Ss1.1-Utr1-UTR010033B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCATCAAGATGGCGGCGAGCCTGCGGAAACGCGGCCGGGCAGGTCCCGCAGCCCTGGC GGCGGGACAGTGCGGGCAATGGCTGCGGCGCGCCTGGCAAGAGCGGCGCCTACTACTGCT GGAGCCACGCTACACGCTGCTGGTGGCCGCCTGCCTCTGCTTGGCGGAGGTGGGCATCAC CTTCTGGGTCATTCACAGGGTGGCATATACAGAGATTGACTGGAAGGCCTACATGGCTGA GGTGGAGGGCGTCATCAATGGCACCTATGACTATACTCAACTGCAGGGCGACACTGGACC TCTTGTGTACCCAGCCGGCTTTGTGTATATCTTTATGGGGCTATACTATGCTACGGGCCG GGGCACTGACATCCGCACGGCCCAGCACATCTTTGCTGTGCTCTACCTGGCCACCTTGCT GCTTGTCTTCTTGATTTACCACCAGACCTGCAAGGTACCTCCCTTCGTCTTTTTCTTCAT GTGCTGTGCCTCTTACCGTGTCCACTCCATCTTCGTGCTGCGGCTCTTCAACGACCCAGT GGCCATGGCACTGCTCTTCCTCAGTATCAACCTCCTGCTGGCCCAGCGCTGGGGCTGGGG CTGCTGCTGTTTCAGCCTGGCGGTGTCTGTGAAGATGAACGTGCTACTCTTTGCCCCTGG GTTACTGTTCCTTCTCCTCACACAATTCGGCCTCCGTGGGGCCCTCCCCAAGCTGGGCAT CTGTGCTGTCCTTCAGGTGGTGCTGGGGCTACCCTTCCTGCTGGAGAACCCCATCGGCTA CCTGTCCCGCTCGTTTGACCTTGGCCGCCAGTTTCTCTTCCGCTGGACCGTGAACTGGCG TTTCCTCCCCGAAGCGCTTTTCCTGCATCGTGCCTTCCACCTGGCACTTTTGACTGCCCA CCTCACCCTGCTGTTGCTCTTTACCCTCTGCAGGTGGCACAGGACAGGGGAAAGTATCCT GTCGCTGCTGAAGGATCCCTCCAAAAGGAAGGTTCCACCCCAACCCCTCACTCCCAATCA GATTGTTTCTACCCTCTTCACCTCCAACTTCATTGGCATCTGCTTCAGCCGGTCGCTTCA CTACCAGTTCTACGTCTGGTATTTCCACACACTGCCCTACCTCCTGTGGGCCACGCCTGC ACGCTGGCTCACACATCTGCTCAGGTTGCTGGTGCTGGGGCTCATTGAGCTCTCCTGGAA CACATACCCATCCACGTCCTGCAGCTCTGCTGCCCTGCACGTGTGCCATGCTGTCATCCT GCTGCAGCTCTGGCTGGGCCCCCAGCCTTTCCCCAAGACCATCCAGCACAGCAAGAAAGC CCACTGAGATCCACCTCTTCCTCTCCAGCCCATTCTCAGGACCCTGGATGGGGATGGACT CTGTACCCTTCCCAATAAACCTTACGAAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAGGGGGGGGGGCCCTTTAAAAATTCCCCGGGGGGGGGCCAAATTTACCCCCCC CCCTTTTTTTTTAAAAAAGGGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCATCAAGATGGCGGCGAGCCTGCGGAAACGCGGCCGGGCAGGTCCCGCAGCCCTGGC GGCGGGACAGTGCGGGCAATGGCTGCGGCGCGCCTGGCAAGAGCGGCGCCTACTACTGCT GGAGCCACGCTACACGCTGCTGGTGGCCGCCTGCCTCTGCTTGGCGGAGGTGGGCATCAC CTTCTGGGTCATTCACAGGGTGGCATATACAGAGATTGACTGGAAGGCCTACATGGCTGA GGTGGAGGGCGTCATCAATGGCACCTATGACTATACTCAACTGCAGGGCGACACTGGACC TCTTGTGTACCCAGCCGGCTTTGTGTATATCTTTATGGGGCTATACTATGCTACGGGCCG GGGCACTGACATCCGCACGGCCCAGCACATCTTTGCTGTGCTCTACCTGGCCACCTTGCT GCTTGTCTTCTTGATTTACCACCAGACCTGCAAGGTACCTCCCTTCGTCTTTTTCTTCAT GTGCTGTGCCTCTTACCGTGTCCACTCCATCTTCGTGCTGCGGCTCTTCAACGACCCAGT GGCCATGGCACTGCTCTTCCTCAGTATCAACCTCCTGCTGGCCCAGCGCTGGGGCTGGGG CTGCTGCTGTTTCAGCCTGGCGGTGTCTGTGAAGATGAACGTGCTACTCTTTGCCCCTGG GTTACTGTTCCTTCTCCTCACACAATTCGGCCTCCGTGGGGCCCTCCCCAAGCTGGGCAT CTGTGCTGTCCTTCAGGTGGTGCTGGGGCTACCCTTCCTGCTGGAGAACCCCATCGGCTA CCTGTCCCGCTCGTTTGACCTTGGCCGCCAGTTTCTCTTCCGCTGGACCGTGAACTGGCG TTTCCTCCCCGAAGCGCTTTTCCTGCATCGTGCCTTCCACCTGGCACTTTTGACTGCCCA CCTCACCCTGCTGTTGCTCTTTACCCTCTGCAGGTGGCACAGGACAGGGGAAAGTATCCT GTCGCTGCTGAAGGATCCCTCCAAAAGGAAGGTTCCACCCCAACCCCTCACTCCCAATCA GATTGTTTCTACCCTCTTCACCTCCAACTTCATTGGCATCTGCTTCAGCCGGTCGCTTCA CTACCAGTTCTACGTCTGGTATTTCCACACACTGCCCTACCTCCTGTGGGCCACGCCTGC ACGCTGGCTCACACATCTGCTCAGGTTGCTGGTGCTGGGGCTCATTGAGCTCTCCTGGAA CACATACCCATCCACGTCCTGCAGCTCTGCTGCCCTGCACGTGTGCCATGCTGTCATCCT GCTGCAGCTCTGGCTGGGCCCCCAGCCTTTCCCCAAGACCATCCAGCACAGCAAGAAAGC CCACTGAGATCCACCTCTTCCTCTCCAGCCCATTCTCAGGACCCTGGATGGGGATGGACT CTGTACCCTTCCCAATAAACCTTACGAAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAGGGGGGGGGGCCCTTTAAAAATTCCCCGGGGGGGGGCCAAATTTACCCCCCC CCCTTTTTTTTTAAAAAAGGGGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-206, + strand, RNAz p=0.992808 | |
| 1291-1401, - strand, RNAz p=0.741617 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-206, + strand, RNAz p=0.992808 | |
| 1291-1401, - strand, RNAz p=0.741617 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005787, + |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 1-206, gnl|bosTau2|chr1 (51221276-51221481) | |
| 1-206, gnl|Hg17|chr3 (185449440-185449235) | |
| 1-206, gnl|Mm7|chr16 (20160769-20160564) | |
| 446-615, gnl|bosTau2|chr1 (51223780-51223949) | |
| 446-615, gnl|canFam2|chr34 (20145516-20145700) | |
| 446-615, gnl|canFam2|chr34 (20145528-20145661) | |
| 446-615, gnl|danRer3|chr2 (40065611-40065791) | |
| 446-615, gnl|dasNov1|scaffold_6962 (8037-7853) | |
| 446-615, gnl|dasNov1|scaffold_6962 (8025-7892) | |
| 446-615, gnl|echTel1|scaffold_310280 (11300-11118) | |
| 446-615, gnl|echTel1|scaffold_310280 (11289-11156) | |
| 446-615, gnl|fr1|chrUn (136027384-136027210) | |
| 446-615, gnl|fr1|chrUn (136027442-136027246) | |
| 446-615, gnl|galGal2|chr9 (15213151-15213316) | |
| 446-615, gnl|galGal2|chr9 (15213156-15213290) | |
| 446-615, gnl|hg17|chr3 (185445681-185445865) | |
| 446-615, gnl|Hg17|chr3 (185445857-185445688) | |
| 446-615, gnl|hg17|chr5 (5429552-5429669) | |
| 446-615, gnl|loxAfr1|scaffold_73625 (3333-3150) | |
| 446-615, gnl|loxAfr1|scaffold_73625 (3321-3188) | |
| 446-615, gnl|mm7|chr16 (20158500-20158683) | |
| 446-615, gnl|mm7|chr16 (20158512-20158645) | |
| 446-615, gnl|Mm7|chr16 (20158676-20158507) | |
| 446-615, gnl|monDom2|scaffold_180 (1593-1775) | |
| 446-615, gnl|monDom2|scaffold_180 (1003-1113) | |
| 446-615, gnl|oryCun1|scaffold_201926 (91337-91521) | |
| 446-615, gnl|oryCun1|scaffold_201926 (91349-91482) | |
| 446-615, gnl|panTro1|chr2 (189398267-189398451) | |
| 446-615, gnl|panTro1|chr4 (5544669-5544786) | |
| 446-615, gnl|rheMac2|chr2 (102425402-102425218) | |
| 446-615, gnl|rheMac2|chr6 (5294576-5294724) | |
| 446-615, gnl|rn3|chr11 (82589767-82589584) | |
| 446-615, gnl|rn3|chr11 (82589755-82589622) | |
| 446-615, gnl|tetNig1|chr15 (5084912-5085086) | |
| 446-615, gnl|tetNig1|chr15 (5084855-5085050) | |
| 446-615, gnl|xenTro1|scaffold_244 (206350-206536) | |
| 446-615, gnl|xenTro1|scaffold_244 (206364-206491) | |
| 733-943, gnl|bosTau2|chr1 (51224980-51225190) | |
| 733-943, gnl|canFam2|chr34 (20144280-20144502) | |
| 733-943, gnl|canFam2|chr34 (20144296-20144494) | |
| 733-943, gnl|danRer3|chr2 (40063532-40063743) | |
| 733-943, gnl|danRer3|chr2 (40063540-40063816) | |
| 733-943, gnl|dasNov1|scaffold_6962 (9232-9010) | |
| 733-943, gnl|dasNov1|scaffold_6962 (9216-9019) | |
| 733-943, gnl|echTel1|scaffold_310280 (12383-12163) | |
| 733-943, gnl|echTel1|scaffold_310280 (12369-12171) | |
| 733-943, gnl|fr1|chrUn (136027891-136027667) | |
| 733-943, gnl|fr1|chrUn (136027870-136027613) | |
| 733-943, gnl|galGal2|chr9 (15212530-15212753) | |
| 733-943, gnl|galGal2|chr9 (15212546-15212744) | |
| 733-943, gnl|hg17|chr3 (185444271-185444493) | |
| 733-943, gnl|Hg17|chr3 (185444490-185444280) | |
| 733-943, gnl|hg17|chr5 (5429226-5429424) | |
| 733-943, gnl|loxAfr1|scaffold_73625 (4449-4229) | |
| 733-943, gnl|loxAfr1|scaffold_73625 (4434-4236) | |
| 733-943, gnl|mm7|chr16 (20156771-20156993) | |
| 733-943, gnl|mm7|chr16 (20156787-20156985) | |
| 733-943, gnl|Mm7|chr16 (20156990-20156780) | |
| 733-943, gnl|monDom2|scaffold_180 (677-899) | |
| 733-943, gnl|monDom2|scaffold_180 (693-891) | |
| 733-943, gnl|oryCun1|scaffold_201926 (90149-90371) | |
| 733-943, gnl|oryCun1|scaffold_201926 (90165-90363) | |
| 733-943, gnl|panTro1|chr2 (189396782-189397004) | |
| 733-943, gnl|panTro1|chr4 (5544343-5544541) | |
| 733-943, gnl|rheMac2|chr2 (102427092-102426870) | |
| 733-943, gnl|rheMac2|chr6 (5294250-5294448) | |
| 733-943, gnl|rn3|chr11 (82591442-82591220) | |
| 733-943, gnl|rn3|chr11 (82591426-82591228) | |
| 733-943, gnl|tetNig1|chr15 (5084410-5084632) | |
| 733-943, gnl|tetNig1|chr15 (5084426-5084684) | |
| 733-943, gnl|xenTro1|scaffold_244 (203759-203978) | |
| 733-943, gnl|xenTro1|scaffold_244 (203776-203974) | |
| 1163-1401, gnl|bosTau2|chr1 (51226277-51226513) | |
| 1163-1401, gnl|Hg17|chr3 (185443168-185442926) | |
| 1163-1401, gnl|Mm7|chr16 (20155740-20155505) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-206, gnl|bosTau2|chr1 (51221276-51221481) | |
| 1-206, gnl|Hg17|chr3 (185449440-185449235) | |
| 1-206, gnl|Mm7|chr16 (20160769-20160564) | |
| 446-615, gnl|bosTau2|chr1 (51223780-51223949) | |
| 446-615, gnl|canFam2|chr34 (20145516-20145700) | |
| 446-615, gnl|canFam2|chr34 (20145528-20145661) | |
| 446-615, gnl|danRer3|chr2 (40065611-40065791) | |
| 446-615, gnl|dasNov1|scaffold_6962 (8037-7853) | |
| 446-615, gnl|dasNov1|scaffold_6962 (8025-7892) | |
| 446-615, gnl|echTel1|scaffold_310280 (11300-11118) | |
| 446-615, gnl|echTel1|scaffold_310280 (11289-11156) | |
| 446-615, gnl|fr1|chrUn (136027384-136027210) | |
| 446-615, gnl|fr1|chrUn (136027442-136027246) | |
| 446-615, gnl|galGal2|chr9 (15213151-15213316) | |
| 446-615, gnl|galGal2|chr9 (15213156-15213290) | |
| 446-615, gnl|hg17|chr3 (185445681-185445865) | |
| 446-615, gnl|Hg17|chr3 (185445857-185445688) | |
| 446-615, gnl|hg17|chr5 (5429552-5429669) | |
| 446-615, gnl|loxAfr1|scaffold_73625 (3333-3150) | |
| 446-615, gnl|loxAfr1|scaffold_73625 (3321-3188) | |
| 446-615, gnl|mm7|chr16 (20158500-20158683) | |
| 446-615, gnl|mm7|chr16 (20158512-20158645) | |
| 446-615, gnl|Mm7|chr16 (20158676-20158507) | |
| 446-615, gnl|monDom2|scaffold_180 (1593-1775) | |
| 446-615, gnl|monDom2|scaffold_180 (1003-1113) | |
| 446-615, gnl|oryCun1|scaffold_201926 (91337-91521) | |
| 446-615, gnl|oryCun1|scaffold_201926 (91349-91482) | |
| 446-615, gnl|panTro1|chr2 (189398267-189398451) | |
| 446-615, gnl|panTro1|chr4 (5544669-5544786) | |
| 446-615, gnl|rheMac2|chr2 (102425402-102425218) | |
| 446-615, gnl|rheMac2|chr6 (5294576-5294724) | |
| 446-615, gnl|rn3|chr11 (82589767-82589584) | |
| 446-615, gnl|rn3|chr11 (82589755-82589622) | |
| 446-615, gnl|tetNig1|chr15 (5084912-5085086) | |
| 446-615, gnl|tetNig1|chr15 (5084855-5085050) | |
| 446-615, gnl|xenTro1|scaffold_244 (206350-206536) | |
| 446-615, gnl|xenTro1|scaffold_244 (206364-206491) | |
| 733-943, gnl|bosTau2|chr1 (51224980-51225190) | |
| 733-943, gnl|canFam2|chr34 (20144280-20144502) | |
| 733-943, gnl|canFam2|chr34 (20144296-20144494) | |
| 733-943, gnl|danRer3|chr2 (40063532-40063743) | |
| 733-943, gnl|danRer3|chr2 (40063540-40063816) | |
| 733-943, gnl|dasNov1|scaffold_6962 (9232-9010) | |
| 733-943, gnl|dasNov1|scaffold_6962 (9216-9019) | |
| 733-943, gnl|echTel1|scaffold_310280 (12383-12163) | |
| 733-943, gnl|echTel1|scaffold_310280 (12369-12171) | |
| 733-943, gnl|fr1|chrUn (136027891-136027667) | |
| 733-943, gnl|fr1|chrUn (136027870-136027613) | |
| 733-943, gnl|galGal2|chr9 (15212530-15212753) | |
| 733-943, gnl|galGal2|chr9 (15212546-15212744) | |
| 733-943, gnl|hg17|chr3 (185444271-185444493) | |
| 733-943, gnl|Hg17|chr3 (185444490-185444280) | |
| 733-943, gnl|hg17|chr5 (5429226-5429424) | |
| 733-943, gnl|loxAfr1|scaffold_73625 (4449-4229) | |
| 733-943, gnl|loxAfr1|scaffold_73625 (4434-4236) | |
| 733-943, gnl|mm7|chr16 (20156771-20156993) | |
| 733-943, gnl|mm7|chr16 (20156787-20156985) | |
| 733-943, gnl|Mm7|chr16 (20156990-20156780) | |
| 733-943, gnl|monDom2|scaffold_180 (677-899) | |
| 733-943, gnl|monDom2|scaffold_180 (693-891) | |
| 733-943, gnl|oryCun1|scaffold_201926 (90149-90371) | |
| 733-943, gnl|oryCun1|scaffold_201926 (90165-90363) | |
| 733-943, gnl|panTro1|chr2 (189396782-189397004) | |
| 733-943, gnl|panTro1|chr4 (5544343-5544541) | |
| 733-943, gnl|rheMac2|chr2 (102427092-102426870) | |
| 733-943, gnl|rheMac2|chr6 (5294250-5294448) | |
| 733-943, gnl|rn3|chr11 (82591442-82591220) | |
| 733-943, gnl|rn3|chr11 (82591426-82591228) | |
| 733-943, gnl|tetNig1|chr15 (5084410-5084632) | |
| 733-943, gnl|tetNig1|chr15 (5084426-5084684) | |
| 733-943, gnl|xenTro1|scaffold_244 (203759-203978) | |
| 733-943, gnl|xenTro1|scaffold_244 (203776-203974) | |
| 1163-1401, gnl|bosTau2|chr1 (51226277-51226513) | |
| 1163-1401, gnl|Hg17|chr3 (185443168-185442926) | |
| 1163-1401, gnl|Mm7|chr16 (20155740-20155505) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| fbs (0.175346) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| cty (0.10408) |