Non-Coding RNA Search

Ss1.1-Utr1-UTR010035E06.5

Sequence:


               
               TTTTCACAGCCTCAGAGGCCTGGAAGAAGATCCAGCTGGGAAAGATGCATTGACGACCCG
CCCGGGCCCGATGGCCGAGGACCCAGGGAGACCGCTCACCCTGCCTCCAGCGCCCTGTCT
CCTCCTGCCCTCTCTCTGGCCCAGGATCTGGCTGCGTCCCAAAGTGGGGGTGAGGGGAAG
GAGGGGGTGGCTCATGGGTTTGCAGCTACCTCTTTTCCCCATGTTTAACTTTAGCTGAAT
GACACTGCCTGAAGTCGGGGTGCTCCTTTCTTTCCCTGAGGAGCCCCACGATCAGAGTCG
GGCAAGGAAGGCTTGGGGATATTGGGAACCACTCCTGGGACAGCTGCAGTCCCTTCGCTC
TTAGGGGAACAGCTCACAATCCACGTCCACCAGCCCTCAGCCAGGCTCTGACAATCTCGC
AGCCCCCATCGTTTCAGACGCATTAATCACCTGGTTTCTCCCCTGGGCAACCAACCCACC
CACTGACCTGAGCTCCTGACCTTGGACCTGGCTGCCCAAAGGTACCCCCAGCCGGCGCCC
ACAACAAAGAATGGTACTTCCCAGGCAAGCCCCTGAGATGTGGCGCTGCAGGTGGAGCCC
TCGCTCCTCCTCCATCCCTTCCTGCCCAACCTAGAGCCCAGCCTCAAGGCCCTCGCCCCT
GCCCCTTCCTTTTTCTCCCCAGAAGCAGATGCCCAGTTGCTGGGCAACAGCTGTGTAGGC
TCAAGTCTGCCCACTGGTCACCGGGCACATGGCGAGTTCCCCTTCTTCTCTTCTTCTTGT
TCCTCTGAACCCCCTGCCAATGTGCCTCAGCCCCCTACCCCAACCCTGTGCTGTGTGGCA
ACTGCATCGCTTGGTGGAGGGGCTGGCTGTGATGAGGAAGCATCCTTTGAGAACTGGGCA
TGGCTTGTGCACCTATGTCTGGATGGGACGCATCCTTTTCTGCAACCCTAAAATAAGCAT
GTCTTGGCCAGGCAGTTGCCATTGCTCCCAAGGGCTTGGGTGGGGGAAGCAAAGCAGACC
AGCCCTTCTCCCATCTTAGGACCTGAAGGCAAACAGCTCGTGGGCCTCTCCTGCAGCCCG
GTTGCGACCCGCTTGTCCCGCCGAGCTCCCCCATTAGCCGGCCGCACACCAACTCCCTCC
TGGTCCCTGGGGCAACTCCGTTGTCTCCCCACTTGCTCATGGATGGGTCCCTACCCCGCT
GCTCCCCCTCATCCTTCCCCTGTAGTCCTGAAAGGGAGGGGCAATGGTCCAGGCACAAAT
TCCACCCCCCCCACCCCCAGGGAATTTTAGTTATGCCCTCCTGTCCCAGGCAAAGGGCCG
CCCACCTGTTTCCCATTTATATCAAGATTGTTTGCATACTTTGTAATTAAGGGCACTGTC
CAGTGGAATGAGTTTTTAAATTATCTATGTGGATGGCTCAAGTCTCCACCATTTGTAAAA
TTGTAATTTGGGCTCTAGATTCCAATAAGAAAAGCTTTCCCTTTGGCATATGAGTTGACT
AATAGAAGTGTAAACTGCATTTGGTTATTTCTGGTATCTGTGGCCACTCAGATGGATTTT
TTTGTTTTGTTTTGTTTTGTTTTGTTTTGGCATTCTGTTCCCCATTTACAGAAAGGAGCC
CCTTGGGTGTGTGAAGACATGTGCCTGGAGAGGGTGGGCAGGGCTGGGTGGGGAAATGTG
TGGCATGCCCAGGAATTGAAATTCCACTTTTATGCATTAAAAAAAAAAAAAAAAAAAAAA
CCTCTTGAGGACCTAGGGGGATGTCAGTTTCCTATGGAAGAGACACCTCTGACCCTTTGT
TCTTATAAACAAAATCTCAAGGGAAAAAGATGTGTTAGTTCTTTGCCCATTCATTGGGGT
CAAATAGATTAAAAGGCTGATTTTCAGAAATAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCACAGCCTCAGAGGCCTGGAAGAAGATCCAGCTGGGAAAGATGCATTGACGACCCG
CCCGGGCCCGATGGCCGAGGACCCAGGGAGACCGCTCACCCTGCCTCCAGCGCCCTGTCT
CCTCCTGCCCTCTCTCTGGCCCAGGATCTGGCTGCGTCCCAAAGTGGGGGTGAGGGGAAG
GAGGGGGTGGCTCATGGGTTTGCAGCTACCTCTTTTCCCCATGTTTAACTTTAGCTGAAT
GACACTGCCTGAAGTCGGGGTGCTCCTTTCTTTCCCTGAGGAGCCCCACGATCAGAGTCG
GGCAAGGAAGGCTTGGGGATATTGGGAACCACTCCTGGGACAGCTGCAGTCCCTTCGCTC
TTAGGGGAACAGCTCACAATCCACGTCCACCAGCCCTCAGCCAGGCTCTGACAATCTCGC
AGCCCCCATCGTTTCAGACGCATTAATCACCTGGTTTCTCCCCTGGGCAACCAACCCACC
CACTGACCTGAGCTCCTGACCTTGGACCTGGCTGCCCAAAGGTACCCCCAGCCGGCGCCC
ACAACAAAGAATGGTACTTCCCAGGCAAGCCCCTGAGATGTGGCGCTGCAGGTGGAGCCC
TCGCTCCTCCTCCATCCCTTCCTGCCCAACCTAGAGCCCAGCCTCAAGGCCCTCGCCCCT
GCCCCTTCCTTTTTCTCCCCAGAAGCAGATGCCCAGTTGCTGGGCAACAGCTGTGTAGGC
TCAAGTCTGCCCACTGGTCACCGGGCACATGGCGAGTTCCCCTTCTTCTCTTCTTCTTGT
TCCTCTGAACCCCCTGCCAATGTGCCTCAGCCCCCTACCCCAACCCTGTGCTGTGTGGCA
ACTGCATCGCTTGGTGGAGGGGCTGGCTGTGATGAGGAAGCATCCTTTGAGAACTGGGCA
TGGCTTGTGCACCTATGTCTGGATGGGACGCATCCTTTTCTGCAACCCTAAAATAAGCAT
GTCTTGGCCAGGCAGTTGCCATTGCTCCCAAGGGCTTGGGTGGGGGAAGCAAAGCAGACC
AGCCCTTCTCCCATCTTAGGACCTGAAGGCAAACAGCTCGTGGGCCTCTCCTGCAGCCCG
GTTGCGACCCGCTTGTCCCGCCGAGCTCCCCCATTAGCCGGCCGCACACCAACTCCCTCC
TGGTCCCTGGGGCAACTCCGTTGTCTCCCCACTTGCTCATGGATGGGTCCCTACCCCGCT
GCTCCCCCTCATCCTTCCCCTGTAGTCCTGAAAGGGAGGGGCAATGGTCCAGGCACAAAT
TCCACCCCCCCCACCCCCAGGGAATTTTAGTTATGCCCTCCTGTCCCAGGCAAAGGGCCG
CCCACCTGTTTCCCATTTATATCAAGATTGTTTGCATACTTTGTAATTAAGGGCACTGTC
CAGTGGAATGAGTTTTTAAATTATCTATGTGGATGGCTCAAGTCTCCACCATTTGTAAAA
TTGTAATTTGGGCTCTAGATTCCAATAAGAAAAGCTTTCCCTTTGGCATATGAGTTGACT
AATAGAAGTGTAAACTGCATTTGGTTATTTCTGGTATCTGTGGCCACTCAGATGGATTTT
TTTGTTTTGTTTTGTTTTGTTTTGTTTTGGCATTCTGTTCCCCATTTACAGAAAGGAGCC
CCTTGGGTGTGTGAAGACATGTGCCTGGAGAGGGTGGGCAGGGCTGGGTGGGGAAATGTG
TGGCATGCCCAGGAATTGAAATTCCACTTTTATGCATTAAAAAAAAAAAAAAAAAAAAAA
CCTCTTGAGGACCTAGGGGGATGTCAGTTTCCTATGGAAGAGACACCTCTGACCCTTTGT
TCTTATAAACAAAATCTCAAGGGAAAAAGATGTGTTAGTTCTTTGCCCATTCATTGGGGT
CAAATAGATTAAAAGGCTGATTTTCAGAAATAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 6 entry(ies)

More info

Predicted RNA structure(s): 6 entry(ies)

Help | Less info


               
               162-272, - strand, RNAz p=0.978593
               

               
               427-531, - strand, RNAz p=0.764364
               

               
               572-769, - strand, RNAz p=0.876693
               

               
               1059-1177, - strand, RNAz p=0.60438
               

               
               1089-1286, - strand, RNAz p=0.999801
               

               
               1708-1826, - strand, RNAz p=0.999786

Predicted RNA structure(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-272, - strand, RNAz p=0.978593
               

               
               427-531, - strand, RNAz p=0.764364
               

               
               572-769, - strand, RNAz p=0.876693
               

               
               1059-1177, - strand, RNAz p=0.60438
               

               
               1089-1286, - strand, RNAz p=0.999801
               

               
               1708-1826, - strand, RNAz p=0.999786

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               3-1890, gnl|bosTau2|chr3 (61365245-61363425)
               

               
               3-1890, gnl|Hg17|chr5 (172310375-172312292)
               

               
               3-1890, gnl|Mm7|chr17 (24839671-24841481)
               


               
               849-1177, gnl|bosTau2|chr14 (4235404-4235057)
               

               
               849-1177, gnl|Hg17|chr5 (172311276-172311616)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1890, gnl|bosTau2|chr3 (61365245-61363425)
               

               
               3-1890, gnl|Hg17|chr5 (172310375-172312292)
               

               
               3-1890, gnl|Mm7|chr17 (24839671-24841481)
               


               
               849-1177, gnl|bosTau2|chr14 (4235404-4235057)
               

               
               849-1177, gnl|Hg17|chr5 (172311276-172311616)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               cst (0.840218)
               

               
               pgl (0.473934)
               

               
               cov (0.396458)
               

               
               jca (0.34188)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.840218)
               

               
               pgl (0.473934)
               

               
               cov (0.396458)
               

               
               jca (0.34188)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               pty (0.285429)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	162-272, - strand, RNAz p=0.978593
	427-531, - strand, RNAz p=0.764364
	572-769, - strand, RNAz p=0.876693
	1059-1177, - strand, RNAz p=0.60438
	1089-1286, - strand, RNAz p=0.999801
	1708-1826, - strand, RNAz p=0.999786

	3-1890, gnl\|bosTau2\|chr3 (61365245-61363425)
	3-1890, gnl\|Hg17\|chr5 (172310375-172312292)
	3-1890, gnl\|Mm7\|chr17 (24839671-24841481)

	849-1177, gnl\|bosTau2\|chr14 (4235404-4235057)
	849-1177, gnl\|Hg17\|chr5 (172311276-172311616)

	cst (0.840218)
	pgl (0.473934)
	cov (0.396458)
	jca (0.34188)
	sme (0.305437)
	cag (0.302389)
	pty (0.285429)
	fce (0.271592)
	bla (0.248694)
	nms (0.213858)
	hea (0.204499)
	col (0.195008)
	ldo (0.194005)
	mcp (0.170648)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	csp (0.161186)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	ste (0.135208)
	eru (0.120048)
	ebs (0.118301)