Non-Coding RNA Search

Ss1.1-Utr1-UTR010033H02.5

Sequence:


               
               TTCTACACCGCCATCGGGGGCACCGTGCTCACCTTCGTCTGTGCCGTCTTCTCCGCACAG
GCAGAAATTGCCACCTCCAGCGACAAAGTACAAGAAGAAATCGAAGAGGGGAAAAACCTC
ATCTGCCTCCTTTAGTGTGGGCGAGACACTAATGCTGTTTGCTTGCTCGTGTGACCTTGT
GAAACAGTTCACGTCTGGTTTCCTCGTTTGAGTCAAGTGAAGAAGAACTAGCCTTTACCT
ACCAAAGCCACATTCCACAGCCCTGCGCCTTAACAGGACCCATGACAGGCAGCATCCAGC
TGAGCAGAGGACGGCACGCGAGGGCCACAGTGCAAATTCCAAGAGAGGGCGGATGAAAAG
GACATAAACCCTGACCCATCGTCAAGTCCTGCCGGACTCCGTCTTGCCCGCGGCTCAGTG
AAGGATGATGATCTAAACCATTGCAGCCGCAGTTTCTCTGGGAACAGAAGAGACTATGAG
CCAGATTCGCAGGCTGTTTAGAGCGGTGTTTCCGCACAGGTTGGGAGCATCTGTGCCTCA
GTGTGAGGTTTGGGGGCTGGTGTTTCTGTTTCCTCCTGGTCCTTTCCAACCGTCTCAGGC
GGAGGCTGCAAGGAAGAGCACACCCTGACGGGGGCGAGGCTGTGGGCACAGCACGACACT
GTCTCTTGCTGAGCTGGCCAAACAGGTCTGCAGCGACAGTGTGGAGTTCTGTGGTGGGAC
CTACCCTGGGCGGAATTCCAGAGTTAGGTGGCTCCACTGAGCTGTCCCTCCAAGATTTTA
GGAAGTTGAGCAAAGAAAGAATAAGGACCTGTCTGATCATGAGAATCAAAGCCCCACATC
CTGCCAGTGAAGGCAAGTTGGTTCCCCTTCCTGGCGGCCAGGCCCGGGCTCCTCTTCCCC
CTGAGATCACATGGTTTTCTTCTACGGTTAGGACTGTGCTTTGGCTGCCAAAGGAAACCT
CACTCTGCTTCCTCGTTGCAGGGACAGAGGTCCCCAGGCCAGCTGTGGCTCCTTCCCAGG
TTGACTGGGCACGCCGGCCAGAGTGGCAGCCTCTGCCCGGAGACCTTTTCCCACTGTGGT
GACTGTGCTGGGGTCAGCGCTCTTCTACCCCCAGCGGCGGCAGAACAAGTGACATTCTGT
GCAGAAAAAGGGAGCTGGTCATGAGGTTAGGTTTTTCTAGTTACGAGTGTTGATCCTGCC
AGCAAACTGTGTAATGATACCATTGAATTGCTCTAACGGGTGAGTTACATCAAAGGCTGC
ATTCTCAGGAAAGCACAGAGTAGAAAGCTCACGCACAAATGAGAGCTAGACCAGCTCAGA
GCACCCGCCTGCACCTGTTTACAAAACAGAGCGGAACGCCACTATTAAAATGGATTCAGG
GGCCTTTAGTCTAATTTCTATGCATTACCCATATAATTGATTCAGGAAAATGGTATTAGC
CGTCACTTCAGATTTACGTTGGACTGATCCAAGTGACCAAAAACAACCTAGTTTGGCCTT
AGCTGAGCTTCATTCAGCATTGCAGGATAGAGAAATCGCCCACTGCAACCGCAGCAGGTG
GGGTGGACCTGCCAGATTTCTGGAAGGATTAGAAGTATAGGTCTCTTTGGGCTTACGAAT
CTGCTTACTTGAGGGCTTGCTTTGTTTTGAAAATTCAACAGATAATTACAAACCTTGTTT
GGGCAAAGTACTAGGTGCTAAGTGCCACCAGGCATAGTACCCTGATTCAGACTTTACAGC
CCTGCCCTGAGTGAATCATCTTACAGCTCAGTGCGTTTAAAACCAGACCTTGCTACAGAA
CAGCTAATTGCTTTATATGTTCATGGAACAGAGCAACTCGAGTTTTACTCCATTCTGGCC
TCGGGCCCGTGCCAGAAACCATTTTATCTCGCAGATTAAGGGGTGGGGGCGTGGAACAAG
GTCTTCATGAGTTCACCATCCTTAGACCAAAGTTCAGAATAAGCCAGTCTATGACTTTTT
TTGAAAAGGGGTAACTTTGTAGCCCCTATGGCAGCCTGCACTAAGGGCTCAGGAAACCCT
GTACAGAAATGAATCACAGCAGCCACTGGACAGGGCTCCTGTCTGTCTGTGTATTGATAC
ATGCTAACCAAGGCCTGATGCCATGGAGTAGACTTTTTAACCCTTGGCAATAATTTTCAT
TTAAAAAAAAAAAAGAAAAGCAATTCCTGGTGTTCTCATCGTGGCTCAACAGTTAATGAA
CCCGACTAGCATCCATGAGGACGAGGGTTCGATCCCTGGCCTCGCTCAGTGGGTTGAGGA
TCCAGCATTGCCGTGAGCTGTGGTGTGGGTCGCAGATGCGGCTGGGATCCCGCGTGGCTG
TGGCTCTGGCCTAGGCTGGAAGGGATAGCTCCAATTTGACCCCAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTACACCGCCATCGGGGGCACCGTGCTCACCTTCGTCTGTGCCGTCTTCTCCGCACAG
GCAGAAATTGCCACCTCCAGCGACAAAGTACAAGAAGAAATCGAAGAGGGGAAAAACCTC
ATCTGCCTCCTTTAGTGTGGGCGAGACACTAATGCTGTTTGCTTGCTCGTGTGACCTTGT
GAAACAGTTCACGTCTGGTTTCCTCGTTTGAGTCAAGTGAAGAAGAACTAGCCTTTACCT
ACCAAAGCCACATTCCACAGCCCTGCGCCTTAACAGGACCCATGACAGGCAGCATCCAGC
TGAGCAGAGGACGGCACGCGAGGGCCACAGTGCAAATTCCAAGAGAGGGCGGATGAAAAG
GACATAAACCCTGACCCATCGTCAAGTCCTGCCGGACTCCGTCTTGCCCGCGGCTCAGTG
AAGGATGATGATCTAAACCATTGCAGCCGCAGTTTCTCTGGGAACAGAAGAGACTATGAG
CCAGATTCGCAGGCTGTTTAGAGCGGTGTTTCCGCACAGGTTGGGAGCATCTGTGCCTCA
GTGTGAGGTTTGGGGGCTGGTGTTTCTGTTTCCTCCTGGTCCTTTCCAACCGTCTCAGGC
GGAGGCTGCAAGGAAGAGCACACCCTGACGGGGGCGAGGCTGTGGGCACAGCACGACACT
GTCTCTTGCTGAGCTGGCCAAACAGGTCTGCAGCGACAGTGTGGAGTTCTGTGGTGGGAC
CTACCCTGGGCGGAATTCCAGAGTTAGGTGGCTCCACTGAGCTGTCCCTCCAAGATTTTA
GGAAGTTGAGCAAAGAAAGAATAAGGACCTGTCTGATCATGAGAATCAAAGCCCCACATC
CTGCCAGTGAAGGCAAGTTGGTTCCCCTTCCTGGCGGCCAGGCCCGGGCTCCTCTTCCCC
CTGAGATCACATGGTTTTCTTCTACGGTTAGGACTGTGCTTTGGCTGCCAAAGGAAACCT
CACTCTGCTTCCTCGTTGCAGGGACAGAGGTCCCCAGGCCAGCTGTGGCTCCTTCCCAGG
TTGACTGGGCACGCCGGCCAGAGTGGCAGCCTCTGCCCGGAGACCTTTTCCCACTGTGGT
GACTGTGCTGGGGTCAGCGCTCTTCTACCCCCAGCGGCGGCAGAACAAGTGACATTCTGT
GCAGAAAAAGGGAGCTGGTCATGAGGTTAGGTTTTTCTAGTTACGAGTGTTGATCCTGCC
AGCAAACTGTGTAATGATACCATTGAATTGCTCTAACGGGTGAGTTACATCAAAGGCTGC
ATTCTCAGGAAAGCACAGAGTAGAAAGCTCACGCACAAATGAGAGCTAGACCAGCTCAGA
GCACCCGCCTGCACCTGTTTACAAAACAGAGCGGAACGCCACTATTAAAATGGATTCAGG
GGCCTTTAGTCTAATTTCTATGCATTACCCATATAATTGATTCAGGAAAATGGTATTAGC
CGTCACTTCAGATTTACGTTGGACTGATCCAAGTGACCAAAAACAACCTAGTTTGGCCTT
AGCTGAGCTTCATTCAGCATTGCAGGATAGAGAAATCGCCCACTGCAACCGCAGCAGGTG
GGGTGGACCTGCCAGATTTCTGGAAGGATTAGAAGTATAGGTCTCTTTGGGCTTACGAAT
CTGCTTACTTGAGGGCTTGCTTTGTTTTGAAAATTCAACAGATAATTACAAACCTTGTTT
GGGCAAAGTACTAGGTGCTAAGTGCCACCAGGCATAGTACCCTGATTCAGACTTTACAGC
CCTGCCCTGAGTGAATCATCTTACAGCTCAGTGCGTTTAAAACCAGACCTTGCTACAGAA
CAGCTAATTGCTTTATATGTTCATGGAACAGAGCAACTCGAGTTTTACTCCATTCTGGCC
TCGGGCCCGTGCCAGAAACCATTTTATCTCGCAGATTAAGGGGTGGGGGCGTGGAACAAG
GTCTTCATGAGTTCACCATCCTTAGACCAAAGTTCAGAATAAGCCAGTCTATGACTTTTT
TTGAAAAGGGGTAACTTTGTAGCCCCTATGGCAGCCTGCACTAAGGGCTCAGGAAACCCT
GTACAGAAATGAATCACAGCAGCCACTGGACAGGGCTCCTGTCTGTCTGTGTATTGATAC
ATGCTAACCAAGGCCTGATGCCATGGAGTAGACTTTTTAACCCTTGGCAATAATTTTCAT
TTAAAAAAAAAAAAGAAAAGCAATTCCTGGTGTTCTCATCGTGGCTCAACAGTTAATGAA
CCCGACTAGCATCCATGAGGACGAGGGTTCGATCCCTGGCCTCGCTCAGTGGGTTGAGGA
TCCAGCATTGCCGTGAGCTGTGGTGTGGGTCGCAGATGCGGCTGGGATCCCGCGTGGCTG
TGGCTCTGGCCTAGGCTGGAAGGGATAGCTCCAATTTGACCCCAGCCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-2169, gnl|bosTau2|chr10 (3568991-3566803)
               

               
               1-2169, gnl|Hg17|chr5 (77820610-77818530)
               

               
               1-2169, gnl|Mm7|chr13 (91254957-91256876)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2169, gnl|bosTau2|chr10 (3568991-3566803)
               

               
               1-2169, gnl|Hg17|chr5 (77820610-77818530)
               

               
               1-2169, gnl|Mm7|chr13 (91254957-91256876)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               jca (0.22792)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               jca (0.22792)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	1-2169, gnl\|bosTau2\|chr10 (3568991-3566803)
	1-2169, gnl\|Hg17\|chr5 (77820610-77818530)
	1-2169, gnl\|Mm7\|chr13 (91254957-91256876)

	csk (0.281492)
	ova (0.258264)
	jca (0.22792)
	mga (0.160205)
	spl (0.143184)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	cty (0.10408)