Ss1.1-Utr1-UTR010033A07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGCCAAATGGGGATCAGACAGCACCATCTTCTTCACCACCTATGTGAATGGCTCCTGC AAAGCTGACCTTGGGGCCCTGGAATTACGGAGAACTTCAGACTTGGGGAAAAGCTTCAAA ACCATTGGTGTGAAAATCTACTCATTTGGTCTTGGGGGACGTTTCCTTTTTGCCTCTGTG ATGGCTGATAAGGATACAACCAGAAGGATTCATGTATCAACAGATCAAGGGGACACATGG AGCATGGCCCAGCTCCCCTCTGTGGGGCAGGAGCAGTTCTACTCTATTCTAGCAGCTAAC GATGACATGGTGTTCATGCACGTAGACGAGCCTGGAGATACCGGATTTGGCACCATATTT ACCTCGGATGATCGAGGCATCGTCTATTCCAAGTCCTTGGACCGGCACCTCTACACCACC ACAGGTGGCGAGACAGACTTTACCAACGTGACCTCCCTCCGCGGCGTCTACATGACAAGT GTGCTATCCGAAGATAATTCTATCCAGACTATGATCACTTTTGACCAAGGAGGAAGGTGG AAACACCTGAGGAAGCCTGAAAACAGTGAATGTGACGCTACCGCAAAAAATAAGAACGAG TGCAGCCTTCATATTCACGCTTCCTACAGCATCTCCCAGAAACTAAATGTCCCAATGGCC CCACTCTCAGAGCCCAATGCTGTCGGCATAGTCATCGCCCACGGTAGCGTGGGAGATGCC ATCTCAGTGATGATCCCAGATGTGTACATCTCAGATGACGGGGGTTACTCCTGGCTGAAG ATGCTGGAAGGACCCCACTATTACACCATCCTGGATTCCGGGGGCATCATTGTAGCCATC GAGCACAGCAGCCATCCTATCAATGTGATTAAGTTCTCCACAGACGAAGGTCAGTGCTGG CAAACCTACGTGTTTAGCAGGGAGCCTATCTACTTCACTGGCCTGGCCTCCGAACCCGGA GCTCGGTCCATGAACATCAGCATCTGGGGTTTCACAGAGTCTTTCCTGACTCGCCAGTGG GTCTCCTACACCATCGACTTTAAAGATATCCTTGAAAGGAACTGTGAAGAGAAGGACTAC ACCGTATGGCTGGCTCACTCCACGGACCCTGGGGATTATGGAGATGGCTGCATTTTAGGC TATAAGGAACAGTACCTCCGGCTGCGCAAGTCGTCCGTCTGTCAGAATGGTCGGGACTAT GTTGTGACCAAGCAGCCGTCCGTCTGTCCCTGTTCCCTGGAGGACTTCCTCTGTGATTTT GGCTACTTCCGTCCAGAAAACGACTCCAAGTGTGTCGAACAGCCAGAACTGAAGGGCCAT GACCTAGAGTTTTGTCTGTATGGGAGAGAAGAGCACCTGACGACAAATGGGTACCGGAAA ATTCCAGGAGACAGATGCCAGGGTGGAGTGAATCCAGCTCGAGAAGTAAAAGACTTAAAA AAGAAATGCACGAGCAACTTTTTGAGTCCAGAAAAACAGAATTCCAAGTCAAGTTCTGTT CCCATTATCCTGGCCACTGTGGGACTGATGCTGGTCACAGTCGTAGCCGGAGTGCTCATT GTGAAGAAATACGTCTGTGGGGGAAGGTTCCTGGTGCACCGATACTCTGTGCTCCAGCAG CACGCGGAGGCCAATGGGGTGGATGGCGTGGACGCCCTGGACACAGCCTCCCACACCACT AAAAGCGGTTATCACGATGACTCAGATGAGGACCTCCTGGAATAGCTCCTCAAAGGAGCT GGGACCAAGCATGGATGATGGAACCGCAGTACCTCCTACACTCCCTGTGGCTCCGACTTG GGGAAATAAATTCCCATTGCAAGGGACCCAGCTCTGTTTCTGCTGCTTCCATCAAAGCCA AAAGGACCTACACTAAAGAAATGGGGGCGGTGGGGGGCGCTAAACACTCTTAAAATTGGC TCTGAGAAGAGAGGGAAATTTTTTAATCCTTTAACTTTTCATTTTGAGTTCTGTCTTTTT GCAGGGCATGGGCCTTTTTGGTTTGGGTTTTGGTTTTGAAGGGAAATGAAATGGAAATGA AGGGAACTTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGCCAAATGGGGATCAGACAGCACCATCTTCTTCACCACCTATGTGAATGGCTCCTGC AAAGCTGACCTTGGGGCCCTGGAATTACGGAGAACTTCAGACTTGGGGAAAAGCTTCAAA ACCATTGGTGTGAAAATCTACTCATTTGGTCTTGGGGGACGTTTCCTTTTTGCCTCTGTG ATGGCTGATAAGGATACAACCAGAAGGATTCATGTATCAACAGATCAAGGGGACACATGG AGCATGGCCCAGCTCCCCTCTGTGGGGCAGGAGCAGTTCTACTCTATTCTAGCAGCTAAC GATGACATGGTGTTCATGCACGTAGACGAGCCTGGAGATACCGGATTTGGCACCATATTT ACCTCGGATGATCGAGGCATCGTCTATTCCAAGTCCTTGGACCGGCACCTCTACACCACC ACAGGTGGCGAGACAGACTTTACCAACGTGACCTCCCTCCGCGGCGTCTACATGACAAGT GTGCTATCCGAAGATAATTCTATCCAGACTATGATCACTTTTGACCAAGGAGGAAGGTGG AAACACCTGAGGAAGCCTGAAAACAGTGAATGTGACGCTACCGCAAAAAATAAGAACGAG TGCAGCCTTCATATTCACGCTTCCTACAGCATCTCCCAGAAACTAAATGTCCCAATGGCC CCACTCTCAGAGCCCAATGCTGTCGGCATAGTCATCGCCCACGGTAGCGTGGGAGATGCC ATCTCAGTGATGATCCCAGATGTGTACATCTCAGATGACGGGGGTTACTCCTGGCTGAAG ATGCTGGAAGGACCCCACTATTACACCATCCTGGATTCCGGGGGCATCATTGTAGCCATC GAGCACAGCAGCCATCCTATCAATGTGATTAAGTTCTCCACAGACGAAGGTCAGTGCTGG CAAACCTACGTGTTTAGCAGGGAGCCTATCTACTTCACTGGCCTGGCCTCCGAACCCGGA GCTCGGTCCATGAACATCAGCATCTGGGGTTTCACAGAGTCTTTCCTGACTCGCCAGTGG GTCTCCTACACCATCGACTTTAAAGATATCCTTGAAAGGAACTGTGAAGAGAAGGACTAC ACCGTATGGCTGGCTCACTCCACGGACCCTGGGGATTATGGAGATGGCTGCATTTTAGGC TATAAGGAACAGTACCTCCGGCTGCGCAAGTCGTCCGTCTGTCAGAATGGTCGGGACTAT GTTGTGACCAAGCAGCCGTCCGTCTGTCCCTGTTCCCTGGAGGACTTCCTCTGTGATTTT GGCTACTTCCGTCCAGAAAACGACTCCAAGTGTGTCGAACAGCCAGAACTGAAGGGCCAT GACCTAGAGTTTTGTCTGTATGGGAGAGAAGAGCACCTGACGACAAATGGGTACCGGAAA ATTCCAGGAGACAGATGCCAGGGTGGAGTGAATCCAGCTCGAGAAGTAAAAGACTTAAAA AAGAAATGCACGAGCAACTTTTTGAGTCCAGAAAAACAGAATTCCAAGTCAAGTTCTGTT CCCATTATCCTGGCCACTGTGGGACTGATGCTGGTCACAGTCGTAGCCGGAGTGCTCATT GTGAAGAAATACGTCTGTGGGGGAAGGTTCCTGGTGCACCGATACTCTGTGCTCCAGCAG CACGCGGAGGCCAATGGGGTGGATGGCGTGGACGCCCTGGACACAGCCTCCCACACCACT AAAAGCGGTTATCACGATGACTCAGATGAGGACCTCCTGGAATAGCTCCTCAAAGGAGCT GGGACCAAGCATGGATGATGGAACCGCAGTACCTCCTACACTCCCTGTGGCTCCGACTTG GGGAAATAAATTCCCATTGCAAGGGACCCAGCTCTGTTTCTGCTGCTTCCATCAAAGCCA AAAGGACCTACACTAAAGAAATGGGGGCGGTGGGGGGCGCTAAACACTCTTAAAATTGGC TCTGAGAAGAGAGGGAAATTTTTTAATCCTTTAACTTTTCATTTTGAGTTCTGTCTTTTT GCAGGGCATGGGCCTTTTTGGTTTGGGTTTTGGTTTTGAAGGGAAATGAAATGGAAATGA AGGGAACTTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 336-1866, - strand, RNAz p=0.879889 | |
| 599-694, + strand, RNAz p=0.867731 | |
| 855-1051, + strand, RNAz p=0.800589 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 336-1866, - strand, RNAz p=0.879889 | |
| 599-694, + strand, RNAz p=0.867731 | |
| 855-1051, + strand, RNAz p=0.800589 |
| Aligned organism(s): 77 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
| 62-193, gnl|bosTau2|chr3 (26091027-26091158) | |
| 62-193, gnl|canFam2|chr6 (45555728-45555601) | |
| 62-193, gnl|danRer3|chr11 (38516989-38516865) | |
| 62-193, gnl|dasNov1|scaffold_2090 (34337-34464) | |
| 62-193, gnl|echTel1|scaffold_17015 (1113-986) | |
| 62-193, gnl|fr1|chrUn (75236719-75236592) | |
| 62-193, gnl|hg17|chr1 (109600408-109600535) | |
| 62-193, gnl|Hg17|chr1 (109600545-109600414) | |
| 62-193, gnl|mm7|chr3 (108152993-108152866) | |
| 62-193, gnl|Mm7|chr3 (108152854-108152985) | |
| 62-193, gnl|monDom2|scaffold_0 (7312058-7311931) | |
| 62-193, gnl|oryCun1|scaffold_198736 (25153-25280) | |
| 62-193, gnl|panTro1|chr1_random (4358049-4357922) | |
| 62-193, gnl|rheMac2|chr1 (112401675-112401802) | |
| 62-193, gnl|rn3|chr2 (203865353-203865230) | |
| 62-193, gnl|tetNig1|chr9 (2951586-2951461) | |
| 336-517, gnl|bosTau2|chr3 (26095300-26095483) | |
| 336-517, gnl|Hg17|chr1 (109595545-109595337) | |
| 336-517, gnl|Mm7|chr3 (108157097-108157298) | |
| 599-706, gnl|bosTau2|chr3 (30461211-30461318) | |
| 599-706, gnl|canFam2|chr6 (45565246-45565108) | |
| 599-706, gnl|danRer3|chr11 (38521734-38521601) | |
| 599-706, gnl|echTel1|scaffold_289808 (38882-39023) | |
| 599-706, gnl|fr1|chrUn (75237704-75237565) | |
| 599-706, gnl|hg17|chr1 (109582141-109582279) | |
| 599-706, gnl|Hg17|chr1 (109582267-109582160) | |
| 599-706, gnl|loxAfr1|scaffold_1838 (147480-147619) | |
| 599-706, gnl|mm7|chr3 (108163269-108163130) | |
| 599-706, gnl|Mm7|chr3 (108163140-108163247) | |
| 599-706, gnl|monDom2|scaffold_0 (7319211-7319074) | |
| 599-706, gnl|oryCun1|scaffold_142108 (897-1036) | |
| 599-706, gnl|panTro1|chr1 (108507077-108507215) | |
| 599-706, gnl|rheMac2|chr1 (112383367-112383505) | |
| 599-706, gnl|rn3|chr2 (203877533-203877393) | |
| 599-706, gnl|tetNig1|chr9 (2952879-2952760) | |
| 599-706, gnl|xenTro1|scaffold_19 (1863419-1863544) | |
| 855-1067, gnl|bosTau2|chr3 (30462396-30462610) | |
| 855-1067, gnl|canFam2|chr6 (45566483-45566251) | |
| 855-1067, gnl|danRer3|chr11 (38524892-38524663) | |
| 855-1067, gnl|dasNov1|scaffold_2090 (24433-24665) | |
| 855-1067, gnl|echTel1|scaffold_289808 (37522-37753) | |
| 855-1067, gnl|fr1|chrUn (75238201-75238003) | |
| 855-1067, gnl|hg17|chr1 (109579551-109579783) | |
| 855-1067, gnl|Hg17|chr1 (109579773-109579559) | |
| 855-1067, gnl|loxAfr1|scaffold_1838 (145857-146089) | |
| 855-1067, gnl|mm7|chr3 (108165149-108164917) | |
| 855-1067, gnl|Mm7|chr3 (108164925-108165139) | |
| 855-1067, gnl|monDom2|scaffold_0 (7320513-7320282) | |
| 855-1067, gnl|oryCun1|scaffold_198736 (9710-9942) | |
| 855-1067, gnl|panTro1|chr1 (108504498-108504730) | |
| 855-1067, gnl|rheMac2|chr1 (112380991-112381223) | |
| 855-1067, gnl|rn3|chr2 (203879354-203879122) | |
| 855-1067, gnl|tetNig1|chr9 (2953575-2953376) | |
| 855-1067, gnl|xenTro1|scaffold_19 (1857948-1858171) | |
| 1253-1372, gnl|bosTau2|chr3 (30470001-30470120) | |
| 1253-1372, gnl|Hg17|chr1 (109572634-109572515) | |
| 1253-1372, gnl|Mm7|chr3 (108169959-108170078) | |
| 1478-1588, gnl|bosTau2|chr3 (30472224-30472334) | |
| 1478-1588, gnl|canFam2|chr6 (45575122-45575030) | |
| 1478-1588, gnl|danRer3|chr11 (38529393-38529321) | |
| 1478-1588, gnl|dasNov1|scaffold_2090 (16618-16710) | |
| 1478-1588, gnl|fr1|chrUn (75239251-75239176) | |
| 1478-1588, gnl|hg17|chr1 (109569318-109569410) | |
| 1478-1588, gnl|Hg17|chr1 (109569444-109569334) | |
| 1478-1588, gnl|loxAfr1|scaffold_1838 (138156-138248) | |
| 1478-1588, gnl|mm7|chr3 (108174645-108174553) | |
| 1478-1588, gnl|Mm7|chr3 (108174517-108174627) | |
| 1478-1588, gnl|monDom2|scaffold_0 (7328322-7328217) | |
| 1478-1588, gnl|oryCun1|scaffold_206851 (71955-71867) | |
| 1478-1588, gnl|panTro1|chr1 (108494269-108494361) | |
| 1478-1588, gnl|rheMac2|chr1 (112370130-112370222) | |
| 1478-1588, gnl|rn3|chr2 (203889213-203889121) | |
| 1478-1588, gnl|tetNig1|chr9 (2955289-2955214) | |
| 1478-1588, gnl|xenTro1|scaffold_19 (1852233-1852323) | |
| 1709-2052, gnl|bosTau2|chr3 (30472940-30473272) | |
| 1709-2052, gnl|Hg17|chr1 (109568723-109568379) | |
| 1709-2052, gnl|Mm7|chr3 (108175515-108175867) |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-193, gnl|bosTau2|chr3 (26091027-26091158) | |
| 62-193, gnl|canFam2|chr6 (45555728-45555601) | |
| 62-193, gnl|danRer3|chr11 (38516989-38516865) | |
| 62-193, gnl|dasNov1|scaffold_2090 (34337-34464) | |
| 62-193, gnl|echTel1|scaffold_17015 (1113-986) | |
| 62-193, gnl|fr1|chrUn (75236719-75236592) | |
| 62-193, gnl|hg17|chr1 (109600408-109600535) | |
| 62-193, gnl|Hg17|chr1 (109600545-109600414) | |
| 62-193, gnl|mm7|chr3 (108152993-108152866) | |
| 62-193, gnl|Mm7|chr3 (108152854-108152985) | |
| 62-193, gnl|monDom2|scaffold_0 (7312058-7311931) | |
| 62-193, gnl|oryCun1|scaffold_198736 (25153-25280) | |
| 62-193, gnl|panTro1|chr1_random (4358049-4357922) | |
| 62-193, gnl|rheMac2|chr1 (112401675-112401802) | |
| 62-193, gnl|rn3|chr2 (203865353-203865230) | |
| 62-193, gnl|tetNig1|chr9 (2951586-2951461) | |
| 336-517, gnl|bosTau2|chr3 (26095300-26095483) | |
| 336-517, gnl|Hg17|chr1 (109595545-109595337) | |
| 336-517, gnl|Mm7|chr3 (108157097-108157298) | |
| 599-706, gnl|bosTau2|chr3 (30461211-30461318) | |
| 599-706, gnl|canFam2|chr6 (45565246-45565108) | |
| 599-706, gnl|danRer3|chr11 (38521734-38521601) | |
| 599-706, gnl|echTel1|scaffold_289808 (38882-39023) | |
| 599-706, gnl|fr1|chrUn (75237704-75237565) | |
| 599-706, gnl|hg17|chr1 (109582141-109582279) | |
| 599-706, gnl|Hg17|chr1 (109582267-109582160) | |
| 599-706, gnl|loxAfr1|scaffold_1838 (147480-147619) | |
| 599-706, gnl|mm7|chr3 (108163269-108163130) | |
| 599-706, gnl|Mm7|chr3 (108163140-108163247) | |
| 599-706, gnl|monDom2|scaffold_0 (7319211-7319074) | |
| 599-706, gnl|oryCun1|scaffold_142108 (897-1036) | |
| 599-706, gnl|panTro1|chr1 (108507077-108507215) | |
| 599-706, gnl|rheMac2|chr1 (112383367-112383505) | |
| 599-706, gnl|rn3|chr2 (203877533-203877393) | |
| 599-706, gnl|tetNig1|chr9 (2952879-2952760) | |
| 599-706, gnl|xenTro1|scaffold_19 (1863419-1863544) | |
| 855-1067, gnl|bosTau2|chr3 (30462396-30462610) | |
| 855-1067, gnl|canFam2|chr6 (45566483-45566251) | |
| 855-1067, gnl|danRer3|chr11 (38524892-38524663) | |
| 855-1067, gnl|dasNov1|scaffold_2090 (24433-24665) | |
| 855-1067, gnl|echTel1|scaffold_289808 (37522-37753) | |
| 855-1067, gnl|fr1|chrUn (75238201-75238003) | |
| 855-1067, gnl|hg17|chr1 (109579551-109579783) | |
| 855-1067, gnl|Hg17|chr1 (109579773-109579559) | |
| 855-1067, gnl|loxAfr1|scaffold_1838 (145857-146089) | |
| 855-1067, gnl|mm7|chr3 (108165149-108164917) | |
| 855-1067, gnl|Mm7|chr3 (108164925-108165139) | |
| 855-1067, gnl|monDom2|scaffold_0 (7320513-7320282) | |
| 855-1067, gnl|oryCun1|scaffold_198736 (9710-9942) | |
| 855-1067, gnl|panTro1|chr1 (108504498-108504730) | |
| 855-1067, gnl|rheMac2|chr1 (112380991-112381223) | |
| 855-1067, gnl|rn3|chr2 (203879354-203879122) | |
| 855-1067, gnl|tetNig1|chr9 (2953575-2953376) | |
| 855-1067, gnl|xenTro1|scaffold_19 (1857948-1858171) | |
| 1253-1372, gnl|bosTau2|chr3 (30470001-30470120) | |
| 1253-1372, gnl|Hg17|chr1 (109572634-109572515) | |
| 1253-1372, gnl|Mm7|chr3 (108169959-108170078) | |
| 1478-1588, gnl|bosTau2|chr3 (30472224-30472334) | |
| 1478-1588, gnl|canFam2|chr6 (45575122-45575030) | |
| 1478-1588, gnl|danRer3|chr11 (38529393-38529321) | |
| 1478-1588, gnl|dasNov1|scaffold_2090 (16618-16710) | |
| 1478-1588, gnl|fr1|chrUn (75239251-75239176) | |
| 1478-1588, gnl|hg17|chr1 (109569318-109569410) | |
| 1478-1588, gnl|Hg17|chr1 (109569444-109569334) | |
| 1478-1588, gnl|loxAfr1|scaffold_1838 (138156-138248) | |
| 1478-1588, gnl|mm7|chr3 (108174645-108174553) | |
| 1478-1588, gnl|Mm7|chr3 (108174517-108174627) | |
| 1478-1588, gnl|monDom2|scaffold_0 (7328322-7328217) | |
| 1478-1588, gnl|oryCun1|scaffold_206851 (71955-71867) | |
| 1478-1588, gnl|panTro1|chr1 (108494269-108494361) | |
| 1478-1588, gnl|rheMac2|chr1 (112370130-112370222) | |
| 1478-1588, gnl|rn3|chr2 (203889213-203889121) | |
| 1478-1588, gnl|tetNig1|chr9 (2955289-2955214) | |
| 1478-1588, gnl|xenTro1|scaffold_19 (1852233-1852323) | |
| 1709-2052, gnl|bosTau2|chr3 (30472940-30473272) | |
| 1709-2052, gnl|Hg17|chr1 (109568723-109568379) | |
| 1709-2052, gnl|Mm7|chr3 (108175515-108175867) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| hyp (0.285673) | |
| clu (0.239292) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ton (0.1755) | |
| cut (0.169924) | |
| nco (0.161734) | |
| ute (0.132784) | |
| eru (0.120048) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| clu (0.239292) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ton (0.1755) | |
| cut (0.169924) | |
| nco (0.161734) | |
| ute (0.132784) | |
| eru (0.120048) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |