) | |
| 225-414, gnl|rn3|chr10 (56776506-56776320) | |
| 225-414, gnl|rn3|chr10 (56776503-56776320) | |
| 225-414, gnl|tetNig1|chrUn_random (46591279-46591448) | |
| 225-414, gnl|tetNig1|chrUn_random (46591279-46591448) | |
| 225-414, gnl|xenTro1|scaffold_3 (2333551-2333741) | |
| 225-414, gnl|xenTro1|scaffold_3 (2333560-2333740) | |
| 516-660, gnl|bosTau2|chr19 (20561360-20561503) | |
| 516-660, gnl|canFam2|chr5 (35268456-35268604) | |
| 516-660, gnl|canFam2|chr5 (35268471-35268601) | |
| 516-660, gnl|canFam2|chr5 (35268466-35268596) | |
| 516-660, gnl|danRer3|chr24 (25442826-25442676) | |
| 516-660, gnl|dasNov1|scaffold_890 (101627-101507) | |
| 516-660, gnl|dasNov1|scaffold_890 (101623-101507) | |
| 516-660, gnl|dasNov1|scaffold_890 (101630-101512) | |
| 516-660, gnl|echTel1|scaffold_313956 (114589-114722) | |
| 516-660, gnl|echTel1|scaffold_313956 (114589-114719) | |
| 516-660, gnl|fr1|chrUn (11671694-11671844) | |
| 516-660, gnl|fr1|chrUn (11671711-11671841) | |
| 516-660, gnl|fr1|chrUn (11671714-11671836) | |
| 516-660, gnl|galGal2|chr9 (19198853-19198996) | |
| 516-660, gnl|galGal2|chr9 (19198863-19198993) | |
| 516-660, gnl|hg17|chr10 (80942683-80942813) | |
| 516-660, gnl|hg17|chr17 (7155377-7155527) | |
| 516-660, gnl|Hg17|chr17 (7155391-7155540) | |
| 516-660, gnl|hg17|chr19 (50323930-50324062) | |
| 516-660, gnl|loxAfr1|scaffold_20843 (9958-9865) | |
| 516-660, gnl|loxAfr1|scaffold_20843 (9962-9870) | |
| 516-660, gnl|loxAfr1|scaffold_3947 (8721-8856) | |
| 516-660, gnl|mm7|chr11 (69999319-69999170) | |
| 516-660, gnl|mm7|chr11 (69999303-69999173) | |
| 516-660, gnl|mm7|chr11 (69999310-69999178) | |
| 516-660, gnl|Mm7|chr11 (69999304-69999161) | |
| 516-660, gnl|monDom2|scaffold_0 (113980621-113980491) | |
| 516-660, gnl|monDom2|scaffold_0 (113980628-113980496) | |
| 516-660, gnl|monDom2|scaffold_66 (4247538-4247688) | |
| 516-660, gnl|oryCun1|scaffold_211229 (34894-34744) | |
| 516-660, gnl|oryCun1|scaffold_211229 (34877-34747) | |
| 516-660, gnl|oryCun1|scaffold_211229 (34884-34752) | |
| 516-660, gnl|panTro1|chr19_random (44594416-44594265) | |
| 516-660, gnl|panTro1|chr8 (83382706-83382576) | |
| 516-660, gnl|panTro1|chr8 (83382713-83382581) | |
| 516-660, gnl|rheMac2|chr16 (7046735-7046885) | |
| 516-660, gnl|rheMac2|chr19 (51556906-51557035) | |
| 516-660, gnl|rheMac2|chr19 (51556899-51557030) | |
| 516-660, gnl|rn3|chr10 (56774934-56774784) | |
| 516-660, gnl|rn3|chr10 (56774917-56774787) | |
| 516-660, gnl|rn3|chr10 (56774924-56774792) | |
| 516-660, gnl|tetNig1|chrUn_random (46591718-46591864) | |
| 516-660, gnl|tetNig1|chrUn_random (46591731-46591861) | |
| 516-660, gnl|tetNig1|chrUn_random (46591734-46591856) | |
| 516-660, gnl|xenTro1|scaffold_3 (2337026-2337176) | |
| 516-660, gnl|xenTro1|scaffold_3 (2337043-2337173) | |
| 719-984, gnl|bosTau2|chr19 (20561815-20562095) | |
| 719-984, gnl|Hg17|chr17 (7155860-7156132) | |
| 719-984, gnl|Mm7|chr11 (69998920-69998661) |
| Aligned organism(s): 83 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 225-414, gnl|bosTau2|chr19 (20559674-20559863) | |
| 225-414, gnl|canFam2|chr5 (35267021-35267207) | |
| 225-414, gnl|canFam2|chr5 (35267022-35267207) | |
| 225-414, gnl|danRer3|chr24 (25444063-25443883) | |
| 225-414, gnl|danRer3|chr24 (25444063-25443883) | |
| 225-414, gnl|dasNov1|scaffold_890 (101910-101727) | |
| 225-414, gnl|dasNov1|scaffold_890 (101909-101727) | |
| 225-414, gnl|echTel1|scaffold_250428 (215-23) | |
| 225-414, gnl|echTel1|scaffold_250428 (214-23) | |
| 225-414, gnl|fr1|chrUn (11670845-11671027) | |
| 225-414, gnl|fr1|chrUn (11670845-11671027) | |
| 225-414, gnl|galGal2|chr9 (19197191-19197379) | |
| 225-414, gnl|hg17|chr10 (80942389-80942579) | |
| 225-414, gnl|Hg17|chr17 (7153656-7153845) | |
| 225-414, gnl|hg17|chr19 (50323644-50323833) | |
| 225-414, gnl|loxAfr1|scaffold_20843 (10230-10059) | |
| 225-414, gnl|loxAfr1|scaffold_20843 (10230-10059) | |
| 225-414, gnl|mm7|chr11 (70000914-70000724) | |
| 225-414, gnl|mm7|chr11 (70000911-70000724) | |
| 225-414, gnl|Mm7|chr11 (70000912-70000723) | |
| 225-414, gnl|monDom2|scaffold_0 (113980914-113980725) | |
| 225-414, gnl|monDom2|scaffold_0 (113980914-113980725) | |
| 225-414, gnl|oryCun1|scaffold_211229 (36416-36226) | |
| 225-414, gnl|oryCun1|scaffold_211229 (36413-36226) | |
| 225-414, gnl|panTro1|chr8 (83383000-83382810) | |
| 225-414, gnl|panTro1|chr8 (83382999-83382810) | |
| 225-414, gnl|rheMac2|chr19 (51556608-51556802) | |
| 225-414, gnl|rheMac2|chr19 (51556609-51556802) | |
| 225-414, gnl|rn3|chr10 (56776506-56776320) | |
| 225-414, gnl|rn3|chr10 (56776503-56776320) | |
| 225-414, gnl|tetNig1|chrUn_random (46591279-46591448) | |
| 225-414, gnl|tetNig1|chrUn_random (46591279-46591448) | |
| 225-414, gnl|xenTro1|scaffold_3 (2333551-2333741) | |
| 225-414, gnl|xenTro1|scaffold_3 (2333560-2333740) | |
| 516-660, gnl|bosTau2|chr19 (20561360-20561503) | |
| 516-660, gnl|canFam2|chr5 (35268456-35268604) | |
| 516-660, gnl|canFam2|chr5 (35268471-35268601) | |
| 516-660, gnl|canFam2|chr5 (35268466-35268596) | |
| 516-660, gnl|danRer3|chr24 (25442826-25442676) | |
| 516-660, gnl|dasNov1|scaffold_890 (101627-101507) | |
| 516-660, gnl|dasNov1|scaffold_890 (101623-101507) | |
| 516-660, gnl|dasNov1|scaffold_890 (101630-101512) | |
| 516-660, gnl|echTel1|scaffold_313956 (114589-114722) | |
| 516-660, gnl|echTel1|scaffold_313956 (114589-114719) | |
| 516-660, gnl|fr1|chrUn (11671694-11671844) | |
| 516-660, gnl|fr1|chrUn (11671711-11671841) | |
| 516-660, gnl|fr1|chrUn (11671714-11671836) | |
| 516-660, gnl|galGal2|chr9 (19198853-19198996) | |
| 516-660, gnl|galGal2|chr9 (19198863-19198993) | |
| 516-660, gnl|hg17|chr10 (80942683-80942813) | |
| 516-660, gnl|hg17|chr17 (7155377-7155527) | |
| 516-660, gnl|Hg17|chr17 (7155391-7155540) | |
| 516-660, gnl|hg17|chr19 (50323930-50324062) | |
| 516-660, gnl|loxAfr1|scaffold_20843 (9958-9865) | |
| 516-660, gnl|loxAfr1|scaffold_20843 (9962-9870) | |
| 516-660, gnl|loxAfr1|scaffold_3947 (8721-8856) | |
| 516-660, gnl|mm7|chr11 (69999319-69999170) | |
| 516-660, gnl|mm7|chr11 (69999303-69999173) | |
| 516-660, gnl|mm7|chr11 (69999310-69999178) | |
| 516-660, gnl|Mm7|chr11 (69999304-69999161) | |
| 516-660, gnl|monDom2|scaffold_0 (113980621-113980491) | |
| 516-660, gnl|monDom2|scaffold_0 (113980628-113980496) | |
| 516-660, gnl|monDom2|scaffold_66 (4247538-4247688) | |
| 516-660, gnl|oryCun1|scaffold_211229 (34894-34744) | |
| 516-660, gnl|oryCun1|scaffold_211229 (34877-34747) | |
| 516-660, gnl|oryCun1|scaffold_211229 (34884-34752) | |
| 516-660, gnl|panTro1|chr19_random (44594416-44594265) | |
| 516-660, gnl|panTro1|chr8 (83382706-83382576) | |
| 516-660, gnl|panTro1|chr8 (83382713-83382581) | |
| 516-660, gnl|rheMac2|chr16 (7046735-7046885) | |
| 516-660, gnl|rheMac2|chr19 (51556906-51557035) | |
| 516-660, gnl|rheMac2|chr19 (51556899-51557030) | |
| 516-660, gnl|rn3|chr10 (56774934-56774784) | |
| 516-660, gnl|rn3|chr10 (56774917-56774787) | |
| 516-660, gnl|rn3|chr10 (56774924-56774792) | |
| 516-660, gnl|tetNig1|chrUn_random (46591718-46591864) | |
| 516-660, gnl|tetNig1|chrUn_random (46591731-46591861) | |
| 516-660, gnl|tetNig1|chrUn_random (46591734-46591856) | |
| 516-660, gnl|xenTro1|scaffold_3 (2337026-2337176) | |
| 516-660, gnl|xenTro1|scaffold_3 (2337043-2337173) | |
| 719-984, gnl|bosTau2|chr19 (20561815-20562095) | |
| 719-984, gnl|Hg17|chr17 (7155860-7156132) | |
| 719-984, gnl|Mm7|chr11 (69998920-69998661) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| mcp (0.341297) | |
| nco (0.161734) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.341297) | |
| nco (0.161734) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| cty (0.10408) |