Non-Coding RNA Search

Ss1.1-Utr1-UTR010032H01.5

Sequence:


               
               TACAAGAAGACACCATAATTTTGTTGCACAAGTTCTGCCTTCATGTGTACTAAAATGGAT
TCAAGAGAAGCACTTGAATAAAAGATTTGACCATGCAAATTATGGATTAAGTATTACAAA
GGGGTATTTGATTTTTTTGTTTAATGGTAAATGTATTGAATCAGTATTTCTCATCCTATT
TTATTCAGAATTCAAAATGTTCAATAATTGCCTTTGTTTAATCCTGTTCTAAGCTTATTT
TCTTTAGAATGTCCATCAATACCACAGCAGTTCTTAAAAATAGGAGTATTCTGTCTGGTA
AAAAAAGTAATAATTCATGAGGCTAGAAGAAAATGAAGAATGAAAACTTTATTTCAAGTT
TTCAAATCAAGAAACTTAAACTGGGAGTTCCCGTCGTGGTTAATGAATCCGACTAGGAAC
CACGAAGTTGAGGGTTCGATCCCTGCCCTTGCTCAGTGAGTTAACGATCCGGCGTTGCGG
TGAGCTGTGGTGTAGGTCGCAGACGCGGCTCTGGCATAGGCTGGTGGCTGCAGCTCCGAT
TAGACCCCTAGCCTGGGAACCTCCATATGCCGTGGGAGCGGCCCAAGAAAAGACAAAAAA
ACAAAAAACAAAAAAACAAACAAACAAAAAAAAGAAACTTAAACTGGCCTTGAGGAATCT
CAGGATGGCTGCCAGCTACATCTCCAATTCAACCCCTAGCCTGGGAACTTCCATGTGCTG
CTGGTGTGGCCCTTAAAAAAAAAAAATGAGAAGCAAGAAATCCAATAGAAAACTGGACAA
AGAATTAGAATAGGCAAATTACAGAAGGAGGAATCTGAATGTCTAAAAAGAAAAAAGAAG
AAAAGAAAAGATGCTCAAACTCTCTATTGATCAAAAATGTAAGTTAAAATAACAACGAAG
AGTTCCCATCCAGGCTCAGCAGTAACAAATCCAGCTAGTATCCATGAGGACGTGGCTTCA
ATCCCTGGCCTAGCTCAGTGGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAAGAAGACACCATAATTTTGTTGCACAAGTTCTGCCTTCATGTGTACTAAAATGGAT
TCAAGAGAAGCACTTGAATAAAAGATTTGACCATGCAAATTATGGATTAAGTATTACAAA
GGGGTATTTGATTTTTTTGTTTAATGGTAAATGTATTGAATCAGTATTTCTCATCCTATT
TTATTCAGAATTCAAAATGTTCAATAATTGCCTTTGTTTAATCCTGTTCTAAGCTTATTT
TCTTTAGAATGTCCATCAATACCACAGCAGTTCTTAAAAATAGGAGTATTCTGTCTGGTA
AAAAAAGTAATAATTCATGAGGCTAGAAGAAAATGAAGAATGAAAACTTTATTTCAAGTT
TTCAAATCAAGAAACTTAAACTGGGAGTTCCCGTCGTGGTTAATGAATCCGACTAGGAAC
CACGAAGTTGAGGGTTCGATCCCTGCCCTTGCTCAGTGAGTTAACGATCCGGCGTTGCGG
TGAGCTGTGGTGTAGGTCGCAGACGCGGCTCTGGCATAGGCTGGTGGCTGCAGCTCCGAT
TAGACCCCTAGCCTGGGAACCTCCATATGCCGTGGGAGCGGCCCAAGAAAAGACAAAAAA
ACAAAAAACAAAAAAACAAACAAACAAAAAAAAGAAACTTAAACTGGCCTTGAGGAATCT
CAGGATGGCTGCCAGCTACATCTCCAATTCAACCCCTAGCCTGGGAACTTCCATGTGCTG
CTGGTGTGGCCCTTAAAAAAAAAAAATGAGAAGCAAGAAATCCAATAGAAAACTGGACAA
AGAATTAGAATAGGCAAATTACAGAAGGAGGAATCTGAATGTCTAAAAAGAAAAAAGAAG
AAAAGAAAAGATGCTCAAACTCTCTATTGATCAAAAATGTAAGTTAAAATAACAACGAAG
AGTTCCCATCCAGGCTCAGCAGTAACAAATCCAGCTAGTATCCATGAGGACGTGGCTTCA
ATCCCTGGCCTAGCTCAGTGGGTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-355, gnl|bosTau2|chr16 (27134964-27135320)
               

               
               1-355, gnl|Hg17|chr1 (168033583-168034027)
               

               
               1-355, gnl|Mm7|chr1 (162764919-162763824)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-355, gnl|bosTau2|chr16 (27134964-27135320)
               

               
               1-355, gnl|Hg17|chr1 (168033583-168034027)
               

               
               1-355, gnl|Mm7|chr1 (162764919-162763824)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cst (0.140036)
               

               
               che (0.136314)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               thg (0.126791)

	1-355, gnl\|bosTau2\|chr16 (27134964-27135320)
	1-355, gnl\|Hg17\|chr1 (168033583-168034027)
	1-355, gnl\|Mm7\|chr1 (162764919-162763824)