Non-Coding RNA Search

Ss1.1-Utr1-UTR010032F11.5

Sequence:


               
               AGACAGATAGTCCCAGCTCCAGTCCCAGCCGTGCCCTGGCAGCTCCGGCGACGCTCCGGA
GCGCGGCGACAGCTGACTGCGCGTTCACGACCCGCTGGGAGCCACGAGCCCCGCCGCCGT
TATGAACATCCGCAATGCGAGGCCAGAGGACCTGATGAACATGCAGCACTGCAACCTCCT
GTGCCTGCCGGAGAACTACCAGATGAAATATTACTTCTACCACGGCCTTTCCTGGCCCCA
GCTCTCTTACATCGCCGAGGATGAGAATGGGAAGATTGTGGGGTACGTCCTGGCCAAAAT
GGAAGAGGACCCTGACGACGTGCCCCACGGCCACATCACCTCATTGGCAGTGAAGCGTTC
CCACCGGCGCCTCGGCCTGGCTCAGAAGCTGATGGACCAGGCCTCCCGAGCCATGATTGA
GAACTTCAACGCCAAATACGTCTCGCTGCATGTCCGGAAGAGTAACCGGGCCGCCTTGCA
CCTCTACTCCAACACCCTCAACTTTCAGATCAGCGAAGTGGAGCCCAAGTACTACGCAGA
CGGGGAGGATGCATATGCGATGAAGCGAGATCTCACCCAGATGGCCGACGAGCTGCGGCG
GCACCTGGAGCTGAAGGACAAGGGCAGGCACGTGGTGCTGGGCTCCATCGAGAACAAGGC
AGACAGCAAGGGCAACTCGCTTCCAAGCTCGGGAGAGGCCTGTCGTGAGGAAAAGGGCCT
GGCTGCTGAGGACAGCGGTGGTGACAGCAAGGACCTCAGCGAGGTCAGCGAGACCACAGA
GAGCACCGACGTCAAGGACAGCTCAGAGGCCTCGGATTCGGCCTCCTAGAGCCTGCACGT
GCTCGGCTCCCTGCCCTGGCCTGCCCATCCCATCCTCACCGCGAGAGGTTTCACAATAAA
CTTCACCCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACAGATAGTCCCAGCTCCAGTCCCAGCCGTGCCCTGGCAGCTCCGGCGACGCTCCGGA
GCGCGGCGACAGCTGACTGCGCGTTCACGACCCGCTGGGAGCCACGAGCCCCGCCGCCGT
TATGAACATCCGCAATGCGAGGCCAGAGGACCTGATGAACATGCAGCACTGCAACCTCCT
GTGCCTGCCGGAGAACTACCAGATGAAATATTACTTCTACCACGGCCTTTCCTGGCCCCA
GCTCTCTTACATCGCCGAGGATGAGAATGGGAAGATTGTGGGGTACGTCCTGGCCAAAAT
GGAAGAGGACCCTGACGACGTGCCCCACGGCCACATCACCTCATTGGCAGTGAAGCGTTC
CCACCGGCGCCTCGGCCTGGCTCAGAAGCTGATGGACCAGGCCTCCCGAGCCATGATTGA
GAACTTCAACGCCAAATACGTCTCGCTGCATGTCCGGAAGAGTAACCGGGCCGCCTTGCA
CCTCTACTCCAACACCCTCAACTTTCAGATCAGCGAAGTGGAGCCCAAGTACTACGCAGA
CGGGGAGGATGCATATGCGATGAAGCGAGATCTCACCCAGATGGCCGACGAGCTGCGGCG
GCACCTGGAGCTGAAGGACAAGGGCAGGCACGTGGTGCTGGGCTCCATCGAGAACAAGGC
AGACAGCAAGGGCAACTCGCTTCCAAGCTCGGGAGAGGCCTGTCGTGAGGAAAAGGGCCT
GGCTGCTGAGGACAGCGGTGGTGACAGCAAGGACCTCAGCGAGGTCAGCGAGACCACAGA
GAGCACCGACGTCAAGGACAGCTCAGAGGCCTCGGATTCGGCCTCCTAGAGCCTGCACGT
GCTCGGCTCCCTGCCCTGGCCTGCCCATCCCATCCTCACCGCGAGAGGTTTCACAATAAA
CTTCACCCAGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|17939652|gb|AAH19312.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|17939652|gb|AAH19312.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               312-471, - strand, RNAz p=0.960169

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-471, - strand, RNAz p=0.960169

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               113-834, gnl|bosTau2|chr6 (51505477-51506180)
               

               
               113-834, gnl|Hg17|chr4 (80604219-80603516)
               

               
               113-834, gnl|Mm7|chr5 (96605656-96604985)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-834, gnl|bosTau2|chr6 (51505477-51506180)
               

               
               113-834, gnl|Hg17|chr4 (80604219-80603516)
               

               
               113-834, gnl|Mm7|chr5 (96605656-96604985)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               cov (0.660764)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.660764)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	113-834, gnl\|bosTau2\|chr6 (51505477-51506180)
	113-834, gnl\|Hg17\|chr4 (80604219-80603516)
	113-834, gnl\|Mm7\|chr5 (96605656-96604985)

	cov (0.660764)
	mcp (0.341297)
	cag (0.302389)
	nbm (0.297974)
	fce (0.271592)
	med (0.232504)
	fli (0.202881)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	fco (0.157208)
	hyp (0.142837)
	cly (0.120642)
	eru (0.120048)
	jca (0.11396)
	eje (0.0988338)