Ss1.1-Utr1-UTR010034H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGACCTCGGCGTCCAGGCTGGAGGAACGCGGGTCTGAGAGAGCGGTCGTGGGGAGAGC CTTCATGTAACAGGGAAAAGAAGGGGCGGTCTGGCCCCCCAAAGGAGGACGAAGGCCCAC AAAGAAGAGCGCTGGCCTCCGCGCGCTACGGCAACCCCCAGCCGGCGGACTGGCCGGGCC GACGGACCGCTCAACTAGCCACACCCCCGGGAAGGGCCAGAGGCGGTGGGGGCGGGGCCA CACTCTCAAGTCTCGCGATCAGCTGAGAAGGACGGAGGGAGCAGAAAATGGCCCGTCCCG GTTTCCGCAGTCCCTCGAGCTTGGTGCCCCGGGCTGCAGCCCTGCTCCTCGTTCTGAGCG TGCCAAGGGCTTTGGCGTTACCCGAGATATGCATCCAGTGTCCCGGGGATGTGCAAAATT TGTCAGAAGTGGCCCTTTATTGTAAACAGACACCAGAGCTAATGCTGCAAGGCCGCTGCT GCCTGAATGGGAAGGGCACCATCCTGGGGCTGGATCTCCAGAACTGTTCTCTGAAGGACC CTGGTCCAGACTTTGCTCAGGCACATACTGCTGTCATCATAGACCTGCAGGCAAACCCCT TCGAGGGCGACTGGGCCAACACCTTCCGTGGCTTTACCCAGCTCCAGACTCTGATACTGC CACAAGGTGTCAACTGTCCGGGAGGTATCAATGCCTGGGATGTTGTCACTTTTTATATAA CCAACCAAACCTGCCAAGGACAACAGAACCTTTGCAACAGCACTGGGGACCCAGAAACGT GTCCTGAGAATGGATCTTGTGCTCCTGATGGTCCTGGTCTCTTGCAGTGTGTTTGTGCTG ATGGCTTCCATGGCTACAAGTGTATGCGCCAGGGCTCATTCTCACTGCTCATGTTCTTCG GTATTCTGGGATCCACAACATTATCCATTTCCATCCTGCTTTGGGGGACTCAACGCCGAA AAGCCAAGGCTTCATGAACCACAGAGGTCTTCTTACTGACCTAAAGATCATCCCCATCTT AGCCCAGCCAGGGGGATTTGCTTCCTAGACATCGTTGGTCAGCAAAGATGACCGGAAGTC GTTGTTAGAAAGAAGATGGAAATTTGCATAACCTCAGTGTGTTGCAGACGCACCAGTCCA GGAGTGGACTAGTATCAGTTCTCATTTGTGCTGTTGACCATAATAAATTTTTTCTTTTGC TTCAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGACCTCGGCGTCCAGGCTGGAGGAACGCGGGTCTGAGAGAGCGGTCGTGGGGAGAGC CTTCATGTAACAGGGAAAAGAAGGGGCGGTCTGGCCCCCCAAAGGAGGACGAAGGCCCAC AAAGAAGAGCGCTGGCCTCCGCGCGCTACGGCAACCCCCAGCCGGCGGACTGGCCGGGCC GACGGACCGCTCAACTAGCCACACCCCCGGGAAGGGCCAGAGGCGGTGGGGGCGGGGCCA CACTCTCAAGTCTCGCGATCAGCTGAGAAGGACGGAGGGAGCAGAAAATGGCCCGTCCCG GTTTCCGCAGTCCCTCGAGCTTGGTGCCCCGGGCTGCAGCCCTGCTCCTCGTTCTGAGCG TGCCAAGGGCTTTGGCGTTACCCGAGATATGCATCCAGTGTCCCGGGGATGTGCAAAATT TGTCAGAAGTGGCCCTTTATTGTAAACAGACACCAGAGCTAATGCTGCAAGGCCGCTGCT GCCTGAATGGGAAGGGCACCATCCTGGGGCTGGATCTCCAGAACTGTTCTCTGAAGGACC CTGGTCCAGACTTTGCTCAGGCACATACTGCTGTCATCATAGACCTGCAGGCAAACCCCT TCGAGGGCGACTGGGCCAACACCTTCCGTGGCTTTACCCAGCTCCAGACTCTGATACTGC CACAAGGTGTCAACTGTCCGGGAGGTATCAATGCCTGGGATGTTGTCACTTTTTATATAA CCAACCAAACCTGCCAAGGACAACAGAACCTTTGCAACAGCACTGGGGACCCAGAAACGT GTCCTGAGAATGGATCTTGTGCTCCTGATGGTCCTGGTCTCTTGCAGTGTGTTTGTGCTG ATGGCTTCCATGGCTACAAGTGTATGCGCCAGGGCTCATTCTCACTGCTCATGTTCTTCG GTATTCTGGGATCCACAACATTATCCATTTCCATCCTGCTTTGGGGGACTCAACGCCGAA AAGCCAAGGCTTCATGAACCACAGAGGTCTTCTTACTGACCTAAAGATCATCCCCATCTT AGCCCAGCCAGGGGGATTTGCTTCCTAGACATCGTTGGTCAGCAAAGATGACCGGAAGTC GTTGTTAGAAAGAAGATGGAAATTTGCATAACCTCAGTGTGTTGCAGACGCACCAGTCCA GGAGTGGACTAGTATCAGTTCTCATTTGTGCTGTTGACCATAATAAATTTTTTCTTTTGC TTCAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-389, gnl|bosTau2|chr11 (52106616-52106214) | |
| 1-389, gnl|canFam2|chr17 (24173962-24174441) | |
| 1-389, gnl|dasNov1|scaffold_9836 (45978-45594) | |
| 1-389, gnl|echTel1|scaffold_310566 (117409-117934) | |
| 1-389, gnl|hg17|chr2 (27346546-27347080) | |
| 1-389, gnl|Hg17|chr2 (27346575-27346989) | |
| 1-389, gnl|loxAfr1|scaffold_17105 (31167-30652) | |
| 1-389, gnl|mm7|chr5 (30080843-30081367) | |
| 1-389, gnl|Mm7|chr5 (30080850-30081275) | |
| 1-389, gnl|monDom2|scaffold_1 (149078719-149078113) | |
| 1-389, gnl|oryCun1|scaffold_211978 (41732-41263) | |
| 1-389, gnl|panTro1|chr12 (28285491-28286025) | |
| 1-389, gnl|rheMac2|chr13 (27178672-27179205) | |
| 1-389, gnl|rn3|chr6 (25304284-25303740) | |
| 653-774, gnl|bosTau2|chr11 (52103659-52103538) | |
| 653-774, gnl|canFam2|chr17 (24178128-24178353) | |
| 653-774, gnl|echTel1|scaffold_310566 (121570-121796) | |
| 653-774, gnl|hg17|chr2 (27350126-27350346) | |
| 653-774, gnl|Hg17|chr2 (27350151-27350272) | |
| 653-774, gnl|loxAfr1|scaffold_17105 (27683-27459) | |
| 653-774, gnl|mm7|chr5 (30085246-30085479) | |
| 653-774, gnl|Mm7|chr5 (30085279-30085400) | |
| 653-774, gnl|monDom2|scaffold_1 (149072704-149072481) | |
| 653-774, gnl|oryCun1|scaffold_133646 (4589-4801) | |
| 653-774, gnl|panTro1|chr12 (28289086-28289306) | |
| 653-774, gnl|rheMac2|chr13 (27182251-27182471) | |
| 653-774, gnl|rn3|chr6 (25300867-25300634) | |
| 870-1198, gnl|bosTau2|chr11 (52102358-52102024) | |
| 870-1198, gnl|canFam2|chr17 (24178573-24179511) | |
| 870-1198, gnl|dasNov1|scaffold_265428 (4-936) | |
| 870-1198, gnl|echTel1|scaffold_310566 (121968-122779) | |
| 870-1198, gnl|hg17|chr2 (27351041-27351950) | |
| 870-1198, gnl|Hg17|chr2 (27351360-27351674) | |
| 870-1198, gnl|loxAfr1|scaffold_17105 (27244-26367) | |
| 870-1198, gnl|mm7|chr5 (30086476-30087353) | |
| 870-1198, gnl|Mm7|chr5 (30086776-30087128) | |
| 870-1198, gnl|monDom2|scaffold_1 (149072271-149071414) | |
| 870-1198, gnl|panTro1|chr12 (28289997-28290906) | |
| 870-1198, gnl|rheMac2|chr13 (27183189-27184090) | |
| 870-1198, gnl|rn3|chr6 (25300038-25299164) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-389, gnl|bosTau2|chr11 (52106616-52106214) | |
| 1-389, gnl|canFam2|chr17 (24173962-24174441) | |
| 1-389, gnl|dasNov1|scaffold_9836 (45978-45594) | |
| 1-389, gnl|echTel1|scaffold_310566 (117409-117934) | |
| 1-389, gnl|hg17|chr2 (27346546-27347080) | |
| 1-389, gnl|Hg17|chr2 (27346575-27346989) | |
| 1-389, gnl|loxAfr1|scaffold_17105 (31167-30652) | |
| 1-389, gnl|mm7|chr5 (30080843-30081367) | |
| 1-389, gnl|Mm7|chr5 (30080850-30081275) | |
| 1-389, gnl|monDom2|scaffold_1 (149078719-149078113) | |
| 1-389, gnl|oryCun1|scaffold_211978 (41732-41263) | |
| 1-389, gnl|panTro1|chr12 (28285491-28286025) | |
| 1-389, gnl|rheMac2|chr13 (27178672-27179205) | |
| 1-389, gnl|rn3|chr6 (25304284-25303740) | |
| 653-774, gnl|bosTau2|chr11 (52103659-52103538) | |
| 653-774, gnl|canFam2|chr17 (24178128-24178353) | |
| 653-774, gnl|echTel1|scaffold_310566 (121570-121796) | |
| 653-774, gnl|hg17|chr2 (27350126-27350346) | |
| 653-774, gnl|Hg17|chr2 (27350151-27350272) | |
| 653-774, gnl|loxAfr1|scaffold_17105 (27683-27459) | |
| 653-774, gnl|mm7|chr5 (30085246-30085479) | |
| 653-774, gnl|Mm7|chr5 (30085279-30085400) | |
| 653-774, gnl|monDom2|scaffold_1 (149072704-149072481) | |
| 653-774, gnl|oryCun1|scaffold_133646 (4589-4801) | |
| 653-774, gnl|panTro1|chr12 (28289086-28289306) | |
| 653-774, gnl|rheMac2|chr13 (27182251-27182471) | |
| 653-774, gnl|rn3|chr6 (25300867-25300634) | |
| 870-1198, gnl|bosTau2|chr11 (52102358-52102024) | |
| 870-1198, gnl|canFam2|chr17 (24178573-24179511) | |
| 870-1198, gnl|dasNov1|scaffold_265428 (4-936) | |
| 870-1198, gnl|echTel1|scaffold_310566 (121968-122779) | |
| 870-1198, gnl|hg17|chr2 (27351041-27351950) | |
| 870-1198, gnl|Hg17|chr2 (27351360-27351674) | |
| 870-1198, gnl|loxAfr1|scaffold_17105 (27244-26367) | |
| 870-1198, gnl|mm7|chr5 (30086476-30087353) | |
| 870-1198, gnl|Mm7|chr5 (30086776-30087128) | |
| 870-1198, gnl|monDom2|scaffold_1 (149072271-149071414) | |
| 870-1198, gnl|panTro1|chr12 (28289997-28290906) | |
| 870-1198, gnl|rheMac2|chr13 (27183189-27184090) | |
| 870-1198, gnl|rn3|chr6 (25300038-25299164) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| pty (0.570858) | |
| mas (0.42061) | |
| ebs (0.354904) | |
| sin (0.349895) | |
| cut (0.339847) | |
| jej (0.296765) | |
| cte (0.29274) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| pla (0.267344) | |
| pgl (0.236967) | |
| hea (0.204499) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| fat (0.147427) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.570858) | |
| mas (0.42061) | |
| ebs (0.354904) | |
| sin (0.349895) | |
| cut (0.339847) | |
| jej (0.296765) | |
| cte (0.29274) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| pla (0.267344) | |
| pgl (0.236967) | |
| hea (0.204499) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| fat (0.147427) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cov (0.132153) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |