Non-Coding RNA Search

Ss1.1-Utr1-UTR010033A09.5.5

Sequence:


               
               TCCGCCCGCACGTCGCCCGGTGTCCGCGCCATGGCGTCCGGCCCGCTGCTGCCGCGGCTG
CTCGGCGCAGGTGCCCCGCGCAGGCCGCTCCGGCTGCACCTCGTCCCGACGGCGACCCCC
GGCCCGGCCGGGCCGACGGGCAGGACGCTGGGGAGCAACGCGGCCCCCGCCGCCCGCGAG
CCCGAGCTCGGCAACGATCTCAGGGACAGGATCCTCAGCGAGCCTCTCAAGCACGCCGAC
TTCTTCAACCTCAAGGAGCTGTTCTCCGTGAGAAGTCTCTTCGACGCCCGGGTGCACCTG
GGACACAAAGCCGGCTGTCGACACAGGTTCATGGAGCCGTACCTCTTCGGGAGCCGCCTG
GGCCAGGACATCATTGACCTGGAGCAGACGGCCGCACACCTGCAGCTGGCCTTGAATTTC
ACGGCCCACGTCGCGTACCGCGAGGGCATCATCCTGTTCGTGAGCCGGCACCGGCAGTTC
GCCCACCTCATCGAGACCACCGCCCGGGACTGCGGCGAGTACGCGCACACCCGCTACTTC
AAGGGCGGCCTGCTGACCAACGCGCCCCTCCTCCTGGGCCCCGGGGTCCGCCTGCCCGAC
CTCATCATCTTCCTGCACACGCTCAACAACGTCTTCGAGCCCCACGTGGCCGTGAGGGAC
GCGGCCAAGATGAACATCCCCACGGTGGGCATCGTGGACACCAACTGCAACCCCGCGCTC
ATCACCTACCCCGTGCCCGGCAACGACGACTCGCCGCCGGCCGTCCGCCTCTTCTGCAGG
CTCTTCCAGGTCGCCATCAGCCGGGCCAAGGAGAAGCGCAGGCAGGTCGAGGCCCTGTAC
CGGCTGCAGGGCCCGGCAGGGGCGGAGCGCGGCCCGGCGGCCCCCCCGCCCCCCGAATGA
ACCGGCAGCCGAGCGGCTTCCCGGGCTGCGAGAGCCCTGGGGCCGCTGCGCTGCCCGGTG
GGTCCAGGCCTGGCGTCTCTGCCGCCAGGAACGGTTCTCAGCAGCTGCCGCCCGCCCGGT
GCCCAGGCTCCCCCTCCATCCTCGGCCCCGCGGACTCGCAGGGCAGGCGGCCTGTCCCCG
GAGCCCGAGATCCCTGCTTCTACCCTGAGACGGTGCCTTGCGTGTCAGGAAGGCTCCCAC
GCCAGGCCGACTTTTCTTCTCCACCCGAACCCCCTCGGCTGGGCTGCTTCCCCTGCCGCC
TGGTTTCTTTTGCAAGGTTGCAGGAAGATTCCGTCTGGGTTGGGCCAGGCCAGGCAGACA
GGACGATTCCAACAGCAATAAAACTTGATTTGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGCCCGCACGTCGCCCGGTGTCCGCGCCATGGCGTCCGGCCCGCTGCTGCCGCGGCTG
CTCGGCGCAGGTGCCCCGCGCAGGCCGCTCCGGCTGCACCTCGTCCCGACGGCGACCCCC
GGCCCGGCCGGGCCGACGGGCAGGACGCTGGGGAGCAACGCGGCCCCCGCCGCCCGCGAG
CCCGAGCTCGGCAACGATCTCAGGGACAGGATCCTCAGCGAGCCTCTCAAGCACGCCGAC
TTCTTCAACCTCAAGGAGCTGTTCTCCGTGAGAAGTCTCTTCGACGCCCGGGTGCACCTG
GGACACAAAGCCGGCTGTCGACACAGGTTCATGGAGCCGTACCTCTTCGGGAGCCGCCTG
GGCCAGGACATCATTGACCTGGAGCAGACGGCCGCACACCTGCAGCTGGCCTTGAATTTC
ACGGCCCACGTCGCGTACCGCGAGGGCATCATCCTGTTCGTGAGCCGGCACCGGCAGTTC
GCCCACCTCATCGAGACCACCGCCCGGGACTGCGGCGAGTACGCGCACACCCGCTACTTC
AAGGGCGGCCTGCTGACCAACGCGCCCCTCCTCCTGGGCCCCGGGGTCCGCCTGCCCGAC
CTCATCATCTTCCTGCACACGCTCAACAACGTCTTCGAGCCCCACGTGGCCGTGAGGGAC
GCGGCCAAGATGAACATCCCCACGGTGGGCATCGTGGACACCAACTGCAACCCCGCGCTC
ATCACCTACCCCGTGCCCGGCAACGACGACTCGCCGCCGGCCGTCCGCCTCTTCTGCAGG
CTCTTCCAGGTCGCCATCAGCCGGGCCAAGGAGAAGCGCAGGCAGGTCGAGGCCCTGTAC
CGGCTGCAGGGCCCGGCAGGGGCGGAGCGCGGCCCGGCGGCCCCCCCGCCCCCCGAATGA
ACCGGCAGCCGAGCGGCTTCCCGGGCTGCGAGAGCCCTGGGGCCGCTGCGCTGCCCGGTG
GGTCCAGGCCTGGCGTCTCTGCCGCCAGGAACGGTTCTCAGCAGCTGCCGCCCGCCCGGT
GCCCAGGCTCCCCCTCCATCCTCGGCCCCGCGGACTCGCAGGGCAGGCGGCCTGTCCCCG
GAGCCCGAGATCCCTGCTTCTACCCTGAGACGGTGCCTTGCGTGTCAGGAAGGCTCCCAC
GCCAGGCCGACTTTTCTTCTCCACCCGAACCCCCTCGGCTGGGCTGCTTCCCCTGCCGCC
TGGTTTCTTTTGCAAGGTTGCAGGAAGATTCCGTCTGGGTTGGGCCAGGCCAGGCAGACA
GGACGATTCCAACAGCAATAAAACTTGATTTGGGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55632591|ref|XP_520354.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55632591|ref|XP_520354.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               324-851, gnl|bosTau2|chr11 (86109021-86109548)
               

               
               324-851, gnl|Hg17|chr9 (135621330-135621857)
               

               
               324-851, gnl|Mm7|chr2 (28476731-28477258)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               324-851, gnl|bosTau2|chr11 (86109021-86109548)
               

               
               324-851, gnl|Hg17|chr9 (135621330-135621857)
               

               
               324-851, gnl|Mm7|chr2 (28476731-28477258)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ebs (0.354904)
               

               
               ill (0.175593)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               ill (0.175593)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	324-851, gnl\|bosTau2\|chr11 (86109021-86109548)
	324-851, gnl\|Hg17\|chr9 (135621330-135621857)
	324-851, gnl\|Mm7\|chr2 (28476731-28477258)

	ebs (0.354904)
	ill (0.175593)
	ute (0.132784)
	med (0.116252)
	ecc (0.115035)