Ss1.1-Utr1-UTR010032D08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGAGAGCGCCGCCACCGAGGGTTGCGCCAGGCTGCGGCGAATAATGGGAGCGCGAAT GTTTCCTTTTGACTCTTCACCTTAGACCCCGGTGTGAGAGACTCTTAAGGCCCCCATAGG GTGAAGCCCAGGTTTAGGAGCCTGTGCAGCCTTTCCCGGACTTCTGTCACCAGCTCAGGC GCACCGAGGGCAGTCTCTGTGGGGTCCTCGTGGCCAGCCAAGATGGCTGCCCCCGCGGTG AAGGCTGCGCGAGGGTGGTCGTGCTCGGCCTTGGGCGTGCGGATTGCCGTCCTCCGGTTT CCAGGGCTAACCCAGGTGAGGTGGAGCCGCTATGGTCCTGAATACAAGGATCCCCAGATT GACAAGGAATATTACCGCAAGCCGTTGGCGGAGCAGACGGAGGAGGAGAAGTATGAGCGG GATTTCAAGAAGACGCAACTTATCAAAGCCGCCCCCGCGACCAAAACAAGTTCTGTGTTT GAAGACCCGGTGATCAGTAAATTCACCAACATGATGATGAAAGGAGGAAACAAAGTACTG GCCAGATCCCTCATGACACAGACACTGGAAGCTGTGAAGAGAAAGCAGTTTGCCAAGTAC CACGCTGCCTCTGCTGAGGAACAAGCAACCATCGAACGCAACCCTTATACCATCTTCCAC CAGGCCCTGAAAAACTGTGAGCCTGTGATCGGGCTGGTACCCATCCTCAAGGGTGGCCAT TTCTACCAGGTCCCTGTGCCGCTAGCTGATCGGCGTCGCCGCTTCCTGGCCATGAAGTGG ATGATCGCTGAGTGCAGGGAGAAGAAGCATCGGCGGGTGCTGATGCCGGAGAAGCTGTCG CAGGAGCTGCTGGAGGCTTTTCACAACCAGGGCCCTGTGATCAAGAGGAAGCATGACATG CACAAGATGGCCGAGGCCAACCGCGCGCTGGCCCACTACCGCTGGTGGTAGAGGGCGGCC GGGGGCTGGCGAGGCCTGGCGCTCTCTGCTGCAGGAACCAGTGGGAACCGATGGGAGCCC CTGCCATGCTGAGAAACACCTGGGGTTTAAGAGTCTAGTTCCCTTTAAAGGGCCGGCAGG CCTCATGAGAACGATGGAGCAGCGTGTTGATTGCTGTGAGTCCTTTCTTTGGGGGCTAGA ACTCGCTCTCCCTGCCCCATCTCCTTGCAAAGAGGGGACATAGCAACTTGGATTTCCAAG ACACAGGCTTGTCCAGCCTTCTCTTCTCTCAGCTTGGGGCAGACCTTTGGGCAATACGAA AGGAAGCAGTTTTAGTATCAGAAAATGTTTATTAGAAAATTCTCATCCTGAAGTGGTGTG GCTTGCGATGTGGTAGTGCCCTTCATTAAAACCAGCGGCAGGAAGGGTGCTTGGTTCCAA AGTGATCCTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGAGAGCGCCGCCACCGAGGGTTGCGCCAGGCTGCGGCGAATAATGGGAGCGCGAAT GTTTCCTTTTGACTCTTCACCTTAGACCCCGGTGTGAGAGACTCTTAAGGCCCCCATAGG GTGAAGCCCAGGTTTAGGAGCCTGTGCAGCCTTTCCCGGACTTCTGTCACCAGCTCAGGC GCACCGAGGGCAGTCTCTGTGGGGTCCTCGTGGCCAGCCAAGATGGCTGCCCCCGCGGTG AAGGCTGCGCGAGGGTGGTCGTGCTCGGCCTTGGGCGTGCGGATTGCCGTCCTCCGGTTT CCAGGGCTAACCCAGGTGAGGTGGAGCCGCTATGGTCCTGAATACAAGGATCCCCAGATT GACAAGGAATATTACCGCAAGCCGTTGGCGGAGCAGACGGAGGAGGAGAAGTATGAGCGG GATTTCAAGAAGACGCAACTTATCAAAGCCGCCCCCGCGACCAAAACAAGTTCTGTGTTT GAAGACCCGGTGATCAGTAAATTCACCAACATGATGATGAAAGGAGGAAACAAAGTACTG GCCAGATCCCTCATGACACAGACACTGGAAGCTGTGAAGAGAAAGCAGTTTGCCAAGTAC CACGCTGCCTCTGCTGAGGAACAAGCAACCATCGAACGCAACCCTTATACCATCTTCCAC CAGGCCCTGAAAAACTGTGAGCCTGTGATCGGGCTGGTACCCATCCTCAAGGGTGGCCAT TTCTACCAGGTCCCTGTGCCGCTAGCTGATCGGCGTCGCCGCTTCCTGGCCATGAAGTGG ATGATCGCTGAGTGCAGGGAGAAGAAGCATCGGCGGGTGCTGATGCCGGAGAAGCTGTCG CAGGAGCTGCTGGAGGCTTTTCACAACCAGGGCCCTGTGATCAAGAGGAAGCATGACATG CACAAGATGGCCGAGGCCAACCGCGCGCTGGCCCACTACCGCTGGTGGTAGAGGGCGGCC GGGGGCTGGCGAGGCCTGGCGCTCTCTGCTGCAGGAACCAGTGGGAACCGATGGGAGCCC CTGCCATGCTGAGAAACACCTGGGGTTTAAGAGTCTAGTTCCCTTTAAAGGGCCGGCAGG CCTCATGAGAACGATGGAGCAGCGTGTTGATTGCTGTGAGTCCTTTCTTTGGGGGCTAGA ACTCGCTCTCCCTGCCCCATCTCCTTGCAAAGAGGGGACATAGCAACTTGGATTTCCAAG ACACAGGCTTGTCCAGCCTTCTCTTCTCTCAGCTTGGGGCAGACCTTTGGGCAATACGAA AGGAAGCAGTTTTAGTATCAGAAAATGTTTATTAGAAAATTCTCATCCTGAAGTGGTGTG GCTTGCGATGTGGTAGTGCCCTTCATTAAAACCAGCGGCAGGAAGGGTGCTTGGTTCCAA AGTGATCCTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 885-1244, - strand, RNAz p=0.998285 | |
| 893-1009, + strand, RNAz p=0.575823 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 885-1244, - strand, RNAz p=0.998285 | |
| 893-1009, + strand, RNAz p=0.575823 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-306, gnl|bosTau2|chr19 (50798249-50797938) | |
| 1-306, gnl|Hg17|chr17 (70769349-70769660) | |
| 1-306, gnl|Mm7|chr11 (115713003-115713289) | |
| 726-1009, gnl|bosTau2|chr19 (50795427-50795144) | |
| 726-1009, gnl|canFam2|chr9 (8229714-8229479) | |
| 726-1009, gnl|danRer3|chrNA (119915773-119915544) | |
| 726-1009, gnl|dasNov1|scaffold_147234 (3680-3442) | |
| 726-1009, gnl|echTel1|scaffold_276178 (9844-9606) | |
| 726-1009, gnl|fr1|chrUn (236117832-236118068) | |
| 726-1009, gnl|galGal2|chr3_random (1412381-1412607) | |
| 726-1009, gnl|hg17|chr17 (70773362-70773600) | |
| 726-1009, gnl|Hg17|chr17 (70773374-70773670) | |
| 726-1009, gnl|loxAfr1|scaffold_2677 (29042-28804) | |
| 726-1009, gnl|mm7|chr11 (115715857-115716085) | |
| 726-1009, gnl|Mm7|chr11 (115715859-115716126) | |
| 726-1009, gnl|monDom2|scaffold_18 (32778676-32778914) | |
| 726-1009, gnl|oryCun1|scaffold_113796 (4437-4653) | |
| 726-1009, gnl|panTro1|chr19 (74122869-74123107) | |
| 726-1009, gnl|rheMac2|chr16 (70556270-70556507) | |
| 726-1009, gnl|rn3|chr10 (105700897-105701135) | |
| 726-1009, gnl|tetNig1|chr3 (8723965-8724201) | |
| 726-1009, gnl|xenTro1|scaffold_632 (125685-125447) | |
| 1039-1390, gnl|bosTau2|chr19 (50795145-50794789) | |
| 1039-1390, gnl|Hg17|chr17 (70773648-70774018) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-306, gnl|bosTau2|chr19 (50798249-50797938) | |
| 1-306, gnl|Hg17|chr17 (70769349-70769660) | |
| 1-306, gnl|Mm7|chr11 (115713003-115713289) | |
| 726-1009, gnl|bosTau2|chr19 (50795427-50795144) | |
| 726-1009, gnl|canFam2|chr9 (8229714-8229479) | |
| 726-1009, gnl|danRer3|chrNA (119915773-119915544) | |
| 726-1009, gnl|dasNov1|scaffold_147234 (3680-3442) | |
| 726-1009, gnl|echTel1|scaffold_276178 (9844-9606) | |
| 726-1009, gnl|fr1|chrUn (236117832-236118068) | |
| 726-1009, gnl|galGal2|chr3_random (1412381-1412607) | |
| 726-1009, gnl|hg17|chr17 (70773362-70773600) | |
| 726-1009, gnl|Hg17|chr17 (70773374-70773670) | |
| 726-1009, gnl|loxAfr1|scaffold_2677 (29042-28804) | |
| 726-1009, gnl|mm7|chr11 (115715857-115716085) | |
| 726-1009, gnl|Mm7|chr11 (115715859-115716126) | |
| 726-1009, gnl|monDom2|scaffold_18 (32778676-32778914) | |
| 726-1009, gnl|oryCun1|scaffold_113796 (4437-4653) | |
| 726-1009, gnl|panTro1|chr19 (74122869-74123107) | |
| 726-1009, gnl|rheMac2|chr16 (70556270-70556507) | |
| 726-1009, gnl|rn3|chr10 (105700897-105701135) | |
| 726-1009, gnl|tetNig1|chr3 (8723965-8724201) | |
| 726-1009, gnl|xenTro1|scaffold_632 (125685-125447) | |
| 1039-1390, gnl|bosTau2|chr19 (50795145-50794789) | |
| 1039-1390, gnl|Hg17|chr17 (70773648-70774018) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| cov (0.264306) | |
| eep (0.245128) | |
| nms (0.213858) | |
| cty (0.20816) | |
| tes (0.207814) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| cov (0.264306) | |
| eep (0.245128) | |
| nms (0.213858) | |
| cty (0.20816) | |
| tes (0.207814) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) |