Non-Coding RNA Search

Ss1.1-Utr1-UTR010031E07.5

Sequence:


               
               ACAACTCAGCAAAATAAAATTCCGGTTTATTGTTGGACAACATTGTTTCACACATACATC
AAACAGGCCAAAAAAAAATAAACAGCAACTTCATAGACAAAAAAAAGGAAAAAAAAGAAA
CCTTTTATCTTTGGCCTTTTTAACCATCTCATACAAACCAACTACTTATAGTACAGCTAA
GTACATACACAAAAAAAGTTATTGGAATGCTCGGAATAAGATTGTTTTTTTTTTTGTTGT
GGTTTTTGCTTTTTTTACAAGGTTTTTTTTCTCCTTTGAGATTATAATGAACATGGTCAC
ACCACAAGTAAAGTCAGAAGTAGGACAGAGAACGCTCCGAAGGCTGGTTTGGTCATCCGA
GATCATTAAAAATGGCTGACCCCTAACAATATGTACAAAAATATAAAATGTAAATAAAAA
ATACAAACAAATTTTCCTTTTTAAAGTACTTTAAGAAAAAAAGCAGGGCCTTGGAAGTTT
TGGTTCTTTCTTTCCTTCCCTGTGGCAAATTCACGTTGTGGTTTTGGTGGGGTGGTGGAG
AGCGCACGTCATCTGCGGGTGGCGCTGCCCGCGGTGGGCGGGCGGGCAGGCGACTCTCTA
CTCGAAGGTGACCACGTTTAGGATTCTTCTGAGACGGGAAGTGGAGGGTGAATAGGTCAC
GGTGGCCTTTTTTTTTTTTTTTTTTCTGTTAAGTTTTAGCTTTTCCTTTTTTGCTGTCTA
GTCATCCTCATCGGTCTTCTGCTTCTTGGTGTCCACATCGTCGTCCTCATCATCTTCAGC
TGCCCGTTTGCCTGTAGCTGCCTCAGCCTCCTCATCTTCATCTCCATCCTCTTCCTCACC
ATCACCTTCCTCCTCCTCCTCCTCTTCCTCCCCACCTTCTTCCTCTTCTTCATCTACCTC
ATTGTCAGCCTCCTGCTCCCCATTTTCCTCATTAGCATTGCCATTAGCAGGGGCCTCTCT
CCCATTCTCCGCCTCCTCCACGACTTCCTTCTTCTCTTTTAAGTCCTTGGTGGTGATCTC
GGAGCTGGTGTCCACGGCCGCGTCTGACATGATGGGGCACGCCGGTGATCCGATGCAGCG
GATAAAAAAGGAAGCGGGAGTCCAAGGACTCTGGCGACAAAGCTGCCGGAGTCCGCGGCG
GCAGAAGAGGCGCGCGGCGGAGGCGGCTGCGGCGAGCGGAGAGCCGGGCACGGGAACAAT
GCAAAGATGGCTTTTCAGACCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACTCAGCAAAATAAAATTCCGGTTTATTGTTGGACAACATTGTTTCACACATACATC
AAACAGGCCAAAAAAAAATAAACAGCAACTTCATAGACAAAAAAAAGGAAAAAAAAGAAA
CCTTTTATCTTTGGCCTTTTTAACCATCTCATACAAACCAACTACTTATAGTACAGCTAA
GTACATACACAAAAAAAGTTATTGGAATGCTCGGAATAAGATTGTTTTTTTTTTTGTTGT
GGTTTTTGCTTTTTTTACAAGGTTTTTTTTCTCCTTTGAGATTATAATGAACATGGTCAC
ACCACAAGTAAAGTCAGAAGTAGGACAGAGAACGCTCCGAAGGCTGGTTTGGTCATCCGA
GATCATTAAAAATGGCTGACCCCTAACAATATGTACAAAAATATAAAATGTAAATAAAAA
ATACAAACAAATTTTCCTTTTTAAAGTACTTTAAGAAAAAAAGCAGGGCCTTGGAAGTTT
TGGTTCTTTCTTTCCTTCCCTGTGGCAAATTCACGTTGTGGTTTTGGTGGGGTGGTGGAG
AGCGCACGTCATCTGCGGGTGGCGCTGCCCGCGGTGGGCGGGCGGGCAGGCGACTCTCTA
CTCGAAGGTGACCACGTTTAGGATTCTTCTGAGACGGGAAGTGGAGGGTGAATAGGTCAC
GGTGGCCTTTTTTTTTTTTTTTTTTCTGTTAAGTTTTAGCTTTTCCTTTTTTGCTGTCTA
GTCATCCTCATCGGTCTTCTGCTTCTTGGTGTCCACATCGTCGTCCTCATCATCTTCAGC
TGCCCGTTTGCCTGTAGCTGCCTCAGCCTCCTCATCTTCATCTCCATCCTCTTCCTCACC
ATCACCTTCCTCCTCCTCCTCCTCTTCCTCCCCACCTTCTTCCTCTTCTTCATCTACCTC
ATTGTCAGCCTCCTGCTCCCCATTTTCCTCATTAGCATTGCCATTAGCAGGGGCCTCTCT
CCCATTCTCCGCCTCCTCCACGACTTCCTTCTTCTCTTTTAAGTCCTTGGTGGTGATCTC
GGAGCTGGTGTCCACGGCCGCGTCTGACATGATGGGGCACGCCGGTGATCCGATGCAGCG
GATAAAAAAGGAAGCGGGAGTCCAAGGACTCTGGCGACAAAGCTGCCGGAGTCCGCGGCG
GCAGAAGAGGCGCGCGGCGGAGGCGGCTGCGGCGAGCGGAGAGCCGGGCACGGGAACAAT
GCAAAGATGGCTTTTCAGACCAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               PTMA_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PTMA_BOVIN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-157, - strand, RNAz p=0.97457
               

               
               1044-1161, + strand, RNAz p=0.56898

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, - strand, RNAz p=0.97457
               

               
               1044-1161, + strand, RNAz p=0.56898

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               1-481, gnl|bosTau2|chr11 (21336954-21337429)
               

               
               1-481, gnl|Hg17|chr5 (118338397-118337926)
               

               
               1-481, gnl|Mm7|chr14 (6610578-6611056)
               


               
               690-909, gnl|bosTau2|chr7 (18645780-18645568)
               


               
               1005-1224, gnl|bosTau2|chr2 (73832182-73832403)
               

               
               1005-1224, gnl|Hg17|chr2 (232398967-232398749)
               

               
               1005-1224, gnl|Mm7|chr1 (86427627-86427406)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chr11 (21336954-21337429)
               

               
               1-481, gnl|Hg17|chr5 (118338397-118337926)
               

               
               1-481, gnl|Mm7|chr14 (6610578-6611056)
               


               
               690-909, gnl|bosTau2|chr7 (18645780-18645568)
               


               
               1005-1224, gnl|bosTau2|chr2 (73832182-73832403)
               

               
               1005-1224, gnl|Hg17|chr2 (232398967-232398749)
               

               
               1005-1224, gnl|Mm7|chr1 (86427627-86427406)

Expressed library(ies): 93 entry(ies)

More info

Expressed library(ies): 93 entry(ies)

Help | Less info


               
               cut (9.68564)
               

               
               thg (8.49499)
               

               
               cst (8.40218)
               

               
               cki (7.93126)
               

               
               ova (7.2314)
               

               
               cje (6.27892)
               

               
               bla (5.71997)
               

               
               rec (5.36518)
               

               
               csk (5.34835)
               

               
               cmu (4.10065)
               

               
               fty (4.04431)
               

               
               med (3.95257)
               

               
               sin (3.324)
               

               
               sto (3.23683)
               

               
               che (3.13522)
               

               
               pro (3.0722)
               

               
               nlu (2.87522)
               

               
               elu (2.6975)
               

               
               ski (2.4945)
               

               
               gul (2.30865)
               

               
               mgp (2.30681)
               

               
               ill (2.2827)
               

               
               fce (2.17273)
               

               
               jca (2.16524)
               

               
               col (2.14509)
               

               
               ebs (2.12942)
               

               
               ece (2.06375)
               

               
               pgl (2.01422)
               

               
               eje (1.97668)
               

               
               eep (1.96102)
               

               
               nco (1.94081)
               

               
               cly (1.93027)
               

               
               nca (1.91623)
               

               
               cag (1.66314)
               

               
               nep (1.65532)
               

               
               ste (1.6225)
               

               
               ecc (1.61049)
               

               
               tra (1.6002)
               

               
               nmm (1.59363)
               

               
               lnt (1.56539)
               

               
               aor (1.56219)
               

               
               mcp (1.53584)
               

               
               eye (1.53453)
               

               
               sug (1.52749)
               

               
               spc (1.47376)
               

               
               lin (1.45603)
               

               
               csp (1.45068)
               

               
               jej (1.28598)
               

               
               eru (1.20048)
               

               
               fat (1.17942)
               

               
               kid (1.16762)
               

               
               nje (1.16144)
               

               
               ese (1.13852)
               

               
               lun (1.05342)
               

               
               fbs (1.05208)
               

               
               tes (1.03907)
               

               
               pty (0.999001)
               

               
               nbm (0.993246)
               

               
               mga (0.96123)
               

               
               clu (0.957167)
               

               
               fhi (0.847889)
               

               
               cov (0.792917)
               

               
               eli (0.759071)
               

               
               spl (0.715922)
               

               
               ton (0.702001)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               isp (0.601504)
               

               
               fcc (0.593354)
               

               
               ldo (0.582016)
               

               
               hyp (0.571347)
               

               
               sag (0.548145)
               

               
               ssp (0.542079)
               

               
               ute (0.531138)
               

               
               duo (0.518403)
               

               
               ret (0.514933)
               

               
               cbe (0.478469)
               

               
               pan (0.471921)
               

               
               cli (0.458435)
               

               
               liv (0.438853)
               

               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               fli (0.405762)
               

               
               lyg (0.399308)
               

               
               mgm (0.360685)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)

Expressed library(ies): 93 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (9.68564)
               

               
               thg (8.49499)
               

               
               cst (8.40218)
               

               
               cki (7.93126)
               

               
               ova (7.2314)
               

               
               cje (6.27892)
               

               
               bla (5.71997)
               

               
               rec (5.36518)
               

               
               csk (5.34835)
               

               
               cmu (4.10065)
               

               
               fty (4.04431)
               

               
               med (3.95257)
               

               
               sin (3.324)
               

               
               sto (3.23683)
               

               
               che (3.13522)
               

               
               pro (3.0722)
               

               
               nlu (2.87522)
               

               
               elu (2.6975)
               

               
               ski (2.4945)
               

               
               gul (2.30865)
               

               
               mgp (2.30681)
               

               
               ill (2.2827)
               

               
               fce (2.17273)
               

               
               jca (2.16524)
               

               
               col (2.14509)
               

               
               ebs (2.12942)
               

               
               ece (2.06375)
               

               
               pgl (2.01422)
               

               
               eje (1.97668)
               

               
               eep (1.96102)
               

               
               nco (1.94081)
               

               
               cly (1.93027)
               

               
               nca (1.91623)
               

               
               cag (1.66314)
               

               
               nep (1.65532)
               

               
               ste (1.6225)
               

               
               ecc (1.61049)
               

               
               tra (1.6002)
               

               
               nmm (1.59363)
               

               
               lnt (1.56539)
               

               
               aor (1.56219)
               

               
               mcp (1.53584)
               

               
               eye (1.53453)
               

               
               sug (1.52749)
               

               
               spc (1.47376)
               

               
               lin (1.45603)
               

               
               csp (1.45068)
               

               
               jej (1.28598)
               

               
               eru (1.20048)
               

               
               fat (1.17942)
               

               
               kid (1.16762)
               

               
               nje (1.16144)
               

               
               ese (1.13852)
               

               
               lun (1.05342)
               

               
               fbs (1.05208)
               

               
               tes (1.03907)
               

               
               pty (0.999001)
               

               
               nbm (0.993246)
               

               
               mga (0.96123)
               

               
               clu (0.957167)
               

               
               fhi (0.847889)
               

               
               cov (0.792917)
               

               
               eli (0.759071)
               

               
               spl (0.715922)
               

               
               ton (0.702001)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               isp (0.601504)
               

               
               fcc (0.593354)
               

               
               ldo (0.582016)
               

               
               hyp (0.571347)
               

               
               sag (0.548145)
               

               
               ssp (0.542079)
               

               
               ute (0.531138)
               

               
               duo (0.518403)
               

               
               ret (0.514933)
               

               
               cbe (0.478469)
               

               
               pan (0.471921)
               

               
               cli (0.458435)
               

               
               liv (0.438853)
               

               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               fli (0.405762)
               

               
               lyg (0.399308)
               

               
               mgm (0.360685)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)

	40-157, - strand, RNAz p=0.97457
	1044-1161, + strand, RNAz p=0.56898

	1-481, gnl\|bosTau2\|chr11 (21336954-21337429)
	1-481, gnl\|Hg17\|chr5 (118338397-118337926)
	1-481, gnl\|Mm7\|chr14 (6610578-6611056)

	690-909, gnl\|bosTau2\|chr7 (18645780-18645568)

	1005-1224, gnl\|bosTau2\|chr2 (73832182-73832403)
	1005-1224, gnl\|Hg17\|chr2 (232398967-232398749)
	1005-1224, gnl\|Mm7\|chr1 (86427627-86427406)

	cut (9.68564)
	thg (8.49499)
	cst (8.40218)
	cki (7.93126)
	ova (7.2314)
	cje (6.27892)
	bla (5.71997)
	rec (5.36518)
	csk (5.34835)
	cmu (4.10065)
	fty (4.04431)
	med (3.95257)
	sin (3.324)
	sto (3.23683)
	che (3.13522)
	pro (3.0722)
	nlu (2.87522)
	elu (2.6975)
	ski (2.4945)
	gul (2.30865)
	mgp (2.30681)
	ill (2.2827)
	fce (2.17273)
	jca (2.16524)
	col (2.14509)
	ebs (2.12942)
	ece (2.06375)
	pgl (2.01422)
	eje (1.97668)
	eep (1.96102)
	nco (1.94081)
	cly (1.93027)
	nca (1.91623)
	cag (1.66314)
	nep (1.65532)
	ste (1.6225)
	ecc (1.61049)
	tra (1.6002)
	nmm (1.59363)
	lnt (1.56539)
	aor (1.56219)
	mcp (1.53584)
	eye (1.53453)
	sug (1.52749)
	spc (1.47376)
	lin (1.45603)
	csp (1.45068)
	jej (1.28598)
	eru (1.20048)
	fat (1.17942)
	kid (1.16762)
	nje (1.16144)
	ese (1.13852)
	lun (1.05342)
	fbs (1.05208)
	tes (1.03907)
	pty (0.999001)
	nbm (0.993246)
	mga (0.96123)
	clu (0.957167)
	fhi (0.847889)
	cov (0.792917)
	eli (0.759071)
	spl (0.715922)
	ton (0.702001)
	hea (0.613497)
	sme (0.610874)
	isp (0.601504)
	fcc (0.593354)
	ldo (0.582016)
	hyp (0.571347)
	sag (0.548145)
	ssp (0.542079)
	ute (0.531138)
	duo (0.518403)
	ret (0.514933)
	cbe (0.478469)
	pan (0.471921)
	cli (0.458435)
	liv (0.438853)
	nms (0.427716)
	mas (0.42061)
	amn (0.417711)
	cty (0.41632)
	fli (0.405762)
	lyg (0.399308)
	mgm (0.360685)
	fco (0.314416)
	cte (0.29274)
	hlv (0.278513)
	pla (0.267344)
	tbr (0.154178)
	bfe (0.149858)