Non-Coding RNA Search

Ss1.1-Utr1-UTR010031H02.5

Sequence:


               
               CAGAAACTGTGGCGAACACCACATTCGGGGGTGGTTTACCTCCTCATATGTAACAGTATT
CTCACATTGCTCTGTGCATTTCCAGTGAATTACACAATAAAGACGGGTCGCTTTTAAGGG
AGATGTCTGAAAAACTGAGAAGATGCAGAAAGGAGCTGACTGCGGCCATTGACCGGGCCT
TTGAAGGGGTCAGTCATTCCCAGGAGTGCTCAGGCCCGCTGAGGCTGGAGCTGGACGCGG
TGCGACTTCCCTTCCCCCTCCCCGTGCACCGGCTCCTCTGCAGGAGGAAACCGCTGGCAG
CCTGCTCCTCTGTGGCTCCTTTCTCTCCTGTCCCTTGTGACCCTGAGAATGAGAGCCCTG
TCTTTGCACCAAACCCTGCTCCTGTGACTGCAAAGCCGCAGGCTCTATGTCCCCAAAGAA
AACCTCTGACCAGCAAGGAAAACATACTGATGCATTCCTCCATTTTGGCACCTGAAAGAC
AGCTTTGGAGAGCAGTAGGAGATGGGGAGAACTGGAGAAAAGACTGTTTAAGGAAAGATA
TGGAGAAATATTTGAAGGTTGACTCAAACATGCCACTCAGCAGTTCTAGCCAAGAGGTCA
CACAGGATCTGCTTGATATGATTGACCATACAAGCATCCGAACTATTGAAGAATTGGCTG
GAAAACTAGAATTTGAAAACGAGCTGAACCGTGTGTGTGGTCACTGCGAAGATTCTCCCT
TTAAGGAGGAAGCCTGGGCCCTGCTGGTGGATGAGAGCCCTCAGAAGGCCTCAGATGCGG
ACCCTGGCAGCCTCAAGCAGGCTTTCGAGGACCACAATATCGTGGAGACAGTTCTGGACC
TGGAAGAGGACTACAATTTGATGACCTCTTTTAAATACCAAATTGAGTAAGGACAGTTGA
CTTCAGCTTTGATCTTTACAGCAGGAGGCTGACTTAGAGCGTCTGTGCCTGGCATTCACA
GTTGTCATTGGTGCCACATTCTTCAAAGGCTTGCCAAAATCTGAATTACCCCAGCCTTTT
AAATTTCTAGTTGTGTCCCTTTTTAAGCTGAGAGCCCCATTTTTTTTTTTTTTGTTCTTT
TTTGTTCTGTTGCTTTGAAATGTTTCTTTGTTTTTTTCCTTTACTTTTTTTGATATCTTG
ACTGTTTTTTTTAATTGTTATTCAATATACCCAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAACTGTGGCGAACACCACATTCGGGGGTGGTTTACCTCCTCATATGTAACAGTATT
CTCACATTGCTCTGTGCATTTCCAGTGAATTACACAATAAAGACGGGTCGCTTTTAAGGG
AGATGTCTGAAAAACTGAGAAGATGCAGAAAGGAGCTGACTGCGGCCATTGACCGGGCCT
TTGAAGGGGTCAGTCATTCCCAGGAGTGCTCAGGCCCGCTGAGGCTGGAGCTGGACGCGG
TGCGACTTCCCTTCCCCCTCCCCGTGCACCGGCTCCTCTGCAGGAGGAAACCGCTGGCAG
CCTGCTCCTCTGTGGCTCCTTTCTCTCCTGTCCCTTGTGACCCTGAGAATGAGAGCCCTG
TCTTTGCACCAAACCCTGCTCCTGTGACTGCAAAGCCGCAGGCTCTATGTCCCCAAAGAA
AACCTCTGACCAGCAAGGAAAACATACTGATGCATTCCTCCATTTTGGCACCTGAAAGAC
AGCTTTGGAGAGCAGTAGGAGATGGGGAGAACTGGAGAAAAGACTGTTTAAGGAAAGATA
TGGAGAAATATTTGAAGGTTGACTCAAACATGCCACTCAGCAGTTCTAGCCAAGAGGTCA
CACAGGATCTGCTTGATATGATTGACCATACAAGCATCCGAACTATTGAAGAATTGGCTG
GAAAACTAGAATTTGAAAACGAGCTGAACCGTGTGTGTGGTCACTGCGAAGATTCTCCCT
TTAAGGAGGAAGCCTGGGCCCTGCTGGTGGATGAGAGCCCTCAGAAGGCCTCAGATGCGG
ACCCTGGCAGCCTCAAGCAGGCTTTCGAGGACCACAATATCGTGGAGACAGTTCTGGACC
TGGAAGAGGACTACAATTTGATGACCTCTTTTAAATACCAAATTGAGTAAGGACAGTTGA
CTTCAGCTTTGATCTTTACAGCAGGAGGCTGACTTAGAGCGTCTGTGCCTGGCATTCACA
GTTGTCATTGGTGCCACATTCTTCAAAGGCTTGCCAAAATCTGAATTACCCCAGCCTTTT
AAATTTCTAGTTGTGTCCCTTTTTAAGCTGAGAGCCCCATTTTTTTTTTTTTTGTTCTTT
TTTGTTCTGTTGCTTTGAAATGTTTCTTTGTTTTTTTCCTTTACTTTTTTTGATATCTTG
ACTGTTTTTTTTAATTGTTATTCAATATACCCAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866830|ref|XP_584766.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866830|ref|XP_584766.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               703-822, - strand, RNAz p=0.593874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               703-822, - strand, RNAz p=0.593874

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-533, gnl|bosTau2|chr22 (37749917-37749387)
               

               
               3-533, gnl|Hg17|chr3 (49289380-49288863)
               

               
               3-533, gnl|Mm7|chr9 (108126502-108127054)
               


               
               624-1176, gnl|bosTau2|chr22 (37747175-37746631)
               

               
               624-1176, gnl|Hg17|chr3 (49283883-49283340)
               

               
               624-1176, gnl|Mm7|chr9 (108130606-108131091)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-533, gnl|bosTau2|chr22 (37749917-37749387)
               

               
               3-533, gnl|Hg17|chr3 (49289380-49288863)
               

               
               3-533, gnl|Mm7|chr9 (108126502-108127054)
               


               
               624-1176, gnl|bosTau2|chr22 (37747175-37746631)
               

               
               624-1176, gnl|Hg17|chr3 (49283883-49283340)
               

               
               624-1176, gnl|Mm7|chr9 (108130606-108131091)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ute (0.132784)

	3-533, gnl\|bosTau2\|chr22 (37749917-37749387)
	3-533, gnl\|Hg17\|chr3 (49289380-49288863)
	3-533, gnl\|Mm7\|chr9 (108126502-108127054)

	624-1176, gnl\|bosTau2\|chr22 (37747175-37746631)
	624-1176, gnl\|Hg17\|chr3 (49283883-49283340)
	624-1176, gnl\|Mm7\|chr9 (108130606-108131091)