Non-Coding RNA Search

Ss1.1-Utr1-UTR010034A06.5

Sequence:


               
               CCAGAGGTGGGCCTGAGGGGTGGCAGCAGGCTCTCCGCCTGGGACCCAGCCAGCTGGGCA
GCTCACCTCTCAACACGAGGCTCTCACCTGTGTCGTCCCCTCCCCACGGCCACACAGACA
CCCCTGGGGAGAAGTCACAGGCCCCCAGCAGGCCCCGCCCCTGGAGAGGAGGCCAGGGCT
GGGCAGGCGGGTGGCCGGCCGGACACTGGACCCGGAAGGGGGGTAGGCGGCTGGGATGAG
TGGCGAGCTGTCCATGGGAGCACCCAGCGGCCCCATTGGCACCAGTACAGGCAGGGGCAC
CTGCAGCAGCTGAGCGGCAACCCGGCTGGAGGGTCTGGCCACTACAGCCAGAGCGCCCCC
TACTTTGGTGGCGACTGCTACTATTGGCCCAACCAGCGGATCACCGGCCAGGCAGTTTCG
GCAGAGAGTCTGGGGCACCAGTGACTCCCCCGTCCTCTTTATCCACCACCCAGGAGCTTC
AGGGACTACACAGCGACTAGAGGGCCCCCCAAAAGTACAACATCTGGCCCGCCCCAGCCC
GCAGACGGCCCGTCCTCCCCAAACCCAGGGCCCCACATCTCCTCGGGCTCAGCCGCGCGC
TCCCCCCGTTCTGCCCCGTCGCACATTCGGCCCCAGCGACTCGGCCAGAGCGGCGCTGGC
AGAGGAGTGTCCGGCAGGAGGGCCAACGCCCGCTGTTCGGTTTGCGATACGCAGCAGGGA
GGCGGGCGGCCCCTGCGCCGGCTTCCAGATTCCAATGGGGATCCCGATGAGGAAGCCGCT
GCTCGTGCTGCTCGTCTTCTTGGCCTTGGCCTCGTGCTGCTATGCTGCTTACCGCCCCAG
TGAGACTCTGTGCGGCGGGGAGCTGGTGGACACCCTCCAGTTTGTCTGCGGGGACCGCGG
CTTCTACTTCAGCAGGCCGGCAAGCCGCGTGAACCGCCGCAGCCGTGGCATCGTGGAAGA
GTGCTGCTTCCGTAGCTGCGACCTGGCCCTGCTGGAGACCTACTGCGCCACCCCCGCCAA
GTCCGAGAGGGACGTGTCGACCCCTCCGACCGTGCTTCCGGACAACTTCCCCAGATACCC
CGTGGGCAAGTTCTTCCGCTATGACACCTGGAAGCAGTCCGCCCAACGCCTGCGCAGGGG
CCTGCCGGCCCTCCTGCGCGCCCGCCGGGGTCGCACGCTCGCCAAGGAGCTGGAGGCGGT
CAGAGAGGCCAAGCGTCACCGACCCCTGACCGCCCGTCCCACCCGAGACCCCGCCGCCCA
CGGGGGCGCCTCTCCCGAGGCGTCCGGCCATCGGAAGTGAGCCAAATTGTCGTAATTCTG
CGGTGCCACCATCCACCTCGTGACCTCCTCTCGACCGGGACCGCTTCCATCAGGTCCCCC
TTCTGAGATCTCTGTACCCTTCTGTCTGCGGGCATCTCCGCCCCGGGCCCCGTGCCCCAA
CCTCCCCATGTCAGGCTAGTCTCTCCTCGGCCCCTTCCATCGGGCCGAGGGCATCCAAAC
CACAAACCCAATTGGCTTGGTCTGTATCTCCCCCCAAATTATGCCCCCAATTATCCCCAA
GTTACATACCAAAAATTGAACCCCTCAACCACACCCACATACAATCAGCCCCCGTAAAAC
GAATTGGCATCTTTAAAACACCAGAAAAGCGAATTAGCTTTAAAAAAAAAATAAACCCAA
AATATCAATTAGCTGAAAAAAAAATACTAAAAATAAATTGGCTTAAAAACAATTGGCAAA
ATAAAAGAATTTGGCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAGGTGGGCCTGAGGGGTGGCAGCAGGCTCTCCGCCTGGGACCCAGCCAGCTGGGCA
GCTCACCTCTCAACACGAGGCTCTCACCTGTGTCGTCCCCTCCCCACGGCCACACAGACA
CCCCTGGGGAGAAGTCACAGGCCCCCAGCAGGCCCCGCCCCTGGAGAGGAGGCCAGGGCT
GGGCAGGCGGGTGGCCGGCCGGACACTGGACCCGGAAGGGGGGTAGGCGGCTGGGATGAG
TGGCGAGCTGTCCATGGGAGCACCCAGCGGCCCCATTGGCACCAGTACAGGCAGGGGCAC
CTGCAGCAGCTGAGCGGCAACCCGGCTGGAGGGTCTGGCCACTACAGCCAGAGCGCCCCC
TACTTTGGTGGCGACTGCTACTATTGGCCCAACCAGCGGATCACCGGCCAGGCAGTTTCG
GCAGAGAGTCTGGGGCACCAGTGACTCCCCCGTCCTCTTTATCCACCACCCAGGAGCTTC
AGGGACTACACAGCGACTAGAGGGCCCCCCAAAAGTACAACATCTGGCCCGCCCCAGCCC
GCAGACGGCCCGTCCTCCCCAAACCCAGGGCCCCACATCTCCTCGGGCTCAGCCGCGCGC
TCCCCCCGTTCTGCCCCGTCGCACATTCGGCCCCAGCGACTCGGCCAGAGCGGCGCTGGC
AGAGGAGTGTCCGGCAGGAGGGCCAACGCCCGCTGTTCGGTTTGCGATACGCAGCAGGGA
GGCGGGCGGCCCCTGCGCCGGCTTCCAGATTCCAATGGGGATCCCGATGAGGAAGCCGCT
GCTCGTGCTGCTCGTCTTCTTGGCCTTGGCCTCGTGCTGCTATGCTGCTTACCGCCCCAG
TGAGACTCTGTGCGGCGGGGAGCTGGTGGACACCCTCCAGTTTGTCTGCGGGGACCGCGG
CTTCTACTTCAGCAGGCCGGCAAGCCGCGTGAACCGCCGCAGCCGTGGCATCGTGGAAGA
GTGCTGCTTCCGTAGCTGCGACCTGGCCCTGCTGGAGACCTACTGCGCCACCCCCGCCAA
GTCCGAGAGGGACGTGTCGACCCCTCCGACCGTGCTTCCGGACAACTTCCCCAGATACCC
CGTGGGCAAGTTCTTCCGCTATGACACCTGGAAGCAGTCCGCCCAACGCCTGCGCAGGGG
CCTGCCGGCCCTCCTGCGCGCCCGCCGGGGTCGCACGCTCGCCAAGGAGCTGGAGGCGGT
CAGAGAGGCCAAGCGTCACCGACCCCTGACCGCCCGTCCCACCCGAGACCCCGCCGCCCA
CGGGGGCGCCTCTCCCGAGGCGTCCGGCCATCGGAAGTGAGCCAAATTGTCGTAATTCTG
CGGTGCCACCATCCACCTCGTGACCTCCTCTCGACCGGGACCGCTTCCATCAGGTCCCCC
TTCTGAGATCTCTGTACCCTTCTGTCTGCGGGCATCTCCGCCCCGGGCCCCGTGCCCCAA
CCTCCCCATGTCAGGCTAGTCTCTCCTCGGCCCCTTCCATCGGGCCGAGGGCATCCAAAC
CACAAACCCAATTGGCTTGGTCTGTATCTCCCCCCAAATTATGCCCCCAATTATCCCCAA
GTTACATACCAAAAATTGAACCCCTCAACCACACCCACATACAATCAGCCCCCGTAAAAC
GAATTGGCATCTTTAAAACACCAGAAAAGCGAATTAGCTTTAAAAAAAAAATAAACCCAA
AATATCAATTAGCTGAAAAAAAAATACTAAAAATAAATTGGCTTAAAAACAATTGGCAAA
ATAAAAGAATTTGGCCCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               IGF2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               IGF2_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               318-1715, - strand, RNAz p=0.999081
               

               
               545-661, + strand, RNAz p=0.953978

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-1715, - strand, RNAz p=0.999081
               

               
               545-661, + strand, RNAz p=0.953978

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000612, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000612, +

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               318-502, gnl|bosTau2|chr29 (44340689-44340510)
               

               
               318-502, gnl|Hg17|chr11 (2127121-2126937)
               

               
               318-502, gnl|Mm7|chr7 (139097090-139096906)
               


               
               505-748, gnl|bosTau2|chr29 (44331032-44330788)
               

               
               505-748, gnl|Hg17|chr11 (2116281-2116035)
               

               
               505-748, gnl|Mm7|chr7 (139085880-139085644)
               


               
               912-1061, gnl|bosTau2|chr29 (44326613-44326464)
               

               
               912-1061, gnl|Hg17|chr11 (2111471-2111322)
               

               
               912-1061, gnl|Mm7|chr7 (139081728-139081579)
               


               
               1162-1761, gnl|bosTau2|chr29 (44326213-44325618)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               318-502, gnl|bosTau2|chr29 (44340689-44340510)
               

               
               318-502, gnl|Hg17|chr11 (2127121-2126937)
               

               
               318-502, gnl|Mm7|chr7 (139097090-139096906)
               


               
               505-748, gnl|bosTau2|chr29 (44331032-44330788)
               

               
               505-748, gnl|Hg17|chr11 (2116281-2116035)
               

               
               505-748, gnl|Mm7|chr7 (139085880-139085644)
               


               
               912-1061, gnl|bosTau2|chr29 (44326613-44326464)
               

               
               912-1061, gnl|Hg17|chr11 (2111471-2111322)
               

               
               912-1061, gnl|Mm7|chr7 (139081728-139081579)
               


               
               1162-1761, gnl|bosTau2|chr29 (44326213-44325618)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               amn (7.10109)
               

               
               fli (3.65186)
               

               
               ese (3.28906)
               

               
               pla (2.67344)
               

               
               eru (1.56062)
               

               
               nms (1.49701)
               

               
               eli (1.36633)
               

               
               ute (1.32784)
               

               
               eep (1.10308)
               

               
               jca (1.02564)
               

               
               cli (0.91687)
               

               
               nep (0.551775)
               

               
               fty (0.527519)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               eje (0.296501)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (7.10109)
               

               
               fli (3.65186)
               

               
               ese (3.28906)
               

               
               pla (2.67344)
               

               
               eru (1.56062)
               

               
               nms (1.49701)
               

               
               eli (1.36633)
               

               
               ute (1.32784)
               

               
               eep (1.10308)
               

               
               jca (1.02564)
               

               
               cli (0.91687)
               

               
               nep (0.551775)
               

               
               fty (0.527519)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               eje (0.296501)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	318-1715, - strand, RNAz p=0.999081
	545-661, + strand, RNAz p=0.953978

	318-502, gnl\|bosTau2\|chr29 (44340689-44340510)
	318-502, gnl\|Hg17\|chr11 (2127121-2126937)
	318-502, gnl\|Mm7\|chr7 (139097090-139096906)

	505-748, gnl\|bosTau2\|chr29 (44331032-44330788)
	505-748, gnl\|Hg17\|chr11 (2116281-2116035)
	505-748, gnl\|Mm7\|chr7 (139085880-139085644)

	912-1061, gnl\|bosTau2\|chr29 (44326613-44326464)
	912-1061, gnl\|Hg17\|chr11 (2111471-2111322)
	912-1061, gnl\|Mm7\|chr7 (139081728-139081579)

	1162-1761, gnl\|bosTau2\|chr29 (44326213-44325618)

	amn (7.10109)
	fli (3.65186)
	ese (3.28906)
	pla (2.67344)
	eru (1.56062)
	nms (1.49701)
	eli (1.36633)
	ute (1.32784)
	eep (1.10308)
	jca (1.02564)
	cli (0.91687)
	nep (0.551775)
	fty (0.527519)
	elu (0.385356)
	nlu (0.383362)
	eje (0.296501)
	cbe (0.239234)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	nca (0.136874)
	cly (0.120642)
	ebs (0.118301)