Ss1.1-Utr1-UTR010034D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAAAAAACTCCATTTCCTCCTTTCCCGCCGGCCTCTCCCCTCCACCCCGGCACCCCAA ATTTCAATGTGTCGCCTCCTGGGCGCAGAGCGCCGGTGTTGAGCGAGGCGGCGGCCGCGG CTGGGAAAATGCTGGGCATGTACGTGCCGGACAGGTTCTCCCTGAAGTCTTCCCGGGTTC AGGACGGGATGGGGCTCTACACGGCCCGCAGAGTGAGAAAGGGTGAAAAGTTTGGACCTT TCGCTGGAGAGAAGAGAATGCCGGAAGACTTGGATGAAAATATGGATTACAGGTTGATGT GGGAGGTTCGCGGGAGTAAGGGAGAAGTTCTGTACATTTTGGATGCTACCAACCCACGAC ACTCCAACTGGCTTCGCTTTGTTCATGAGGCACCATCTCAGGAGCAGAAGAACTTGGCTG CCATTCAAGAAGGAGAAAATATTTTCTATTTGGCAGTTGAAGATATAGAAACAGATACAG AGCTTCTGATTGGCTACCTGGACAGTGACATGGAGGCCGATGAGGAGGAACAAGAGATTA TGACAATGATCAAAGAAGGGGAAGGTAAAAATTCTAAAGGACAATCAACAGCTGGTAGAA AAGATCGCTTTGGCTGTAAAGAGGACTATGCCTGTCCCCAGTGTGAATCAAGTTTTACCA GTGAGGAAATTCTTGCTGAGCATCTTCAGACATTGCACCAGAAACCCACAGAGGAGAAAG AATTTAAGTGCAAGAGCTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACAGT GAGTACTTTTAAAATTATAAGCTAACACTTTGTTTAACTGCTCCATTTGGTTTGTTCTTA TAGTTTCTAACCTGCGTGCATGTGTGATGATATGTGTATAGAAATTAGGCATTCTCTATT GTCATTGTCATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAAAAAACTCCATTTCCTCCTTTCCCGCCGGCCTCTCCCCTCCACCCCGGCACCCCAA ATTTCAATGTGTCGCCTCCTGGGCGCAGAGCGCCGGTGTTGAGCGAGGCGGCGGCCGCGG CTGGGAAAATGCTGGGCATGTACGTGCCGGACAGGTTCTCCCTGAAGTCTTCCCGGGTTC AGGACGGGATGGGGCTCTACACGGCCCGCAGAGTGAGAAAGGGTGAAAAGTTTGGACCTT TCGCTGGAGAGAAGAGAATGCCGGAAGACTTGGATGAAAATATGGATTACAGGTTGATGT GGGAGGTTCGCGGGAGTAAGGGAGAAGTTCTGTACATTTTGGATGCTACCAACCCACGAC ACTCCAACTGGCTTCGCTTTGTTCATGAGGCACCATCTCAGGAGCAGAAGAACTTGGCTG CCATTCAAGAAGGAGAAAATATTTTCTATTTGGCAGTTGAAGATATAGAAACAGATACAG AGCTTCTGATTGGCTACCTGGACAGTGACATGGAGGCCGATGAGGAGGAACAAGAGATTA TGACAATGATCAAAGAAGGGGAAGGTAAAAATTCTAAAGGACAATCAACAGCTGGTAGAA AAGATCGCTTTGGCTGTAAAGAGGACTATGCCTGTCCCCAGTGTGAATCAAGTTTTACCA GTGAGGAAATTCTTGCTGAGCATCTTCAGACATTGCACCAGAAACCCACAGAGGAGAAAG AATTTAAGTGCAAGAGCTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACAGT GAGTACTTTTAAAATTATAAGCTAACACTTTGTTTAACTGCTCCATTTGGTTTGTTCTTA TAGTTTCTAACCTGCGTGCATGTGTGATGATATGTGTATAGAAATTAGGCATTCTCTATT GTCATTGTCATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 681-831, + strand, RNAz p=0.993198 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 681-831, + strand, RNAz p=0.993198 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 95-222, gnl|bosTau2|chr6 (1254928-1255053) | |
| 95-222, gnl|Hg17|chr4 (122201418-122201275) | |
| 95-222, gnl|Mm7|chr6 (65766826-65766947) | |
| 304-427, gnl|bosTau2|chr6 (1306931-1307054) | |
| 304-427, gnl|canFam2|chr19 (22203404-22203219) | |
| 304-427, gnl|danRer3|chr7 (4751933-4751774) | |
| 304-427, gnl|echTel1|scaffold_285647 (2813-2628) | |
| 304-427, gnl|fr1|chrUn (37802914-37802767) | |
| 304-427, gnl|hg17|chr4 (122132155-122132342) | |
| 304-427, gnl|Hg17|chr4 (122132302-122132179) | |
| 304-427, gnl|loxAfr1|scaffold_3278 (95584-95767) | |
| 304-427, gnl|mm7|chr6 (65819149-65818963) | |
| 304-427, gnl|Mm7|chr6 (65819000-65819123) | |
| 304-427, gnl|monDom2|scaffold_32 (6645659-6645502) | |
| 304-427, gnl|oryCun1|scaffold_204256 (16211-16396) | |
| 304-427, gnl|panTro1|chr3 (138959235-138959422) | |
| 304-427, gnl|rheMac2|chr5 (113222169-113222356) | |
| 304-427, gnl|rn3|chr4 (95751114-95750928) | |
| 304-427, gnl|tetNig1|chr1_random (1626492-1626622) | |
| 304-427, gnl|xenTro1|scaffold_310 (1126794-1126969) | |
| 602-912, gnl|bosTau2|chr6 (1341115-1341436) | |
| 602-912, gnl|Hg17|chr4 (122097289-122096951) | |
| 602-912, gnl|Mm7|chr6 (65845394-65845708) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 95-222, gnl|bosTau2|chr6 (1254928-1255053) | |
| 95-222, gnl|Hg17|chr4 (122201418-122201275) | |
| 95-222, gnl|Mm7|chr6 (65766826-65766947) | |
| 304-427, gnl|bosTau2|chr6 (1306931-1307054) | |
| 304-427, gnl|canFam2|chr19 (22203404-22203219) | |
| 304-427, gnl|danRer3|chr7 (4751933-4751774) | |
| 304-427, gnl|echTel1|scaffold_285647 (2813-2628) | |
| 304-427, gnl|fr1|chrUn (37802914-37802767) | |
| 304-427, gnl|hg17|chr4 (122132155-122132342) | |
| 304-427, gnl|Hg17|chr4 (122132302-122132179) | |
| 304-427, gnl|loxAfr1|scaffold_3278 (95584-95767) | |
| 304-427, gnl|mm7|chr6 (65819149-65818963) | |
| 304-427, gnl|Mm7|chr6 (65819000-65819123) | |
| 304-427, gnl|monDom2|scaffold_32 (6645659-6645502) | |
| 304-427, gnl|oryCun1|scaffold_204256 (16211-16396) | |
| 304-427, gnl|panTro1|chr3 (138959235-138959422) | |
| 304-427, gnl|rheMac2|chr5 (113222169-113222356) | |
| 304-427, gnl|rn3|chr4 (95751114-95750928) | |
| 304-427, gnl|tetNig1|chr1_random (1626492-1626622) | |
| 304-427, gnl|xenTro1|scaffold_310 (1126794-1126969) | |
| 602-912, gnl|bosTau2|chr6 (1341115-1341436) | |
| 602-912, gnl|Hg17|chr4 (122097289-122096951) | |
| 602-912, gnl|Mm7|chr6 (65845394-65845708) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |