Ss1.1-Utr1-UTR010034H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAAAGAAAACGGATCCTCCTGTGGGATCCGTAGGAGAGTGACCAGGTGTGCCAAAATA TGCCCAGGGTCCTGCCCTCAGCACTATGTTTTGATGGGGCCAAGAGGGTCCAAACCCCTT GCTAACATACCACTTCTTTGTTGAACTCCTTTACCTCCCCAGCCCTTTGTGGAGGGACCA TGAGAACAGAAATTACCTTGTGGAAAGCTGCTCCTGTCTTGCTTTCCCCCTTACGTATTG ACGGTTTGTTTCCCTGGCCTCCCAGAGGGCTGCACCCTTTTAACTCCCTGCTGCCCAGCC TCCTCAGTGGACTTGCCTCTCCTAAGCAGAGAAGGCCCGTGAGGTTGCTTTCCGCTGGGG AGCCTGGCAGAGCCAATTGCCACCCTCTACTGCTTCTTGCTTGGTTGCCTCTTGCAATAA CCAGCTCCACTAGGTGTTCCCTTTCCCTGGGGCTTCTCCATTTCACATGTGGAGCCCTTC CCCCAAGAAGGCTGCTTCCTTGTTTTAGAGGAAGGTACTGCCATTGGGAGTTGGGGATAT CGGACCTCAGCAGTGAAGAACGCTTGTGAAGTACTAGGAGTGGGGAAGGAGGCAAGTTGG GCAGGATATGGCCTACTTCCATAGGCTTTTCTTTTTTCAGGTTTGATGTGAGCATGGGCT TGCATCCTCCAGGTACATACTTTTACTTATTGTGGGATAACCTGGCACTAGTAGGTAAAG TCACAAATTTGGTATTTTTCCAGCTTTTGACTATTGACTTAATAGCTCCCCTCGCTCTGC CTGGAGGTACTTGCTGCCTCTGATAAGGAGCAAGGAAGAAGTGGAGCCTGACTTGAATGA GCTCAGCTCAGAGTTCTAAGGACCACCACTCTGGGGGTCATTTTCTACACAGGCAAATGG AATTGCTTTTCCCATGACATCCAAATTGTGATGTGGTTGCTGCTGGAGGAAGCGGCAGCA ACAGGGTCCTGCAGTACCCATGGGGCGACGGATGCTACTTCTGCATGCATCTCTAGGGCA TATGACATCTAACATGAGACGTGGCATGTGAGTTGTAGGGTCACCAGAGACCCTTCTGGC TCAGAGGGGAGACTGAGTTGGATTGAACCCTCCCTCTGTTCCCTGCACGTTTCTGACACA GCCCTCAGCGCGGCACTGAGGGAGCCCCCTCCCCAGGGTTGGAGAGGCACATTCCCTTGG GACAGAGGCTACAGGTTTGTAACTCTTTTTCCCCTGTCGCCCAACCCCATCCCCACCTCC ACTTCAGAATATGGCACCCCGCCCAGCCGGCCAAGTGTTCAGTGATGTGCTTATCAACAA GAGCAGCTCCGGGTGTCTTTTTAATGTAGAAAAAACCAAGTACGGTGACAGTTTAAGGAG AAAAAAGATATATAGAATACCGGAAAAGCCGTTTACCCGGAGAATTTTTTTTCTCCCCAT TTTTGTTTTGTTTTTACTCAATGACACATTTTTTAGTTTTATTTCCTGATAGCAAAAGGA AAAAAAAACCCAATCCTCCAAAAGGTCAAGGCCCCGTCCCCCTGTTGTCGGTGATTTGTT TGTCTTTCTGATAGGTTGAAAATTGTGTAATAAACTTGATGACGCTGTCAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAAAGAAAACGGATCCTCCTGTGGGATCCGTAGGAGAGTGACCAGGTGTGCCAAAATA TGCCCAGGGTCCTGCCCTCAGCACTATGTTTTGATGGGGCCAAGAGGGTCCAAACCCCTT GCTAACATACCACTTCTTTGTTGAACTCCTTTACCTCCCCAGCCCTTTGTGGAGGGACCA TGAGAACAGAAATTACCTTGTGGAAAGCTGCTCCTGTCTTGCTTTCCCCCTTACGTATTG ACGGTTTGTTTCCCTGGCCTCCCAGAGGGCTGCACCCTTTTAACTCCCTGCTGCCCAGCC TCCTCAGTGGACTTGCCTCTCCTAAGCAGAGAAGGCCCGTGAGGTTGCTTTCCGCTGGGG AGCCTGGCAGAGCCAATTGCCACCCTCTACTGCTTCTTGCTTGGTTGCCTCTTGCAATAA CCAGCTCCACTAGGTGTTCCCTTTCCCTGGGGCTTCTCCATTTCACATGTGGAGCCCTTC CCCCAAGAAGGCTGCTTCCTTGTTTTAGAGGAAGGTACTGCCATTGGGAGTTGGGGATAT CGGACCTCAGCAGTGAAGAACGCTTGTGAAGTACTAGGAGTGGGGAAGGAGGCAAGTTGG GCAGGATATGGCCTACTTCCATAGGCTTTTCTTTTTTCAGGTTTGATGTGAGCATGGGCT TGCATCCTCCAGGTACATACTTTTACTTATTGTGGGATAACCTGGCACTAGTAGGTAAAG TCACAAATTTGGTATTTTTCCAGCTTTTGACTATTGACTTAATAGCTCCCCTCGCTCTGC CTGGAGGTACTTGCTGCCTCTGATAAGGAGCAAGGAAGAAGTGGAGCCTGACTTGAATGA GCTCAGCTCAGAGTTCTAAGGACCACCACTCTGGGGGTCATTTTCTACACAGGCAAATGG AATTGCTTTTCCCATGACATCCAAATTGTGATGTGGTTGCTGCTGGAGGAAGCGGCAGCA ACAGGGTCCTGCAGTACCCATGGGGCGACGGATGCTACTTCTGCATGCATCTCTAGGGCA TATGACATCTAACATGAGACGTGGCATGTGAGTTGTAGGGTCACCAGAGACCCTTCTGGC TCAGAGGGGAGACTGAGTTGGATTGAACCCTCCCTCTGTTCCCTGCACGTTTCTGACACA GCCCTCAGCGCGGCACTGAGGGAGCCCCCTCCCCAGGGTTGGAGAGGCACATTCCCTTGG GACAGAGGCTACAGGTTTGTAACTCTTTTTCCCCTGTCGCCCAACCCCATCCCCACCTCC ACTTCAGAATATGGCACCCCGCCCAGCCGGCCAAGTGTTCAGTGATGTGCTTATCAACAA GAGCAGCTCCGGGTGTCTTTTTAATGTAGAAAAAACCAAGTACGGTGACAGTTTAAGGAG AAAAAAGATATATAGAATACCGGAAAAGCCGTTTACCCGGAGAATTTTTTTTCTCCCCAT TTTTGTTTTGTTTTTACTCAATGACACATTTTTTAGTTTTATTTCCTGATAGCAAAAGGA AAAAAAAACCCAATCCTCCAAAAGGTCAAGGCCCCGTCCCCCTGTTGTCGGTGATTTGTT TGTCTTTCTGATAGGTTGAAAATTGTGTAATAAACTTGATGACGCTGTCAAAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-276, - strand, RNAz p=0.999765 | |
| 397-832, + strand, RNAz p=0.990122 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-276, - strand, RNAz p=0.999765 | |
| 397-832, + strand, RNAz p=0.990122 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 1-276, BP166475 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP166475.1|), blast E-value=0, identity=100% | |
| 33-272, BP269741 Sugano cDNA library, thyroid JTH Homo sapiens cDNA clone (dbj|BP269741.1|), blast E-value=0, identity=91.29% | |
| 33-272, DA055049 BRACE2 Homo sapiens cDNA clone BRACE2000997 5', mRNA (dbj|DA055049.1|), blast E-value=0, identity=91.29% | |
| 33-272, DA305416 BRHIP2 Homo sapiens cDNA clone BRHIP2021651 5', mRNA (dbj|DA305416.1|), blast E-value=0, identity=91.29% | |
| 33-272, DA381220 BRTHA2 Homo sapiens cDNA clone BRTHA2014728 5', mRNA (dbj|DA381220.1|), blast E-value=0, identity=91.29% | |
| 33-272, EST176200 Colon carcinoma (Caco-2) cell line II Homo sapiens cDNA (gb|AA305207.1|), blast E-value=0, identity=90.87% | |
| 397-799, BP166475 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP166475.1|), blast E-value=0, identity=99.26% | |
| 397-832, BP173480 full-length enriched swine cDNA library, adult uterus Sus (dbj|BP173480.1|), blast E-value=0, identity=100% | |
| 397-832, CJ029920 full-length enriched swine cDNA library, adult trachea Sus (dbj|CJ029920.1|), blast E-value=0, identity=100% | |
| 486-832, CJ030069 full-length enriched swine cDNA library, adult testis Sus (dbj|CJ030069.1|), blast E-value=0, identity=99.71% | |
| 397-832, LB03015.CR_N21 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV929183.1|), blast E-value=0, identity=94.12% | |
| 397-832, LB02115.CR_D23 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE232735.1|), blast E-value=0, identity=94.12% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 1-276, BP166475 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP166475.1|), blast E-value=0, identity=100% | |
| 33-272, BP269741 Sugano cDNA library, thyroid JTH Homo sapiens cDNA clone (dbj|BP269741.1|), blast E-value=0, identity=91.29% | |
| 33-272, DA055049 BRACE2 Homo sapiens cDNA clone BRACE2000997 5', mRNA (dbj|DA055049.1|), blast E-value=0, identity=91.29% | |
| 33-272, DA305416 BRHIP2 Homo sapiens cDNA clone BRHIP2021651 5', mRNA (dbj|DA305416.1|), blast E-value=0, identity=91.29% | |
| 33-272, DA381220 BRTHA2 Homo sapiens cDNA clone BRTHA2014728 5', mRNA (dbj|DA381220.1|), blast E-value=0, identity=91.29% | |
| 33-272, EST176200 Colon carcinoma (Caco-2) cell line II Homo sapiens cDNA (gb|AA305207.1|), blast E-value=0, identity=90.87% | |
| 397-799, BP166475 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP166475.1|), blast E-value=0, identity=99.26% | |
| 397-832, BP173480 full-length enriched swine cDNA library, adult uterus Sus (dbj|BP173480.1|), blast E-value=0, identity=100% | |
| 397-832, CJ029920 full-length enriched swine cDNA library, adult trachea Sus (dbj|CJ029920.1|), blast E-value=0, identity=100% | |
| 486-832, CJ030069 full-length enriched swine cDNA library, adult testis Sus (dbj|CJ030069.1|), blast E-value=0, identity=99.71% | |
| 397-832, LB03015.CR_N21 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV929183.1|), blast E-value=0, identity=94.12% | |
| 397-832, LB02115.CR_D23 GC_BGC-21 Bos taurus cDNA clone IMAGE (gb|EE232735.1|), blast E-value=0, identity=94.12% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC018135, + |
| Aligned organism(s): 6 entry(ies) | More info |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
| 1-905, gnl|bosTau2|chr29 (31001791-31000896) | |
| 1-905, gnl|Hg17|chr11 (60928386-60927477) | |
| 1-905, gnl|Mm7|chr19 (10226173-10227093) | |
| 1364-1631, gnl|bosTau2|chr19 (30231475-30231221) | |
| 1364-1631, gnl|Hg17|chr11 (60927019-60926772) | |
| 1364-1631, gnl|Mm7|chr19 (10227541-10227785) |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-905, gnl|bosTau2|chr29 (31001791-31000896) | |
| 1-905, gnl|Hg17|chr11 (60928386-60927477) | |
| 1-905, gnl|Mm7|chr19 (10226173-10227093) | |
| 1364-1631, gnl|bosTau2|chr19 (30231475-30231221) | |
| 1364-1631, gnl|Hg17|chr11 (60927019-60926772) | |
| 1364-1631, gnl|Mm7|chr19 (10227541-10227785) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fce (0.271592) | |
| eru (0.240096) | |
| clu (0.239292) | |
| ece (0.229305) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fce (0.271592) | |
| eru (0.240096) | |
| clu (0.239292) | |
| ece (0.229305) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |