Non-Coding RNA Search

Ss1.1-Utr1-UTR010033H07.5

Sequence:


               
               ATTGCAGCGGCGGGACTCCGCTAGCTTCACTATGGCGGCTATCCCTCCAGACTCCTGGCA
GCCCCCCAACGTATACTTGGAGACCAGCATGGGGATCATTGTGCTGGAGCTGTACTGGAA
GCATGCTCCAAAGACCTGTAAGAACTTCGCTGAATTGGCTCGTCGAGGTTACTACAATGG
TACCAAATTCCACAGAATCATCAAAGACTTTATGATCCAGGGAGGTGACCCAACAGGAAC
AGGTCGAGGTGGTGCATCTATCTATGGCAAGCAGTTTGAAGATGAACTTCATCCCGACTT
GAAATTCACAGGGGCTGGAATTCTCGCAATGGCCAATGCAGGGCCAGACACCAACGGCAG
CCAGTTCTTTGTGACCCTGGCTCCCACGCAGTGGCTTGATGGCAAACACACCATTTTTGG
CCGTGTGTGCCAGGGGATAGGGATGGTGAATCGAGTAGGAATGGTGGAAACAAACTCCCA
AGACCGCCCCGTGGACGATGTGAAGATCATTAAGGCGTACCCTTCTGGGTAGACCTGTGT
CCCTGGGGCACACCCAGGTCTTCTGAGACAGCCCACTAAACCAGTTTCCAGATGGCCTAG
AATGACATGTAACTCTAAACTTCATTGTGGTCTTGCAAATCTGAGGCGCTGAGGAGCCTG
GGGTCCTGGGTTAGTTAGAGATGGAAGTGTTTTTTAATAGGATGCTTCTTTTCTTGTCCC
CTGTGCCTCCATTGTCAAAACATTTGCAGAAAAGTCCATACATGATTGTTCACAAGTTAT
TGCTCCCTGCAAATGGTGCATGCTGCCCCTCCTGTGTGCATCTCCTCGGTATACTGGGAA
CAAAGGGCAGCCAGCCTCATTTTGCAGTGCCTAACCAGCCTTTTCTTGCGGAAATTTATA
TTCTGGCCTACACCAAAGTCTTTGGTGGCTGAGAGCCAGCCGTAGAATTCAAAACCAAGT
AGTGTCTGTGTATCAGCCTTCTTAACTGTGTGCGCCCCCTATTTTAGTCTCTTGAATTTG
TTCTTTCAGGGGTTGTGTGCATCTCTTTCTCTATTTTCCCTCTCAAAACCAGAACATCAA
CACTGCTGTTTCTGACACTTACACGTCCCACGCAAAGCCACATTGAATTTTTGCCAAGTG
AAAAATGCATCCAACAATCAAGTTTCTAAAAAGGTGTCAAGTGGGGAATGATAATGTGTA
ATAATCGAGAAATGAATCTATTAAAAAGAAGCAGAAGCATTGACCATTTTTTTCCCCAGG
AAGAAGTAGAAATCTGTAGTGAGCGTAAGGGCAGACTATGGATTCTCCTTAAAAAGCAAT
ATTCTCATAAAGAAGAAGCACCACTTAAGTTTTTTTAACCTAAGACTTTAGAGAAACTAG
ATGAGAGATTTTTATATATATTTTTTAGTCTTTCTGTTTTTTTTAAGGGAGGGGGTGATG
GGAGAAAGGAAGTTAATATCTATGTAATACATAGAAACTTCCAAAATAAAATACCACTGA
TGGTTGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCAGCGGCGGGACTCCGCTAGCTTCACTATGGCGGCTATCCCTCCAGACTCCTGGCA
GCCCCCCAACGTATACTTGGAGACCAGCATGGGGATCATTGTGCTGGAGCTGTACTGGAA
GCATGCTCCAAAGACCTGTAAGAACTTCGCTGAATTGGCTCGTCGAGGTTACTACAATGG
TACCAAATTCCACAGAATCATCAAAGACTTTATGATCCAGGGAGGTGACCCAACAGGAAC
AGGTCGAGGTGGTGCATCTATCTATGGCAAGCAGTTTGAAGATGAACTTCATCCCGACTT
GAAATTCACAGGGGCTGGAATTCTCGCAATGGCCAATGCAGGGCCAGACACCAACGGCAG
CCAGTTCTTTGTGACCCTGGCTCCCACGCAGTGGCTTGATGGCAAACACACCATTTTTGG
CCGTGTGTGCCAGGGGATAGGGATGGTGAATCGAGTAGGAATGGTGGAAACAAACTCCCA
AGACCGCCCCGTGGACGATGTGAAGATCATTAAGGCGTACCCTTCTGGGTAGACCTGTGT
CCCTGGGGCACACCCAGGTCTTCTGAGACAGCCCACTAAACCAGTTTCCAGATGGCCTAG
AATGACATGTAACTCTAAACTTCATTGTGGTCTTGCAAATCTGAGGCGCTGAGGAGCCTG
GGGTCCTGGGTTAGTTAGAGATGGAAGTGTTTTTTAATAGGATGCTTCTTTTCTTGTCCC
CTGTGCCTCCATTGTCAAAACATTTGCAGAAAAGTCCATACATGATTGTTCACAAGTTAT
TGCTCCCTGCAAATGGTGCATGCTGCCCCTCCTGTGTGCATCTCCTCGGTATACTGGGAA
CAAAGGGCAGCCAGCCTCATTTTGCAGTGCCTAACCAGCCTTTTCTTGCGGAAATTTATA
TTCTGGCCTACACCAAAGTCTTTGGTGGCTGAGAGCCAGCCGTAGAATTCAAAACCAAGT
AGTGTCTGTGTATCAGCCTTCTTAACTGTGTGCGCCCCCTATTTTAGTCTCTTGAATTTG
TTCTTTCAGGGGTTGTGTGCATCTCTTTCTCTATTTTCCCTCTCAAAACCAGAACATCAA
CACTGCTGTTTCTGACACTTACACGTCCCACGCAAAGCCACATTGAATTTTTGCCAAGTG
AAAAATGCATCCAACAATCAAGTTTCTAAAAAGGTGTCAAGTGGGGAATGATAATGTGTA
ATAATCGAGAAATGAATCTATTAAAAAGAAGCAGAAGCATTGACCATTTTTTTCCCCAGG
AAGAAGTAGAAATCTGTAGTGAGCGTAAGGGCAGACTATGGATTCTCCTTAAAAAGCAAT
ATTCTCATAAAGAAGAAGCACCACTTAAGTTTTTTTAACCTAAGACTTTAGAGAAACTAG
ATGAGAGATTTTTATATATATTTTTTAGTCTTTCTGTTTTTTTTAAGGGAGGGGGTGATG
GGAGAAAGGAAGTTAATATCTATGTAATACATAGAAACTTCCAAAATAAAATACCACTGA
TGGTTGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5E992_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E992_BOVIN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               626-743, - strand, RNAz p=0.944766
               

               
               1401-1509, + strand, RNAz p=0.999504

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               626-743, - strand, RNAz p=0.944766
               

               
               1401-1509, + strand, RNAz p=0.999504

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               85-244, gnl|bosTau2|chr23 (10061920-10061761)
               

               
               85-244, gnl|Hg17|chr6 (36947629-36947470)
               

               
               85-244, gnl|Mm7|chr17 (27453985-27453826)
               


               
               309-1509, gnl|bosTau2|chr23 (12414446-12413258)
               

               
               309-1509, gnl|Hg17|chr6 (36931790-36930583)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-244, gnl|bosTau2|chr23 (10061920-10061761)
               

               
               85-244, gnl|Hg17|chr6 (36947629-36947470)
               

               
               85-244, gnl|Mm7|chr17 (27453985-27453826)
               


               
               309-1509, gnl|bosTau2|chr23 (12414446-12413258)
               

               
               309-1509, gnl|Hg17|chr6 (36931790-36930583)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fce (0.271592)
               

               
               bla (0.248694)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	626-743, - strand, RNAz p=0.944766
	1401-1509, + strand, RNAz p=0.999504

	85-244, gnl\|bosTau2\|chr23 (10061920-10061761)
	85-244, gnl\|Hg17\|chr6 (36947629-36947470)
	85-244, gnl\|Mm7\|chr17 (27453985-27453826)

	309-1509, gnl\|bosTau2\|chr23 (12414446-12413258)
	309-1509, gnl\|Hg17\|chr6 (36931790-36930583)

	fce (0.271592)
	bla (0.248694)
	cty (0.20816)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	cut (0.169924)
	lun (0.150489)
	hyp (0.142837)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	tra (0.123092)
	cly (0.120642)
	ecc (0.115035)