Ss1.1-Utr1-UTR010034H08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTAATCTCTTTAATCTCCACTTCTCAACATTTTGTCACAATAATAATAAAAATAATA TCTGTTTTAAAAATCCACAGGGAATGATCAGGGGAGGGGCTCGTCTCGGGCTCTTCCCTC TGACATTCGGAAACTCCCAGCCTCTTCCCGGCCCGGGCTCTCTGGCCTCCGGCCCTTCCT AGTGCCTGAAGACGGCTGTTCGGGACCCATGTCACCCAGAGTGCAGTGTCCTGGGGGCTG CGGCCAGGAGCTACATGGGGGTTTGGGAGCCAGTGAGGCGGGGAGAGCCAGAGGTGGGGG GAGTTGTCAGGACCGATGGGACTCTCTGGGTGACATCACGTGAGCGAGCCCAGCCCGGGG AAGCCTACACGGAGGGTGCGGATCCGCAGGGAGGACCCCGGCCGCAGGGGCAATAGCCCA GACACCTGGCAGAGACGGAGCTGGGGCCCGAGGGAACTCGCCGCCGTGGCCGAGAACTCC TCCAGGCAGCGCAGGGCCAGCGTGTCGTCCACCAGCAAGTCCAGCTTCAGGTAGACGGCC TGGCTTTCCTCCGTCCGGGGATTCAGGTCCAGCGGCTCCTGGTCCTCCTCTGCCACGAGC TCCCCCTGGGAAGGCTCCTGGGCAGACAGCGATGCCCGCCTCCCCAGGCTGACCACGGCC AGCAGGAGGCCAAGGCAGGCCAGCGCCAGGCCCAGGCCCAGCACGAGCGGGGCCAGCAGG GCGGTGCCCGGCTCCCCCCGGCGCCCCCTCCGCCTCTGGCTCCGACGGGCGGCCATGGGG GCGGGGGGCTGTGCCTGCCTCACCGCCCCCCCATCCCGGGACCCGAGGGATCGGGGGAGG GGGAGCCGGCGGGCGGATCGGGCCGGGGAGAGGGAGGGGCCAGGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTAATCTCTTTAATCTCCACTTCTCAACATTTTGTCACAATAATAATAAAAATAATA TCTGTTTTAAAAATCCACAGGGAATGATCAGGGGAGGGGCTCGTCTCGGGCTCTTCCCTC TGACATTCGGAAACTCCCAGCCTCTTCCCGGCCCGGGCTCTCTGGCCTCCGGCCCTTCCT AGTGCCTGAAGACGGCTGTTCGGGACCCATGTCACCCAGAGTGCAGTGTCCTGGGGGCTG CGGCCAGGAGCTACATGGGGGTTTGGGAGCCAGTGAGGCGGGGAGAGCCAGAGGTGGGGG GAGTTGTCAGGACCGATGGGACTCTCTGGGTGACATCACGTGAGCGAGCCCAGCCCGGGG AAGCCTACACGGAGGGTGCGGATCCGCAGGGAGGACCCCGGCCGCAGGGGCAATAGCCCA GACACCTGGCAGAGACGGAGCTGGGGCCCGAGGGAACTCGCCGCCGTGGCCGAGAACTCC TCCAGGCAGCGCAGGGCCAGCGTGTCGTCCACCAGCAAGTCCAGCTTCAGGTAGACGGCC TGGCTTTCCTCCGTCCGGGGATTCAGGTCCAGCGGCTCCTGGTCCTCCTCTGCCACGAGC TCCCCCTGGGAAGGCTCCTGGGCAGACAGCGATGCCCGCCTCCCCAGGCTGACCACGGCC AGCAGGAGGCCAAGGCAGGCCAGCGCCAGGCCCAGGCCCAGCACGAGCGGGGCCAGCAGG GCGGTGCCCGGCTCCCCCCGGCGCCCCCTCCGCCTCTGGCTCCGACGGGCGGCCATGGGG GCGGGGGGCTGTGCCTGCCTCACCGCCCCCCCATCCCGGGACCCGAGGGATCGGGGGAGG GGGAGCCGGCGGGCGGATCGGGCCGGGGAGAGGGAGGGGCCAGGGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-158, + strand, RNAz p=0.996149 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-158, + strand, RNAz p=0.996149 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 42-158, BP173436 full-length enriched swine cDNA library, adult uterus Sus (dbj|BP173436.1|), blast E-value=0, identity=100% | |
| 42-97, 956712 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK769182.1|), blast E-value=1e-19, identity=98.21% | |
| 42-97, 4115132 BARC 9BOV Bos taurus cDNA clone 9BOV45_K19 3', mRNA (gb|CK982590.1|), blast E-value=1e-19, identity=98.21% | |
| 42-97, 1317100 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528543.1|), blast E-value=1e-19, identity=98.21% | |
| 42-97, 1318636 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529942.1|), blast E-value=1e-19, identity=98.21% | |
| 42-97, 1585341 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY457631.1|), blast E-value=1e-19, identity=98.21% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 42-158, BP173436 full-length enriched swine cDNA library, adult uterus Sus (dbj|BP173436.1|), blast E-value=0, identity=100% | |
| 42-97, 956712 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK769182.1|), blast E-value=1e-19, identity=98.21% | |
| 42-97, 4115132 BARC 9BOV Bos taurus cDNA clone 9BOV45_K19 3', mRNA (gb|CK982590.1|), blast E-value=1e-19, identity=98.21% | |
| 42-97, 1317100 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528543.1|), blast E-value=1e-19, identity=98.21% | |
| 42-97, 1318636 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529942.1|), blast E-value=1e-19, identity=98.21% | |
| 42-97, 1585341 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY457631.1|), blast E-value=1e-19, identity=98.21% |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 3-227, gnl|bosTau2|chr15 (25625181-25625400) | |
| 3-227, gnl|canFam2|chr5 (35476885-35477384) | |
| 3-227, gnl|dasNov1|scaffold_17578 (39490-39994) | |
| 3-227, gnl|hg17|chr17 (7401395-7401959) | |
| 3-227, gnl|Hg17|chr17 (7401926-7401692) | |
| 3-227, gnl|loxAfr1|scaffold_25257 (19938-20450) | |
| 3-227, gnl|mm7|chr11 (69768412-69767914) | |
| 3-227, gnl|Mm7|chr11 (69767937-69768136) | |
| 3-227, gnl|monDom2|scaffold_66 (4599016-4599796) | |
| 3-227, gnl|panTro1|chr19_random (44348099-44347534) | |
| 3-227, gnl|rheMac2|chr16 (7283218-7283798) | |
| 3-227, gnl|rn3|chr10 (56517872-56517371) | |
| 403-541, gnl|bosTau2|chr15 (25625790-25625928) | |
| 403-541, gnl|Hg17|chr17 (7401290-7401159) | |
| 617-888, gnl|bosTau2|chr15 (25632847-25633116) | |
| 617-888, gnl|canFam2|chr5 (35469195-35469619) | |
| 617-888, gnl|dasNov1|scaffold_52847 (4451-4042) | |
| 617-888, gnl|hg17|chr17 (7393052-7393459) | |
| 617-888, gnl|Hg17|chr17 (7393354-7393083) | |
| 617-888, gnl|loxAfr1|scaffold_25257 (11782-12149) | |
| 617-888, gnl|mm7|chr11 (69777474-69777067) | |
| 617-888, gnl|Mm7|chr11 (69777169-69777439) | |
| 617-888, gnl|monDom2|scaffold_66 (4588704-4589133) | |
| 617-888, gnl|panTro1|chr19_random (44356405-44355998) | |
| 617-888, gnl|rheMac2|chr16 (7275062-7275469) | |
| 617-888, gnl|rn3|chr10 (56526528-56526122) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-227, gnl|bosTau2|chr15 (25625181-25625400) | |
| 3-227, gnl|canFam2|chr5 (35476885-35477384) | |
| 3-227, gnl|dasNov1|scaffold_17578 (39490-39994) | |
| 3-227, gnl|hg17|chr17 (7401395-7401959) | |
| 3-227, gnl|Hg17|chr17 (7401926-7401692) | |
| 3-227, gnl|loxAfr1|scaffold_25257 (19938-20450) | |
| 3-227, gnl|mm7|chr11 (69768412-69767914) | |
| 3-227, gnl|Mm7|chr11 (69767937-69768136) | |
| 3-227, gnl|monDom2|scaffold_66 (4599016-4599796) | |
| 3-227, gnl|panTro1|chr19_random (44348099-44347534) | |
| 3-227, gnl|rheMac2|chr16 (7283218-7283798) | |
| 3-227, gnl|rn3|chr10 (56517872-56517371) | |
| 403-541, gnl|bosTau2|chr15 (25625790-25625928) | |
| 403-541, gnl|Hg17|chr17 (7401290-7401159) | |
| 617-888, gnl|bosTau2|chr15 (25632847-25633116) | |
| 617-888, gnl|canFam2|chr5 (35469195-35469619) | |
| 617-888, gnl|dasNov1|scaffold_52847 (4451-4042) | |
| 617-888, gnl|hg17|chr17 (7393052-7393459) | |
| 617-888, gnl|Hg17|chr17 (7393354-7393083) | |
| 617-888, gnl|loxAfr1|scaffold_25257 (11782-12149) | |
| 617-888, gnl|mm7|chr11 (69777474-69777067) | |
| 617-888, gnl|Mm7|chr11 (69777169-69777439) | |
| 617-888, gnl|monDom2|scaffold_66 (4588704-4589133) | |
| 617-888, gnl|panTro1|chr19_random (44356405-44355998) | |
| 617-888, gnl|rheMac2|chr16 (7275062-7275469) | |
| 617-888, gnl|rn3|chr10 (56526528-56526122) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |