Ss1.1-Utr1-UTR010032D01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCGCCTGCGAATGGCGGTGGTGTTTTGGCCCGCCGGTGGAGCCGTAGCTACAGTCTC CTCGGGCGTTCGCAGCCGGAAAACCGGCTGTCCAGGATCCCGGACCGAGGTCCACAATGT CGGAGCAGGAGGCTAGGCAGAGCGGAGGTTCCCCGGAGGCCAGCGGGGTGACTGTAAGCG ACATTCAGGCGCTGATACGGCGCAAGGAGGAGATCGAGGCGCAGATCAAAGCCAATTATG ACGTGCTGGAGAGCCAAAAAGGCGTGGGGATGAACGAGCCGCTAGTGGACTGCGAGGGCT ACCCCCGGTCAGATGTGGACCTGTACCAAGTCCGAACAGCAAGGCACAACATCGTCTGCT TGCAGAACGATCACAAGGCAGTGATGAAGCAGGTGGAGGAGGCCCTGCACCAGCTGCATG CCCGAGACAAGGAGAAGCAGGCCCAGGACCTGGCTGAGGCCCACAGGGAGGCCCTGAGCC TTGGCCTGGGCCAGAGCCAGGGCCTCAGCCTCCCTCAGGCCTTCGCCAAAGTGAACAGCA TCAGCCCCGGCTCCCCCGCCAGCATCGCGGGTCTGCAAGTGGATGACGAGATTGTGGAGT TTGGCTCTGTAAATACCCAAAACTTCCAGTCACTGCAGAATATTGGCAGCGTGGTCCAGC ACAGTGAGGGGAAGCCCCTGAATGTGACAGTGATCCGAAGAGGGGAGAAACACCAGCTTA GACTCGTCCCAACACGCTGGGCAGGAAAAGGATTGCTGGGCTGCAACATTATTCCTTTGC AAAGATGATTGTCCCTGGGGAACAGAAACAGGAAAGCATCTTCCGTTGCCCAGACTTGGT CTAGTGGGCATTTCCTCCTCTTCTTCTTTCCCTGAAGCTTAAGGATCTGGAAGAGACTGG AAGCCTGAACTAGGTGGTGGAAATGCTGTGGCCTCCCAATGAAACCTCTCAGGATTAAGG CATTGTTAAAAACTTGATTTGTATTTAGCATCTTTTGCAAATCAGGCCATGCCCCTAAAT AAGAGTCCTCTGGATTGTGAGCAAGTGGGCTGGAGTTATCCTGGCAGGTGCTGATATGAT TTTATTCTTATAGAAATTTTGGTTTTTTTTCTCAAATAAACACCATTTTACAGTACTGAT ATGACCATGTTATCACCTCAGCTGAATTGTCTTTGGACCTCTCAAGTCAAAGCTCAGATG AAAGTTAGGTTATCTTCATAGCAAGTTGGGCAGAACAAACCAACAGTTGTGCTAAAGTCA GGATTTGACCAACGACATCTCAGAAACACCATCCTTTAGGGAATGGGATTTCCAGACAGG CTGCACTGTGTCTGAGTTTGCATTGTACCATTGCTACTCTGGATACAGATATTGCATCCT CAGCAGTTGGGCTTCCAGGGTCACAACTGCTCCCTTTAATAATAGGGAAAGCTAGGAGTT CCCATGTGGCTTAGTGGGTTAAGCATCTGGTGTTGTCACTTCTGTGGCTTGAGTCATTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCGCCTGCGAATGGCGGTGGTGTTTTGGCCCGCCGGTGGAGCCGTAGCTACAGTCTC CTCGGGCGTTCGCAGCCGGAAAACCGGCTGTCCAGGATCCCGGACCGAGGTCCACAATGT CGGAGCAGGAGGCTAGGCAGAGCGGAGGTTCCCCGGAGGCCAGCGGGGTGACTGTAAGCG ACATTCAGGCGCTGATACGGCGCAAGGAGGAGATCGAGGCGCAGATCAAAGCCAATTATG ACGTGCTGGAGAGCCAAAAAGGCGTGGGGATGAACGAGCCGCTAGTGGACTGCGAGGGCT ACCCCCGGTCAGATGTGGACCTGTACCAAGTCCGAACAGCAAGGCACAACATCGTCTGCT TGCAGAACGATCACAAGGCAGTGATGAAGCAGGTGGAGGAGGCCCTGCACCAGCTGCATG CCCGAGACAAGGAGAAGCAGGCCCAGGACCTGGCTGAGGCCCACAGGGAGGCCCTGAGCC TTGGCCTGGGCCAGAGCCAGGGCCTCAGCCTCCCTCAGGCCTTCGCCAAAGTGAACAGCA TCAGCCCCGGCTCCCCCGCCAGCATCGCGGGTCTGCAAGTGGATGACGAGATTGTGGAGT TTGGCTCTGTAAATACCCAAAACTTCCAGTCACTGCAGAATATTGGCAGCGTGGTCCAGC ACAGTGAGGGGAAGCCCCTGAATGTGACAGTGATCCGAAGAGGGGAGAAACACCAGCTTA GACTCGTCCCAACACGCTGGGCAGGAAAAGGATTGCTGGGCTGCAACATTATTCCTTTGC AAAGATGATTGTCCCTGGGGAACAGAAACAGGAAAGCATCTTCCGTTGCCCAGACTTGGT CTAGTGGGCATTTCCTCCTCTTCTTCTTTCCCTGAAGCTTAAGGATCTGGAAGAGACTGG AAGCCTGAACTAGGTGGTGGAAATGCTGTGGCCTCCCAATGAAACCTCTCAGGATTAAGG CATTGTTAAAAACTTGATTTGTATTTAGCATCTTTTGCAAATCAGGCCATGCCCCTAAAT AAGAGTCCTCTGGATTGTGAGCAAGTGGGCTGGAGTTATCCTGGCAGGTGCTGATATGAT TTTATTCTTATAGAAATTTTGGTTTTTTTTCTCAAATAAACACCATTTTACAGTACTGAT ATGACCATGTTATCACCTCAGCTGAATTGTCTTTGGACCTCTCAAGTCAAAGCTCAGATG AAAGTTAGGTTATCTTCATAGCAAGTTGGGCAGAACAAACCAACAGTTGTGCTAAAGTCA GGATTTGACCAACGACATCTCAGAAACACCATCCTTTAGGGAATGGGATTTCCAGACAGG CTGCACTGTGTCTGAGTTTGCATTGTACCATTGCTACTCTGGATACAGATATTGCATCCT CAGCAGTTGGGCTTCCAGGGTCACAACTGCTCCCTTTAATAATAGGGAAAGCTAGGAGTT CCCATGTGGCTTAGTGGGTTAAGCATCTGGTGTTGTCACTTCTGTGGCTTGAGTCATTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 397-587, - strand, RNAz p=0.999599 | |
| 429-568, - strand, RNAz p=0.984692 | |
| 799-913, - strand, RNAz p=0.69296 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 397-587, - strand, RNAz p=0.999599 | |
| 429-568, - strand, RNAz p=0.984692 | |
| 799-913, - strand, RNAz p=0.69296 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 3-254, gnl|bosTau2|chr17 (28788114-28788365) | |
| 3-254, gnl|canFam2|chr26 (10417450-10417175) | |
| 3-254, gnl|echTel1|scaffold_325054 (662-926) | |
| 3-254, gnl|galGal2|chr15 (5645254-5645497) | |
| 3-254, gnl|hg17|chr12 (120789346-120789626) | |
| 3-254, gnl|Hg17|chr12 (120789367-120789620) | |
| 3-254, gnl|loxAfr1|scaffold_70370 (12813-13076) | |
| 3-254, gnl|mm7|chr5 (122463817-122464082) | |
| 3-254, gnl|Mm7|chr5 (122463833-122464076) | |
| 3-254, gnl|oryCun1|scaffold_192722 (1630-1399) | |
| 3-254, gnl|panTro1|chrUn_random (17045006-17045286) | |
| 3-254, gnl|rheMac2|chr11 (122976235-122976515) | |
| 3-254, gnl|rn3|chr12 (34335999-34336256) | |
| 358-587, gnl|bosTau2|chr17 (28794822-28795043) | |
| 358-587, gnl|canFam2|chr26 (10409229-10409011) | |
| 358-587, gnl|dasNov1|scaffold_13824 (59682-59467) | |
| 358-587, gnl|echTel1|scaffold_109547 (592-356) | |
| 358-587, gnl|fr1|chrUn (48586047-48586250) | |
| 358-587, gnl|galGal2|chr15 (5645843-5646040) | |
| 358-587, gnl|hg17|chr12 (120800255-120800476) | |
| 358-587, gnl|Hg17|chr12 (120800260-120800488) | |
| 358-587, gnl|loxAfr1|scaffold_9744 (7601-7828) | |
| 358-587, gnl|mm7|chr5 (122475168-122475386) | |
| 358-587, gnl|Mm7|chr5 (122475173-122475395) | |
| 358-587, gnl|monDom2|scaffold_97 (2130262-2130488) | |
| 358-587, gnl|oryCun1|scaffold_193367 (532-753) | |
| 358-587, gnl|panTro1|chrUn_random (17056990-17057211) | |
| 358-587, gnl|rheMac2|chr11 (122987492-122987713) | |
| 358-587, gnl|rn3|chr12 (34355649-34355867) | |
| 358-587, gnl|tetNig1|chr12 (7055348-7055551) | |
| 760-1408, gnl|bosTau2|chr17 (28802581-28803227) | |
| 760-1408, gnl|Hg17|chr12 (120816909-120817489) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-254, gnl|bosTau2|chr17 (28788114-28788365) | |
| 3-254, gnl|canFam2|chr26 (10417450-10417175) | |
| 3-254, gnl|echTel1|scaffold_325054 (662-926) | |
| 3-254, gnl|galGal2|chr15 (5645254-5645497) | |
| 3-254, gnl|hg17|chr12 (120789346-120789626) | |
| 3-254, gnl|Hg17|chr12 (120789367-120789620) | |
| 3-254, gnl|loxAfr1|scaffold_70370 (12813-13076) | |
| 3-254, gnl|mm7|chr5 (122463817-122464082) | |
| 3-254, gnl|Mm7|chr5 (122463833-122464076) | |
| 3-254, gnl|oryCun1|scaffold_192722 (1630-1399) | |
| 3-254, gnl|panTro1|chrUn_random (17045006-17045286) | |
| 3-254, gnl|rheMac2|chr11 (122976235-122976515) | |
| 3-254, gnl|rn3|chr12 (34335999-34336256) | |
| 358-587, gnl|bosTau2|chr17 (28794822-28795043) | |
| 358-587, gnl|canFam2|chr26 (10409229-10409011) | |
| 358-587, gnl|dasNov1|scaffold_13824 (59682-59467) | |
| 358-587, gnl|echTel1|scaffold_109547 (592-356) | |
| 358-587, gnl|fr1|chrUn (48586047-48586250) | |
| 358-587, gnl|galGal2|chr15 (5645843-5646040) | |
| 358-587, gnl|hg17|chr12 (120800255-120800476) | |
| 358-587, gnl|Hg17|chr12 (120800260-120800488) | |
| 358-587, gnl|loxAfr1|scaffold_9744 (7601-7828) | |
| 358-587, gnl|mm7|chr5 (122475168-122475386) | |
| 358-587, gnl|Mm7|chr5 (122475173-122475395) | |
| 358-587, gnl|monDom2|scaffold_97 (2130262-2130488) | |
| 358-587, gnl|oryCun1|scaffold_193367 (532-753) | |
| 358-587, gnl|panTro1|chrUn_random (17056990-17057211) | |
| 358-587, gnl|rheMac2|chr11 (122987492-122987713) | |
| 358-587, gnl|rn3|chr12 (34355649-34355867) | |
| 358-587, gnl|tetNig1|chr12 (7055348-7055551) | |
| 760-1408, gnl|bosTau2|chr17 (28802581-28803227) | |
| 760-1408, gnl|Hg17|chr12 (120816909-120817489) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| ese (0.379507) | |
| cov (0.264306) | |
| ova (0.258264) | |
| bla (0.248694) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| lun (0.150489) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.379507) | |
| cov (0.264306) | |
| ova (0.258264) | |
| bla (0.248694) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| lun (0.150489) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) |