Ss1.1-Utr1-UTR010034C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACCGCGCCAGCCCGGACCCCACCGACGCCCGGCCAGCCCCGGCTCCGCACCCGCTCCG CGCACCGAGCCGGCGCCTTCTCCGCACCAGGAAAGTCCCACACGCCTGCAGCCAAGATGT CCAGTAAACGGGCCAAGGCCAAGACCACCAAGAAGCGGCCACAGAGGGCCACATCCAATG TCTTCGCGATGTTCGACCAGTCCCAGATCCAGGAGTTTAAGGAGGCCTTCAACATGATCG ACCAGAACCGAGATGGCTTCATTGACAAGGAGGACTTGCATGACATGCTGGCCTCACTGG GCAAGAACCCCACGGACGAGTACCTGGAGGGCATGATGAGCGAGGCCCCGGGGCCCATCA ACTTCACCATGTTCCTCACCATGTTTGGGGAGAAGCTGAACGGCACGGACCCCGAGGACG TGATCCGCAACGCCTTTGCCTGCTTCGATGAGGAGGCCTCAGGCTTCATCCACGAGGACC ACCTTCGGGAGCTGCTCACCACCATGGGCGACCGCTTCACAGACGAGGAAGTGGACGAGA TGTACCGTGAGGCGCCCATTGATAAGAAAGGCAACTTCAACTACGTGGAGTTCACTCGCA TCCTCAAACACGGTGCCAAGGACAAGGACGACTAGCCCCCCCCCCCGCCCGGCCCCCAGG CCCAGGCCCCTGTCCCAGTCACCTGCTCCCCTACACCGTCTGCACTGGCTCCATGCCCAC GAGCCCACAGGACCCTCTCAGAGGACCCTCCCTCTGAGGGGTTAGGGGTCCAGCTCCCAG TGGAGGCCGAGAGAGCGCAGTGCCACACAAGAGGCACACAGCCAACGCCAGGCAGGTGTT CCCAGCGTGACCCTCTAAGGAAACACCATTTTCTTGGGAGGTTGACCTGGAGGCACCAAG GGACAGCCCCTCATGACAGCCCAGGCCTCAGCTGTCGCCCACCCCCTCCAGACTGTTCCC TGCAGGAAGGGCCCCATGTCCTGGTCTGGACACCACTTTGCGTGCACCCCCATGCAGGGT ATGAAAGCCCTTCCCCAGCCACTGCCACCAACACTCAAACCTCACCAAGGCCCCTTCTCA GAGGACAGGATGCCAGGCCCCTCCCCTACACCCTGCCCAGCCACCAGAACACCCCCAGGG TTCTCCCCCTCCCCCAGGAGTGTGCTCCAGAAAGTGCGTGCAGGGTAGAGATTTGTCTCG GGGAGGCAGAACCTCTAATAGAAGGCTGAGCACTGCTTCGGGTCTATGTGTCTGTGCTTG GGGTGAAATAAAGGCGCCCCTAGGCCCCAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACCGCGCCAGCCCGGACCCCACCGACGCCCGGCCAGCCCCGGCTCCGCACCCGCTCCG CGCACCGAGCCGGCGCCTTCTCCGCACCAGGAAAGTCCCACACGCCTGCAGCCAAGATGT CCAGTAAACGGGCCAAGGCCAAGACCACCAAGAAGCGGCCACAGAGGGCCACATCCAATG TCTTCGCGATGTTCGACCAGTCCCAGATCCAGGAGTTTAAGGAGGCCTTCAACATGATCG ACCAGAACCGAGATGGCTTCATTGACAAGGAGGACTTGCATGACATGCTGGCCTCACTGG GCAAGAACCCCACGGACGAGTACCTGGAGGGCATGATGAGCGAGGCCCCGGGGCCCATCA ACTTCACCATGTTCCTCACCATGTTTGGGGAGAAGCTGAACGGCACGGACCCCGAGGACG TGATCCGCAACGCCTTTGCCTGCTTCGATGAGGAGGCCTCAGGCTTCATCCACGAGGACC ACCTTCGGGAGCTGCTCACCACCATGGGCGACCGCTTCACAGACGAGGAAGTGGACGAGA TGTACCGTGAGGCGCCCATTGATAAGAAAGGCAACTTCAACTACGTGGAGTTCACTCGCA TCCTCAAACACGGTGCCAAGGACAAGGACGACTAGCCCCCCCCCCCGCCCGGCCCCCAGG CCCAGGCCCCTGTCCCAGTCACCTGCTCCCCTACACCGTCTGCACTGGCTCCATGCCCAC GAGCCCACAGGACCCTCTCAGAGGACCCTCCCTCTGAGGGGTTAGGGGTCCAGCTCCCAG TGGAGGCCGAGAGAGCGCAGTGCCACACAAGAGGCACACAGCCAACGCCAGGCAGGTGTT CCCAGCGTGACCCTCTAAGGAAACACCATTTTCTTGGGAGGTTGACCTGGAGGCACCAAG GGACAGCCCCTCATGACAGCCCAGGCCTCAGCTGTCGCCCACCCCCTCCAGACTGTTCCC TGCAGGAAGGGCCCCATGTCCTGGTCTGGACACCACTTTGCGTGCACCCCCATGCAGGGT ATGAAAGCCCTTCCCCAGCCACTGCCACCAACACTCAAACCTCACCAAGGCCCCTTCTCA GAGGACAGGATGCCAGGCCCCTCCCCTACACCCTGCCCAGCCACCAGAACACCCCCAGGG TTCTCCCCCTCCCCCAGGAGTGTGCTCCAGAAAGTGCGTGCAGGGTAGAGATTTGTCTCG GGGAGGCAGAACCTCTAATAGAAGGCTGAGCACTGCTTCGGGTCTATGTGTCTGTGCTTG GGGTGAAATAAAGGCGCCCCTAGGCCCCAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 655-804, - strand, RNAz p=0.999996 | |
| 1058-1216, - strand, RNAz p=0.731703 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 655-804, - strand, RNAz p=0.999996 | |
| 1058-1216, - strand, RNAz p=0.731703 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 89-301, gnl|bosTau2|chr13 (44684825-44685037) | |
| 89-301, gnl|canFam2|chr24 (28297362-28297596) | |
| 89-301, gnl|canFam2|chr3 (64644407-64644242) | |
| 89-301, gnl|canFam2|chrX (43963532-43963312) | |
| 89-301, gnl|danRer3|chr2 (22846396-22846238) | |
| 89-301, gnl|danRer3|chrNA (133814465-133814643) | |
| 89-301, gnl|danRer3|chrNA (133814641-133814432) | |
| 89-301, gnl|dasNov1|scaffold_3223 (94283-94464) | |
| 89-301, gnl|dasNov1|scaffold_3223 (94472-94313) | |
| 89-301, gnl|dasNov1|scaffold_3223 (94475-94280) | |
| 89-301, gnl|echTel1|scaffold_309793 (3742-3584) | |
| 89-301, gnl|echTel1|scaffold_309793 (3575-3734) | |
| 89-301, gnl|echTel1|scaffold_309793 (3565-3766) | |
| 89-301, gnl|fr1|chrUn (192013920-192014114) | |
| 89-301, gnl|fr1|chrUn (3094661-3094820) | |
| 89-301, gnl|fr1|chrUn (192014119-192013898) | |
| 89-301, gnl|galGal2|chr20 (378986-378806) | |
| 89-301, gnl|galGal2|chr20 (378975-378770) | |
| 89-301, gnl|hg17|chr12 (7914703-7914873) | |
| 89-301, gnl|hg17|chr20 (34606684-34606909) | |
| 89-301, gnl|Hg17|chr20 (34606674-34606886) | |
| 89-301, gnl|hg17|chr8 (42105760-42105966) | |
| 89-301, gnl|loxAfr1|scaffold_75495 (2435-2275) | |
| 89-301, gnl|loxAfr1|scaffold_75495 (2269-2426) | |
| 89-301, gnl|loxAfr1|scaffold_75495 (2269-2461) | |
| 89-301, gnl|mm7|chr2 (156519618-156519399) | |
| 89-301, gnl|mm7|chr2 (156519423-156519588) | |
| 89-301, gnl|mm7|chr2 (156519417-156519638) | |
| 89-301, gnl|Mm7|chr2 (156519407-156519619) | |
| 89-301, gnl|monDom2|scaffold_6 (88260612-88260823) | |
| 89-301, gnl|monDom2|scaffold_6 (88260807-88260642) | |
| 89-301, gnl|monDom2|scaffold_6 (10432571-10432352) | |
| 89-301, gnl|oryCun1|scaffold_203887 (130132-130360) | |
| 89-301, gnl|oryCun1|scaffold_215277 (49831-49666) | |
| 89-301, gnl|oryCun1|scaffold_215277 (49837-49614) | |
| 89-301, gnl|panTro1|chr10 (8455421-8455591) | |
| 89-301, gnl|panTro1|chr21 (36843497-36843722) | |
| 89-301, gnl|panTro1|chr7 (43524200-43524406) | |
| 89-301, gnl|rheMac2|chr10 (27951827-27951603) | |
| 89-301, gnl|rheMac2|chr11 (8180657-8180822) | |
| 89-301, gnl|rheMac2|chr8 (42705161-42705342) | |
| 89-301, gnl|rn3|chr3 (147096359-147096141) | |
| 89-301, gnl|rn3|chr3 (147096164-147096329) | |
| 89-301, gnl|rn3|chr3 (147096158-147096381) | |
| 89-301, gnl|tetNig1|chrUn_random (43292710-43292905) | |
| 89-301, gnl|tetNig1|chrUn_random (43292905-43292740) | |
| 89-301, gnl|tetNig1|chrUn_random (43292905-43292707) | |
| 89-301, gnl|xenTro1|scaffold_345 (1221996-1222190) | |
| 89-301, gnl|xenTro1|scaffold_345 (1222170-1222005) | |
| 89-301, gnl|xenTro1|scaffold_345 (1222170-1221972) | |
| 457-1291, gnl|bosTau2|chr13 (44688989-44689791) | |
| 457-1291, gnl|Hg17|chr20 (34610888-34611694) | |
| 457-1291, gnl|Mm7|chr2 (156521874-156522604) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-301, gnl|bosTau2|chr13 (44684825-44685037) | |
| 89-301, gnl|canFam2|chr24 (28297362-28297596) | |
| 89-301, gnl|canFam2|chr3 (64644407-64644242) | |
| 89-301, gnl|canFam2|chrX (43963532-43963312) | |
| 89-301, gnl|danRer3|chr2 (22846396-22846238) | |
| 89-301, gnl|danRer3|chrNA (133814465-133814643) | |
| 89-301, gnl|danRer3|chrNA (133814641-133814432) | |
| 89-301, gnl|dasNov1|scaffold_3223 (94283-94464) | |
| 89-301, gnl|dasNov1|scaffold_3223 (94472-94313) | |
| 89-301, gnl|dasNov1|scaffold_3223 (94475-94280) | |
| 89-301, gnl|echTel1|scaffold_309793 (3742-3584) | |
| 89-301, gnl|echTel1|scaffold_309793 (3575-3734) | |
| 89-301, gnl|echTel1|scaffold_309793 (3565-3766) | |
| 89-301, gnl|fr1|chrUn (192013920-192014114) | |
| 89-301, gnl|fr1|chrUn (3094661-3094820) | |
| 89-301, gnl|fr1|chrUn (192014119-192013898) | |
| 89-301, gnl|galGal2|chr20 (378986-378806) | |
| 89-301, gnl|galGal2|chr20 (378975-378770) | |
| 89-301, gnl|hg17|chr12 (7914703-7914873) | |
| 89-301, gnl|hg17|chr20 (34606684-34606909) | |
| 89-301, gnl|Hg17|chr20 (34606674-34606886) | |
| 89-301, gnl|hg17|chr8 (42105760-42105966) | |
| 89-301, gnl|loxAfr1|scaffold_75495 (2435-2275) | |
| 89-301, gnl|loxAfr1|scaffold_75495 (2269-2426) | |
| 89-301, gnl|loxAfr1|scaffold_75495 (2269-2461) | |
| 89-301, gnl|mm7|chr2 (156519618-156519399) | |
| 89-301, gnl|mm7|chr2 (156519423-156519588) | |
| 89-301, gnl|mm7|chr2 (156519417-156519638) | |
| 89-301, gnl|Mm7|chr2 (156519407-156519619) | |
| 89-301, gnl|monDom2|scaffold_6 (88260612-88260823) | |
| 89-301, gnl|monDom2|scaffold_6 (88260807-88260642) | |
| 89-301, gnl|monDom2|scaffold_6 (10432571-10432352) | |
| 89-301, gnl|oryCun1|scaffold_203887 (130132-130360) | |
| 89-301, gnl|oryCun1|scaffold_215277 (49831-49666) | |
| 89-301, gnl|oryCun1|scaffold_215277 (49837-49614) | |
| 89-301, gnl|panTro1|chr10 (8455421-8455591) | |
| 89-301, gnl|panTro1|chr21 (36843497-36843722) | |
| 89-301, gnl|panTro1|chr7 (43524200-43524406) | |
| 89-301, gnl|rheMac2|chr10 (27951827-27951603) | |
| 89-301, gnl|rheMac2|chr11 (8180657-8180822) | |
| 89-301, gnl|rheMac2|chr8 (42705161-42705342) | |
| 89-301, gnl|rn3|chr3 (147096359-147096141) | |
| 89-301, gnl|rn3|chr3 (147096164-147096329) | |
| 89-301, gnl|rn3|chr3 (147096158-147096381) | |
| 89-301, gnl|tetNig1|chrUn_random (43292710-43292905) | |
| 89-301, gnl|tetNig1|chrUn_random (43292905-43292740) | |
| 89-301, gnl|tetNig1|chrUn_random (43292905-43292707) | |
| 89-301, gnl|xenTro1|scaffold_345 (1221996-1222190) | |
| 89-301, gnl|xenTro1|scaffold_345 (1222170-1222005) | |
| 89-301, gnl|xenTro1|scaffold_345 (1222170-1221972) | |
| 457-1291, gnl|bosTau2|chr13 (44688989-44689791) | |
| 457-1291, gnl|Hg17|chr20 (34610888-34611694) | |
| 457-1291, gnl|Mm7|chr2 (156521874-156522604) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| hlv (1.11405) | |
| ute (1.06228) | |
| csp (0.805932) | |
| cov (0.660764) | |
| ese (0.506009) | |
| eje (0.494169) | |
| eru (0.480192) | |
| nmm (0.398406) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| nco (0.323468) | |
| cag (0.302389) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cst (0.140036) | |
| cly (0.120642) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (1.11405) | |
| ute (1.06228) | |
| csp (0.805932) | |
| cov (0.660764) | |
| ese (0.506009) | |
| eje (0.494169) | |
| eru (0.480192) | |
| nmm (0.398406) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| nco (0.323468) | |
| cag (0.302389) | |
| pty (0.285429) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cst (0.140036) | |
| cly (0.120642) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| jej (0.0989218) |