Non-Coding RNA Search

Ss1.1-Utr1-UTR010034C01.5

Sequence:


               
               AGTTGCGTCCAAGCTCTGCAAGTCGCCAGTCTCTTGCAAACTTGGTGTTACTTTTTTTCT
GGTACCCCGTATCTCCGCGCAAGCAACCACACACAGACACACACACATTCACACACTCTC
TTCAGCACCCGCTCCCAGCGCCGCGACCATGGATGATTCCTCCGAAGAGTACGAAGCTCT
GTTCCGGTCGCTTCTAGCGTTTTACCAGTCTAAGTCCTTGTTTGACGATGAAAACACCAG
CAAGGATCGTGTCTTCAACCCTGAGCTGGTCATCGCCCACTGCTTCAAGCAATTCAAGCA
GGAGGACTTCCACCTGCCTCGGAGTCGCCGGCGGATCTTCATCTTGCCTCCCAAGGAAGA
TGCGATGCCCGCCAACCCCACACCCCAAACCCAGGCTCCCCCACAGCCCAGCCCCAGCCT
TGAAGCCCTGAAAATTGGGGACGTCCAAGAACAGCCAGAGGACTCAGTCTGGCTGAGCCA
GAGGCTGAAGCTTCGGCAGGACCTGGAGTCATTTGGCAACATAGAGAAGTGGCTGCAGAA
CAAGCCTAGACTCACACCTTCTGAGGCCAAAGTCCTCCACTGGATCCACAAGGAGCATGA
TGATTGGCTGATGGCCCAGCAGGCTACTACTGCCAGAGCCACCAAGAAGAAAACCCTCCG
ACCTTCCCGCCTGCTGGTGCCACAGCTCCGACTGCCCAGACCCCCTGCCCTGTCGGCCTT
GTACGCCTACCTGCACAGCCAGAAGATCAAGATCCTGGAGATATTTAACAAGGTGGACCG
GGGCGAGAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGCGTCCAAGCTCTGCAAGTCGCCAGTCTCTTGCAAACTTGGTGTTACTTTTTTTCT
GGTACCCCGTATCTCCGCGCAAGCAACCACACACAGACACACACACATTCACACACTCTC
TTCAGCACCCGCTCCCAGCGCCGCGACCATGGATGATTCCTCCGAAGAGTACGAAGCTCT
GTTCCGGTCGCTTCTAGCGTTTTACCAGTCTAAGTCCTTGTTTGACGATGAAAACACCAG
CAAGGATCGTGTCTTCAACCCTGAGCTGGTCATCGCCCACTGCTTCAAGCAATTCAAGCA
GGAGGACTTCCACCTGCCTCGGAGTCGCCGGCGGATCTTCATCTTGCCTCCCAAGGAAGA
TGCGATGCCCGCCAACCCCACACCCCAAACCCAGGCTCCCCCACAGCCCAGCCCCAGCCT
TGAAGCCCTGAAAATTGGGGACGTCCAAGAACAGCCAGAGGACTCAGTCTGGCTGAGCCA
GAGGCTGAAGCTTCGGCAGGACCTGGAGTCATTTGGCAACATAGAGAAGTGGCTGCAGAA
CAAGCCTAGACTCACACCTTCTGAGGCCAAAGTCCTCCACTGGATCCACAAGGAGCATGA
TGATTGGCTGATGGCCCAGCAGGCTACTACTGCCAGAGCCACCAAGAAGAAAACCCTCCG
ACCTTCCCGCCTGCTGGTGCCACAGCTCCGACTGCCCAGACCCCCTGCCCTGTCGGCCTT
GTACGCCTACCTGCACAGCCAGAAGATCAAGATCCTGGAGATATTTAACAAGGTGGACCG
GGGCGAGAACCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               227-346, - strand, RNAz p=0.579679
               

               
               387-543, - strand, RNAz p=0.999976

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-346, - strand, RNAz p=0.579679
               

               
               387-543, - strand, RNAz p=0.999976

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               381-483, - strand, RNAmicro p=0.998266

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               381-483, - strand, RNAmicro p=0.998266

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-134, gnl|bosTau2|chr8 (40773954-40773824)
               

               
               1-134, gnl|Hg17|chr3 (130630174-130630049)
               


               
               196-597, gnl|bosTau2|chr8 (40769585-40769181)
               

               
               196-597, gnl|Hg17|chr3 (130623346-130622954)
               

               
               196-597, gnl|Mm7|chr6 (115849386-115848973)
               


               
               645-792, gnl|bosTau2|chr8 (40766881-40766734)
               

               
               645-792, gnl|Hg17|chr3 (130619991-130619835)
               

               
               645-792, gnl|Mm7|chr6 (115847977-115847830)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr8 (40773954-40773824)
               

               
               1-134, gnl|Hg17|chr3 (130630174-130630049)
               


               
               196-597, gnl|bosTau2|chr8 (40769585-40769181)
               

               
               196-597, gnl|Hg17|chr3 (130623346-130622954)
               

               
               196-597, gnl|Mm7|chr6 (115849386-115848973)
               


               
               645-792, gnl|bosTau2|chr8 (40766881-40766734)
               

               
               645-792, gnl|Hg17|chr3 (130619991-130619835)
               

               
               645-792, gnl|Mm7|chr6 (115847977-115847830)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	227-346, - strand, RNAz p=0.579679
	387-543, - strand, RNAz p=0.999976

	1-134, gnl\|bosTau2\|chr8 (40773954-40773824)
	1-134, gnl\|Hg17\|chr3 (130630174-130630049)

	196-597, gnl\|bosTau2\|chr8 (40769585-40769181)
	196-597, gnl\|Hg17\|chr3 (130623346-130622954)
	196-597, gnl\|Mm7\|chr6 (115849386-115848973)

	645-792, gnl\|bosTau2\|chr8 (40766881-40766734)
	645-792, gnl\|Hg17\|chr3 (130619991-130619835)
	645-792, gnl\|Mm7\|chr6 (115847977-115847830)