Non-Coding RNA Search

Ss1.1-Utr1-UTR010031H09.5

Sequence:


               
               AGTGCTCCACGACAGCCAGTATGGAGGCCGGCAGGACAGCGGTGCTCCGAGTGAAGCGGA
AGCGCAGCGCAGAACCAGCTGAGGCACTTGTCCTCGCTTGTAAACGCCTCCGCTCCAGCG
CAGTTGAGTCGGGAGTCCAAAAGACGCCTCCGGATGGTCTGGAGAGTGCAGCAGAAAATA
ATGTCTTCCAGTTGGTGGCCACTTTGCGCTCCCAGGAGGAGCCAGTCCAGCCTCTCCTGC
GGGCGGCCCTGCGCCCATCCCAGAGCAGCCAGCAGCGCATCCGCAGTCATCTCCGCGCGT
CTGCTCAGGAGATGCGGCAGGAGGGCCGCTACAGAGTAGTCTCTAGCCACCGATCTTCGG
GGATTCCCTCGGGTGGCTTGGAATCCGAAGACGCGCCGGGAAGCCCAGAGGCCACGGCTG
AGGACGCAGGCTTCCAGCTGTTGGACCTGGTCCGTGAGGAAGAAGACCCAGAAGCCGCGA
ACGCCACAATCTCCCGCAAAACATCTGACCCAGATGTGATCCTCTGCAATTCTGTGGAAT
TGATCCGTGAGCGGTTGACTATATCAGAAGATGGACCAAAAGTTGAGCACCAGGAGGAAC
AGAAGGATGACTATGTGTATGACATTTACTATTTGGACATGGCCACTCCAGGATGGATTG
AGAACATCCTCTCTGTCCAGCCCTACAGCCAGGAGTGGGAGTTGGTGAATGATGACCAAC
AACCAGAGGACATTTATGAAGATGAAGATGACGAAAACAGTGAAAATAATTGGCGCAATG
AGTATCCGGAGGAGGAAAACAGTGATGGAGATGAAGATTCTAGAGGTTCTGATGATTACA
ACAGCCTCAGTGAAGAAGAAAGAGACAACAGCAGCCCACAGAGATGGAGCAAATACCCTT
TGGATGTGCAGAAGGAGTTTGGCTACGATGGCCCCCATGACCTGGATTCAGACTGATGAT
CTTGTGATAGCCATGAGGTTCTACCACAAGCCCTTGAGGGTTCTGTGACTGCAGCGTCAG
CCACACTAGTAACATCCTCTCGGGTTTCCTGGCTTACCTTGTGGAAGGACAAAGCATATC
CAACAGCACCATTCCACCGTGGTGAAAACTTGCACTAAGGGAGTGTGTCTTTTCTACTAA
CTGTAGCGCCCCTTGTCTCAATCAAGTGATCCTACAGCCCAGGAGGAAATGCTATGCAAG
TGAAGCTTCCTGGCCCAGGCATTTTCCTGGCATTCCCATTCTCCTCCTACCCTGAAGCCA
GTAAGTGGAATAGAGTCTCCTGTTTTATCAGCACTAAGACAGGGCTTTCCCAGGCGACCT
GCCTCCAGTAAAAGCCTGCTCCTTTTGATAGACTTTGGAAGGGCTTTAGTAGGTCTCTTG
TAGCAGCACAAACTAGATAGCAATGGTCATTAGGAAAGGAATTAGGATCCACGTGAGGTA
TGAGAGGCTTTAGTTAATGGCTATCTCTACCTCCCTGCTTCCTGACTCTGACAATGGTTG
TAAAGATTGCTGTTTTCCTCTGGCAACAATGCCAAGGAACAGTATGTATGAATGTCTTTA
ATAAAAACTAACTTTGAACACAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCTCCACGACAGCCAGTATGGAGGCCGGCAGGACAGCGGTGCTCCGAGTGAAGCGGA
AGCGCAGCGCAGAACCAGCTGAGGCACTTGTCCTCGCTTGTAAACGCCTCCGCTCCAGCG
CAGTTGAGTCGGGAGTCCAAAAGACGCCTCCGGATGGTCTGGAGAGTGCAGCAGAAAATA
ATGTCTTCCAGTTGGTGGCCACTTTGCGCTCCCAGGAGGAGCCAGTCCAGCCTCTCCTGC
GGGCGGCCCTGCGCCCATCCCAGAGCAGCCAGCAGCGCATCCGCAGTCATCTCCGCGCGT
CTGCTCAGGAGATGCGGCAGGAGGGCCGCTACAGAGTAGTCTCTAGCCACCGATCTTCGG
GGATTCCCTCGGGTGGCTTGGAATCCGAAGACGCGCCGGGAAGCCCAGAGGCCACGGCTG
AGGACGCAGGCTTCCAGCTGTTGGACCTGGTCCGTGAGGAAGAAGACCCAGAAGCCGCGA
ACGCCACAATCTCCCGCAAAACATCTGACCCAGATGTGATCCTCTGCAATTCTGTGGAAT
TGATCCGTGAGCGGTTGACTATATCAGAAGATGGACCAAAAGTTGAGCACCAGGAGGAAC
AGAAGGATGACTATGTGTATGACATTTACTATTTGGACATGGCCACTCCAGGATGGATTG
AGAACATCCTCTCTGTCCAGCCCTACAGCCAGGAGTGGGAGTTGGTGAATGATGACCAAC
AACCAGAGGACATTTATGAAGATGAAGATGACGAAAACAGTGAAAATAATTGGCGCAATG
AGTATCCGGAGGAGGAAAACAGTGATGGAGATGAAGATTCTAGAGGTTCTGATGATTACA
ACAGCCTCAGTGAAGAAGAAAGAGACAACAGCAGCCCACAGAGATGGAGCAAATACCCTT
TGGATGTGCAGAAGGAGTTTGGCTACGATGGCCCCCATGACCTGGATTCAGACTGATGAT
CTTGTGATAGCCATGAGGTTCTACCACAAGCCCTTGAGGGTTCTGTGACTGCAGCGTCAG
CCACACTAGTAACATCCTCTCGGGTTTCCTGGCTTACCTTGTGGAAGGACAAAGCATATC
CAACAGCACCATTCCACCGTGGTGAAAACTTGCACTAAGGGAGTGTGTCTTTTCTACTAA
CTGTAGCGCCCCTTGTCTCAATCAAGTGATCCTACAGCCCAGGAGGAAATGCTATGCAAG
TGAAGCTTCCTGGCCCAGGCATTTTCCTGGCATTCCCATTCTCCTCCTACCCTGAAGCCA
GTAAGTGGAATAGAGTCTCCTGTTTTATCAGCACTAAGACAGGGCTTTCCCAGGCGACCT
GCCTCCAGTAAAAGCCTGCTCCTTTTGATAGACTTTGGAAGGGCTTTAGTAGGTCTCTTG
TAGCAGCACAAACTAGATAGCAATGGTCATTAGGAAAGGAATTAGGATCCACGTGAGGTA
TGAGAGGCTTTAGTTAATGGCTATCTCTACCTCCCTGCTTCCTGACTCTGACAATGGTTG
TAAAGATTGCTGTTTTCCTCTGGCAACAATGCCAAGGAACAGTATGTATGAATGTCTTTA
ATAAAAACTAACTTTGAACACAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19071715|gb|AAL79958.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19071715|gb|AAL79958.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               211-536, gnl|bosTau2|chr18 (14674890-14675211)
               

               
               211-536, gnl|Hg17|chr16 (66902020-66901691)
               

               
               211-536, gnl|Mm7|chr8 (104809487-104809191)
               


               
               1241-1569, gnl|bosTau2|chr18 (14685379-14685709)
               

               
               1241-1569, gnl|Hg17|chr16 (66892365-66892031)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-536, gnl|bosTau2|chr18 (14674890-14675211)
               

               
               211-536, gnl|Hg17|chr16 (66902020-66901691)
               

               
               211-536, gnl|Mm7|chr8 (104809487-104809191)
               


               
               1241-1569, gnl|bosTau2|chr18 (14685379-14685709)
               

               
               1241-1569, gnl|Hg17|chr16 (66892365-66892031)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cov (0.132153)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               vin (0.332557)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cov (0.132153)

	211-536, gnl\|bosTau2\|chr18 (14674890-14675211)
	211-536, gnl\|Hg17\|chr16 (66902020-66901691)
	211-536, gnl\|Mm7\|chr8 (104809487-104809191)

	1241-1569, gnl\|bosTau2\|chr18 (14685379-14685709)
	1241-1569, gnl\|Hg17\|chr16 (66892365-66892031)

	tbr (0.462535)
	vin (0.332557)
	pgl (0.236967)
	pan (0.23596)
	hea (0.204499)
	mgm (0.180343)
	mcp (0.170648)
	liv (0.146284)
	spl (0.143184)
	cov (0.132153)