Ss1.1-Utr1-UTR010033A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTGGAAGTCCGGGCTCGCGGCGAGCGGGGAGGTGGGCTGGAGTCGCAGGTGTGAGGGC TAGAGCCTCACGCGGGTAAAGGGCGGTGATTAAGAGAGTGAGGACCAGGAGCGCTTAGCG GCGCGCTCTGCGCAGTGGCGATGCAGACGTAGGAAACGCCCCGCCCTGCGCGGGAGCCCT CGGGACGCCATGGCGCGAGCTCGGAAGAGGCTGGCGGGTGCCGCTGGGCCAGACAAGAAG GGGCCAGAAGGAAAACGGACTAAAACAAAGAACGAGTGTGAGGCATCTGCTAAAGTGGAG AACTCCGGCCTCCAGGAGACTTCAGAAGCCTCTGAAGACTGTGGGAAGAATCTCAACAGA TACTGGCTGATGAAGTCAGAGCCAGAAAGCCGACTGGAGAAAGGTGTAGACGTGAAGTTC AGCATTGAGGATCTCAAAGCACAGCCCAAGCAGACAACATGCTGGGATGGTGTCCGCAAC TACCAGGCCCGGAACTTCCTCAGAGCCATGAAGCTGGAGGAAGACGCCTTCTTCTACCAT AGCAACTGCAGAAAGCCAGGCATCGCAGGGCTTATGAAGATTGTGAAGGAGGCTTACCCA GACCACACACAGTTTGAGAAGAACAGTCCCCATTATGATCCATCCAGCAAAGAAGACAAC CCGAAATGGTCCATGGTGGACGTACAGTTTGTTCGGATGATGAAGCGTTTCATTCCCCTG GCTGAGCTCAAAACCCATCACCAAGCTCATAGAGCCACTGGTGGTCCCTTAAAAAACATG GTTCTCTTCACTCGCCAGAGACTCTCTGTCCAACCCCTGACCCGAGAGGAGTTTGACTTT ATTTTGAGCCTGGAGGAAAAGGAACCAAGTTAACTGAGATGCTGCTGCTAGAATAGGCAA GACGCTGCTCTAGAGATGTCCAGCTGCCACAAGACAAGCAGGCGTGGGGAGCGTGCTTGT TATGTTCACCCGGGGTTGTATGCTGAGGTGGGGTTTGAGTACTTTGAATAAAACATGAAT ATATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCCCCTTCTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTGGAAGTCCGGGCTCGCGGCGAGCGGGGAGGTGGGCTGGAGTCGCAGGTGTGAGGGC TAGAGCCTCACGCGGGTAAAGGGCGGTGATTAAGAGAGTGAGGACCAGGAGCGCTTAGCG GCGCGCTCTGCGCAGTGGCGATGCAGACGTAGGAAACGCCCCGCCCTGCGCGGGAGCCCT CGGGACGCCATGGCGCGAGCTCGGAAGAGGCTGGCGGGTGCCGCTGGGCCAGACAAGAAG GGGCCAGAAGGAAAACGGACTAAAACAAAGAACGAGTGTGAGGCATCTGCTAAAGTGGAG AACTCCGGCCTCCAGGAGACTTCAGAAGCCTCTGAAGACTGTGGGAAGAATCTCAACAGA TACTGGCTGATGAAGTCAGAGCCAGAAAGCCGACTGGAGAAAGGTGTAGACGTGAAGTTC AGCATTGAGGATCTCAAAGCACAGCCCAAGCAGACAACATGCTGGGATGGTGTCCGCAAC TACCAGGCCCGGAACTTCCTCAGAGCCATGAAGCTGGAGGAAGACGCCTTCTTCTACCAT AGCAACTGCAGAAAGCCAGGCATCGCAGGGCTTATGAAGATTGTGAAGGAGGCTTACCCA GACCACACACAGTTTGAGAAGAACAGTCCCCATTATGATCCATCCAGCAAAGAAGACAAC CCGAAATGGTCCATGGTGGACGTACAGTTTGTTCGGATGATGAAGCGTTTCATTCCCCTG GCTGAGCTCAAAACCCATCACCAAGCTCATAGAGCCACTGGTGGTCCCTTAAAAAACATG GTTCTCTTCACTCGCCAGAGACTCTCTGTCCAACCCCTGACCCGAGAGGAGTTTGACTTT ATTTTGAGCCTGGAGGAAAAGGAACCAAGTTAACTGAGATGCTGCTGCTAGAATAGGCAA GACGCTGCTCTAGAGATGTCCAGCTGCCACAAGACAAGCAGGCGTGGGGAGCGTGCTTGT TATGTTCACCCGGGGTTGTATGCTGAGGTGGGGTTTGAGTACTTTGAATAAAACATGAAT ATATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCCCCTTCTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 269-422, - strand, RNAz p=0.997657 | |
| 714-831, - strand, RNAz p=0.656173 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 269-422, - strand, RNAz p=0.997657 | |
| 714-831, - strand, RNAz p=0.656173 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 230-422, gnl|bosTau2|chr15 (53470204-53470015) | |
| 230-422, gnl|Hg17|chr11 (133626415-133626229) | |
| 230-422, gnl|Mm7|chr9 (26886595-26886784) | |
| 471-579, gnl|bosTau2|chr15 (53468695-53468588) | |
| 471-579, gnl|canFam2|chr5 (3996083-3995950) | |
| 471-579, gnl|danRer3|chr15 (9446685-9446794) | |
| 471-579, gnl|fr1|chrUn (15906570-15906676) | |
| 471-579, gnl|galGal2|chr24 (2491002-2491105) | |
| 471-579, gnl|hg17|chr11 (133624908-133625041) | |
| 471-579, gnl|Hg17|chr11 (133625037-133624932) | |
| 471-579, gnl|loxAfr1|scaffold_583 (97166-97032) | |
| 471-579, gnl|mm7|chr9 (26888676-26888544) | |
| 471-579, gnl|Mm7|chr9 (26888546-26888650) | |
| 471-579, gnl|monDom2|scaffold_15 (25034583-25034714) | |
| 471-579, gnl|oryCun1|scaffold_176389 (38274-38409) | |
| 471-579, gnl|panTro1|chr9 (135861867-135862000) | |
| 471-579, gnl|rheMac2|chr14 (132254009-132254144) | |
| 471-579, gnl|rn3|chr8_random (225841-225709) | |
| 471-579, gnl|tetNig1|chr16 (2845046-2844928) | |
| 471-579, gnl|xenTro1|scaffold_328 (241635-241534) | |
| 675-831, gnl|bosTau2|chr15 (53467857-53467701) | |
| 675-831, gnl|canFam2|chr5 (3997464-3997305) | |
| 675-831, gnl|danRer3|chr15 (9446294-9446450) | |
| 675-831, gnl|dasNov1|scaffold_298246 (788-629) | |
| 675-831, gnl|echTel1|scaffold_323962 (113193-113336) | |
| 675-831, gnl|fr1|chrUn (15906184-15906341) | |
| 675-831, gnl|galGal2|chr24 (2489474-2489631) | |
| 675-831, gnl|hg17|chr11 (133623909-133624068) | |
| 675-831, gnl|Hg17|chr11 (133624064-133623908) | |
| 675-831, gnl|loxAfr1|scaffold_583 (98213-98054) | |
| 675-831, gnl|mm7|chr9 (26889958-26889799) | |
| 675-831, gnl|Mm7|chr9 (26889801-26889955) | |
| 675-831, gnl|monDom2|scaffold_15 (25033521-25033680) | |
| 675-831, gnl|oryCun1|scaffold_176389 (37220-37379) | |
| 675-831, gnl|panTro1|chr9 (135860874-135861033) | |
| 675-831, gnl|rheMac2|chr14 (132252685-132252844) | |
| 675-831, gnl|rn3|chr8_random (227299-227140) | |
| 675-831, gnl|tetNig1|chr16 (2845412-2845253) | |
| 675-831, gnl|xenTro1|scaffold_328 (243828-243670) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 230-422, gnl|bosTau2|chr15 (53470204-53470015) | |
| 230-422, gnl|Hg17|chr11 (133626415-133626229) | |
| 230-422, gnl|Mm7|chr9 (26886595-26886784) | |
| 471-579, gnl|bosTau2|chr15 (53468695-53468588) | |
| 471-579, gnl|canFam2|chr5 (3996083-3995950) | |
| 471-579, gnl|danRer3|chr15 (9446685-9446794) | |
| 471-579, gnl|fr1|chrUn (15906570-15906676) | |
| 471-579, gnl|galGal2|chr24 (2491002-2491105) | |
| 471-579, gnl|hg17|chr11 (133624908-133625041) | |
| 471-579, gnl|Hg17|chr11 (133625037-133624932) | |
| 471-579, gnl|loxAfr1|scaffold_583 (97166-97032) | |
| 471-579, gnl|mm7|chr9 (26888676-26888544) | |
| 471-579, gnl|Mm7|chr9 (26888546-26888650) | |
| 471-579, gnl|monDom2|scaffold_15 (25034583-25034714) | |
| 471-579, gnl|oryCun1|scaffold_176389 (38274-38409) | |
| 471-579, gnl|panTro1|chr9 (135861867-135862000) | |
| 471-579, gnl|rheMac2|chr14 (132254009-132254144) | |
| 471-579, gnl|rn3|chr8_random (225841-225709) | |
| 471-579, gnl|tetNig1|chr16 (2845046-2844928) | |
| 471-579, gnl|xenTro1|scaffold_328 (241635-241534) | |
| 675-831, gnl|bosTau2|chr15 (53467857-53467701) | |
| 675-831, gnl|canFam2|chr5 (3997464-3997305) | |
| 675-831, gnl|danRer3|chr15 (9446294-9446450) | |
| 675-831, gnl|dasNov1|scaffold_298246 (788-629) | |
| 675-831, gnl|echTel1|scaffold_323962 (113193-113336) | |
| 675-831, gnl|fr1|chrUn (15906184-15906341) | |
| 675-831, gnl|galGal2|chr24 (2489474-2489631) | |
| 675-831, gnl|hg17|chr11 (133623909-133624068) | |
| 675-831, gnl|Hg17|chr11 (133624064-133623908) | |
| 675-831, gnl|loxAfr1|scaffold_583 (98213-98054) | |
| 675-831, gnl|mm7|chr9 (26889958-26889799) | |
| 675-831, gnl|Mm7|chr9 (26889801-26889955) | |
| 675-831, gnl|monDom2|scaffold_15 (25033521-25033680) | |
| 675-831, gnl|oryCun1|scaffold_176389 (37220-37379) | |
| 675-831, gnl|panTro1|chr9 (135860874-135861033) | |
| 675-831, gnl|rheMac2|chr14 (132252685-132252844) | |
| 675-831, gnl|rn3|chr8_random (227299-227140) | |
| 675-831, gnl|tetNig1|chr16 (2845412-2845253) | |
| 675-831, gnl|xenTro1|scaffold_328 (243828-243670) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| ecc (0.46014) | |
| che (0.408942) | |
| nlu (0.383362) | |
| sin (0.349895) | |
| cje (0.330469) | |
| lun (0.300978) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cly (0.241284) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| med (0.232504) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cag (0.151194) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| kid (0.129735) | |
| ebs (0.118301) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.46014) | |
| che (0.408942) | |
| nlu (0.383362) | |
| sin (0.349895) | |
| cje (0.330469) | |
| lun (0.300978) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cly (0.241284) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| med (0.232504) | |
| ece (0.229305) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cag (0.151194) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| kid (0.129735) | |
| ebs (0.118301) |