Ss1.1-Utr1-UTR010032H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCATTTGGCGGGTTTTTCCGGCCTGCTCGGTTCTCCCGTCACAGAGATGCTCCCCGGT GGCTTTTAGGAAGTAGGGCCTTCTCCCCTAGAAGAGTGACTTCTCAAGATTTCTGCTCCC TTCCTTCAGGCATTTGGGAGCTTCGGGAAAAAAAGAAAATAAAAAGTATTTCTCTGAGAC TGACGGCCAGGGCTTTCTGACCGCCTGAGGTCTTGGATTATTTGGTCACTTTCGGTCTCA GCCCCCCGGAGAGCGAAAGGATCGGAGGAACCGCGTCCTGCTCATCGATCTCCACGGCCG TGGGTTTCTTGGCGTCAGGTCGGAGCTGGGTGGGCTCGGCCCCGGCCCCCGTCCTGGGTC ATCATGGCCGTGTCCGCCCAGCTCTTGCGGGAGGAGTTGCAGATCTTCGGCCTAGAATGC GAGGATGCTCTGATTGACAAATTGGCGGAGCTGTGCGTTCTGTATGGACAGAATGAGGAG GGCATGGTGGGCGAGCTCATAGCCTTCTGCACCAGCACACGTAAGGATGGCCTCACCTCG GAAATCCTGAACTCTTTTGAGCACGAGTTTCTGAGCAGAAGATGGTCCAAAGCCAGGCCC AGTGCCTCCAAGGACAGTGGGCACGCAGGAGCCAGAGACATCGTTTCCATACAAGAGCTA ATTGAAGTGGAGGAGGAAGAGGAGACCCTCTTGAACGCTTACACCACCCCCTCCAAGGGT TCTCAGAAGCGAGCGATCACCACCCCAGAAACGCCCCTCACGAAAAGGAGTGTGTCTGCT CGAAGCCCCCATCAGCTCCTCTCGCCATCGAGTTTCTCCCTCAGTGCTACTCCCTCTCAG AAGTACAGCTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCATTTGGCGGGTTTTTCCGGCCTGCTCGGTTCTCCCGTCACAGAGATGCTCCCCGGT GGCTTTTAGGAAGTAGGGCCTTCTCCCCTAGAAGAGTGACTTCTCAAGATTTCTGCTCCC TTCCTTCAGGCATTTGGGAGCTTCGGGAAAAAAAGAAAATAAAAAGTATTTCTCTGAGAC TGACGGCCAGGGCTTTCTGACCGCCTGAGGTCTTGGATTATTTGGTCACTTTCGGTCTCA GCCCCCCGGAGAGCGAAAGGATCGGAGGAACCGCGTCCTGCTCATCGATCTCCACGGCCG TGGGTTTCTTGGCGTCAGGTCGGAGCTGGGTGGGCTCGGCCCCGGCCCCCGTCCTGGGTC ATCATGGCCGTGTCCGCCCAGCTCTTGCGGGAGGAGTTGCAGATCTTCGGCCTAGAATGC GAGGATGCTCTGATTGACAAATTGGCGGAGCTGTGCGTTCTGTATGGACAGAATGAGGAG GGCATGGTGGGCGAGCTCATAGCCTTCTGCACCAGCACACGTAAGGATGGCCTCACCTCG GAAATCCTGAACTCTTTTGAGCACGAGTTTCTGAGCAGAAGATGGTCCAAAGCCAGGCCC AGTGCCTCCAAGGACAGTGGGCACGCAGGAGCCAGAGACATCGTTTCCATACAAGAGCTA ATTGAAGTGGAGGAGGAAGAGGAGACCCTCTTGAACGCTTACACCACCCCCTCCAAGGGT TCTCAGAAGCGAGCGATCACCACCCCAGAAACGCCCCTCACGAAAAGGAGTGTGTCTGCT CGAAGCCCCCATCAGCTCCTCTCGCCATCGAGTTTCTCCCTCAGTGCTACTCCCTCTCAG AAGTACAGCTCG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 37-154, + strand, RNAz p=0.911031 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 37-154, + strand, RNAz p=0.911031 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002689, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-442, gnl|bosTau2|chr29 (34397405-34397843) | |
| 1-442, gnl|Hg17|chr11 (64785980-64786418) | |
| 443-567, gnl|bosTau2|chr29 (34400842-34400966) | |
| 443-567, gnl|canFam2|chr18 (54924983-54924811) | |
| 443-567, gnl|danRer3|chr8 (27695501-27695690) | |
| 443-567, gnl|echTel1|scaffold_311036 (89574-89406) | |
| 443-567, gnl|fr1|chrUn (28140463-28140307) | |
| 443-567, gnl|hg17|chr11 (64790601-64790773) | |
| 443-567, gnl|Hg17|chr11 (64790629-64790753) | |
| 443-567, gnl|mm7|chr19 (5856051-5855890) | |
| 443-567, gnl|Mm7|chr19 (5856021-5855897) | |
| 443-567, gnl|monDom2|scaffold_107 (3425337-3425165) | |
| 443-567, gnl|panTro1|chr9 (66033879-66034051) | |
| 443-567, gnl|rheMac2|chr14 (9178848-9178676) | |
| 443-567, gnl|rn3|chr1 (208748700-208748476) | |
| 711-818, gnl|bosTau2|chr29 (34405301-34405408) | |
| 711-818, gnl|canFam2|chr18 (54919286-54919142) | |
| 711-818, gnl|dasNov1|scaffold_1974 (11954-12098) | |
| 711-818, gnl|fr1|chrUn (28139876-28139735) | |
| 711-818, gnl|hg17|chr11 (64799914-64800059) | |
| 711-818, gnl|Hg17|chr11 (64799932-64800039) | |
| 711-818, gnl|loxAfr1|scaffold_67773 (4074-4222) | |
| 711-818, gnl|mm7|chr19 (5850946-5850802) | |
| 711-818, gnl|Mm7|chr19 (5850927-5850820) | |
| 711-818, gnl|monDom2|scaffold_107 (3419958-3419820) | |
| 711-818, gnl|oryCun1|scaffold_206317 (43042-43182) | |
| 711-818, gnl|panTro1|chr9 (66043208-66043353) | |
| 711-818, gnl|rheMac2|chr14 (9168717-9168570) | |
| 711-818, gnl|rn3|chr1 (208743206-208743062) | |
| 711-818, gnl|tetNig1|chr1 (7802839-7802967) | |
| 711-818, gnl|xenTro1|scaffold_251 (1306427-1306289) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-442, gnl|bosTau2|chr29 (34397405-34397843) | |
| 1-442, gnl|Hg17|chr11 (64785980-64786418) | |
| 443-567, gnl|bosTau2|chr29 (34400842-34400966) | |
| 443-567, gnl|canFam2|chr18 (54924983-54924811) | |
| 443-567, gnl|danRer3|chr8 (27695501-27695690) | |
| 443-567, gnl|echTel1|scaffold_311036 (89574-89406) | |
| 443-567, gnl|fr1|chrUn (28140463-28140307) | |
| 443-567, gnl|hg17|chr11 (64790601-64790773) | |
| 443-567, gnl|Hg17|chr11 (64790629-64790753) | |
| 443-567, gnl|mm7|chr19 (5856051-5855890) | |
| 443-567, gnl|Mm7|chr19 (5856021-5855897) | |
| 443-567, gnl|monDom2|scaffold_107 (3425337-3425165) | |
| 443-567, gnl|panTro1|chr9 (66033879-66034051) | |
| 443-567, gnl|rheMac2|chr14 (9178848-9178676) | |
| 443-567, gnl|rn3|chr1 (208748700-208748476) | |
| 711-818, gnl|bosTau2|chr29 (34405301-34405408) | |
| 711-818, gnl|canFam2|chr18 (54919286-54919142) | |
| 711-818, gnl|dasNov1|scaffold_1974 (11954-12098) | |
| 711-818, gnl|fr1|chrUn (28139876-28139735) | |
| 711-818, gnl|hg17|chr11 (64799914-64800059) | |
| 711-818, gnl|Hg17|chr11 (64799932-64800039) | |
| 711-818, gnl|loxAfr1|scaffold_67773 (4074-4222) | |
| 711-818, gnl|mm7|chr19 (5850946-5850802) | |
| 711-818, gnl|Mm7|chr19 (5850927-5850820) | |
| 711-818, gnl|monDom2|scaffold_107 (3419958-3419820) | |
| 711-818, gnl|oryCun1|scaffold_206317 (43042-43182) | |
| 711-818, gnl|panTro1|chr9 (66043208-66043353) | |
| 711-818, gnl|rheMac2|chr14 (9168717-9168570) | |
| 711-818, gnl|rn3|chr1 (208743206-208743062) | |
| 711-818, gnl|tetNig1|chr1 (7802839-7802967) | |
| 711-818, gnl|xenTro1|scaffold_251 (1306427-1306289) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.151814) |