Ss1.1-Utr1-UTR010032A02.5
|
AACCACTTCCGGGGCAGTGCCGCGGCGGCGCGGGAGAGGTCGGCTCTGGAGAGTGTTGAG
TCGGAGGAGACCTCAGGCAGCAGGCAGCTGGGGCCATGGCCTCCGACCTGGACTTCTCAC
CTCCTGAGGTGCCCGAGCCCACGTTCCTGGAGAACCTGCTGCGGTATGGACTCTTCCTGG
GGGCCATCTTCCAGCTCATCTGTGTGCTGGCCATCATCGTGCCTGTGCCCAAGTCCCACG
AGACGGAGGCAGAACCGTCTGAGCCCCGAAGTACAGAGGTGACGAGGAAGCCTAAGGCCA
CTGCTCCTTCTGCAAACAAGAGGCCCAAGAAGGAGGCCAAGAAGAAGCGGTAGAAGAGGC
GGCCTGTAGAGCCCGGTGGGCGGGGCCAGGGCCTTGGGGGCGGGGCCCCCACCGGTCCCC
TGGGGCTCAAAGTCCTGTTCCCTCACTTCATCCCAGCCTCAGGATCTGAGGTGGCTGGGA
TGCCCTCTGACCACAGAGAGCTGGACAGTCACGACAGGCCCCAGGCCCCAGCTGGGCAGA
CTCCACTTCCACTTCCTTCTGCTTCCCCGATGGTTTAGAGCCATGGGGAGTGAAACCCCC
TGTGAGCAGAGACTGCCTTGGAAGTCTCTCAGAAGCGGGGCGGCTGACAGTTGCATTTTC
TTACTTAATCCCCATGTCCTGCCTTATAGATTCACACTACATCTCAGAGTCCTTATCTGA
TGCTGACAAGCACTGCCCTCTCCCATCCTCTGTGTCCTGCAGATCAGATCTCCTGCTAAT
CAGTCACCTTTGTCTCTGCTTGTGCACATGGAGCCAGGCCAGGCGTCCCCTGTTTGTTTA
AGTCAAGACACTAAGGCCACTGCAGCGCTAGTGGTCCTACTGGTACAACAGCCAGTCTGG
AAGATGCCTGGCAGGAGGGCCAGCAGATGGCAGGGACTTGGCTGAAGGAGTGTATATTCT
TCGGCTCAACTTCCTGAGCCTCTGAAATGGGGGACTTGTCAATCACAGACCAACCTCTTT
TCAACCCATCACAGCACATTCAAGATATTCTTTTTGGCTTCCATCTGTACCCCCTCCCCT
CCCCCCTCCCCGCCGCCGTTCTTAAAACTCCTGACCAGTGAGGAAAAGTCACTTGGGGGA
GTGGATGTCAATAAACGGCCCCGAACGCTGAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACCACTTCCGGGGCAGTGCCGCGGCGGCGCGGGAGAGGTCGGCTCTGGAGAGTGTTGAG
TCGGAGGAGACCTCAGGCAGCAGGCAGCTGGGGCCATGGCCTCCGACCTGGACTTCTCAC
CTCCTGAGGTGCCCGAGCCCACGTTCCTGGAGAACCTGCTGCGGTATGGACTCTTCCTGG
GGGCCATCTTCCAGCTCATCTGTGTGCTGGCCATCATCGTGCCTGTGCCCAAGTCCCACG
AGACGGAGGCAGAACCGTCTGAGCCCCGAAGTACAGAGGTGACGAGGAAGCCTAAGGCCA
CTGCTCCTTCTGCAAACAAGAGGCCCAAGAAGGAGGCCAAGAAGAAGCGGTAGAAGAGGC
GGCCTGTAGAGCCCGGTGGGCGGGGCCAGGGCCTTGGGGGCGGGGCCCCCACCGGTCCCC
TGGGGCTCAAAGTCCTGTTCCCTCACTTCATCCCAGCCTCAGGATCTGAGGTGGCTGGGA
TGCCCTCTGACCACAGAGAGCTGGACAGTCACGACAGGCCCCAGGCCCCAGCTGGGCAGA
CTCCACTTCCACTTCCTTCTGCTTCCCCGATGGTTTAGAGCCATGGGGAGTGAAACCCCC
TGTGAGCAGAGACTGCCTTGGAAGTCTCTCAGAAGCGGGGCGGCTGACAGTTGCATTTTC
TTACTTAATCCCCATGTCCTGCCTTATAGATTCACACTACATCTCAGAGTCCTTATCTGA
TGCTGACAAGCACTGCCCTCTCCCATCCTCTGTGTCCTGCAGATCAGATCTCCTGCTAAT
CAGTCACCTTTGTCTCTGCTTGTGCACATGGAGCCAGGCCAGGCGTCCCCTGTTTGTTTA
AGTCAAGACACTAAGGCCACTGCAGCGCTAGTGGTCCTACTGGTACAACAGCCAGTCTGG
AAGATGCCTGGCAGGAGGGCCAGCAGATGGCAGGGACTTGGCTGAAGGAGTGTATATTCT
TCGGCTCAACTTCCTGAGCCTCTGAAATGGGGGACTTGTCAATCACAGACCAACCTCTTT
TCAACCCATCACAGCACATTCAAGATATTCTTTTTGGCTTCCATCTGTACCCCCTCCCCT
CCCCCCTCCCCGCCGCCGTTCTTAAAACTCCTGACCAGTGAGGAAAAGTCACTTGGGGGA
GTGGATGTCAATAAACGGCCCCGAACGCTGAAAAAA
|
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gi|16877093|gb|AAH16822.1| |
Protein identifier
|
gi|16877093|gb|AAH16822.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
245-387, gnl|bosTau2|chr13 (49403740-49403598) |
|
245-387, gnl|canFam2|chr26 (12841154-12841263) |
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245-387, gnl|danRer3|chr7 (52420519-52420604) |
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245-387, gnl|fr1|chrUn (115269354-115269463) |
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245-387, gnl|Hg17|chr20 (35378124-35378273) |
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245-387, gnl|hg17|chr4 (104012863-104012972) |
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245-387, gnl|loxAfr1|scaffold_7144 (24740-24646) |
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245-387, gnl|mm7|chr2 (157136800-157136917) |
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245-387, gnl|Mm7|chr2 (157136799-157136948) |
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245-387, gnl|oryCun1|scaffold_190704 (9715-9613) |
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245-387, gnl|panTro1|chr21 (37699270-37699379) |
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245-387, gnl|rheMac2|chr5 (95716113-95716222) |
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245-387, gnl|rn3|chr3 (148001371-148001480) |
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245-387, gnl|tetNig1|chr11 (7436192-7436084) |
| |
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460-1086, gnl|bosTau2|chr13 (49403575-49402926) |
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460-1086, gnl|Hg17|chr20 (35378325-35379001) |
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460-1086, gnl|Mm7|chr2 (157137013-157137580) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
245-387, gnl|bosTau2|chr13 (49403740-49403598) |
|
245-387, gnl|canFam2|chr26 (12841154-12841263) |
|
245-387, gnl|danRer3|chr7 (52420519-52420604) |
|
245-387, gnl|fr1|chrUn (115269354-115269463) |
|
245-387, gnl|Hg17|chr20 (35378124-35378273) |
|
245-387, gnl|hg17|chr4 (104012863-104012972) |
|
245-387, gnl|loxAfr1|scaffold_7144 (24740-24646) |
|
245-387, gnl|mm7|chr2 (157136800-157136917) |
|
245-387, gnl|Mm7|chr2 (157136799-157136948) |
|
245-387, gnl|oryCun1|scaffold_190704 (9715-9613) |
|
245-387, gnl|panTro1|chr21 (37699270-37699379) |
|
245-387, gnl|rheMac2|chr5 (95716113-95716222) |
|
245-387, gnl|rn3|chr3 (148001371-148001480) |
|
245-387, gnl|tetNig1|chr11 (7436192-7436084) |
| |
|
460-1086, gnl|bosTau2|chr13 (49403575-49402926) |
|
460-1086, gnl|Hg17|chr20 (35378325-35379001) |
|
460-1086, gnl|Mm7|chr2 (157137013-157137580) |
|
cga (0.558191) |
|
jej (0.296765) |
|
eje (0.296501) |
|
nmm (0.265604) |
|
ebs (0.236602) |
|
nbm (0.198649) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
hyp (0.142837) |
|
cov (0.132153) |
|
ese (0.126502) |
|
cly (0.120642) |
|
eru (0.120048) |
|
cty (0.10408) |
|
cga (0.558191) |
|
jej (0.296765) |
|
eje (0.296501) |
|
nmm (0.265604) |
|
ebs (0.236602) |
|
nbm (0.198649) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
hyp (0.142837) |
|
cov (0.132153) |
|
ese (0.126502) |
|
cly (0.120642) |
|
eru (0.120048) |
|
cty (0.10408) |
